View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17087_low_78 (Length: 204)

Name: NF17087_low_78
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17087_low_78
NF17087_low_78
[»] chr7 (1 HSPs)
chr7 (10-187)||(1699889-1700066)
[»] chr5 (7 HSPs)
chr5 (45-128)||(38866889-38866972)
chr5 (45-123)||(29566539-29566617)
chr5 (10-128)||(32432155-32432273)
chr5 (45-128)||(29169441-29169524)
chr5 (10-128)||(1758914-1759032)
chr5 (49-123)||(29426414-29426488)
chr5 (47-123)||(29250524-29250600)
[»] chr4 (5 HSPs)
chr4 (10-128)||(27463092-27463210)
chr4 (10-128)||(27471691-27471809)
chr4 (10-128)||(27483464-27483582)
chr4 (10-128)||(27519814-27519932)
chr4 (45-128)||(18987849-18987932)
[»] chr3 (1 HSPs)
chr3 (10-128)||(25520093-25520211)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 1700066 - 1699889
Alignment:
Q  10 agaacctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgt 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1700066 agaagctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgt 1699967  T
Q  110 tattacaagttggtctagatgatatactatgtttggttccttttcatttaggaatcacttttgttttattcttttata 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1699966 tattacaagttggtctagatgatatactatgtttggttccttttcatttaggaatcacttttgttttattcttttata 1699889  T

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Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 38866972 - 38866889
Alignment:
Q  45 taagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgttattacaagttggtctaga 128  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||  || ||||||||||| ||||||||||||||||    
T  38866972 taagccttactttcaagtgtccatgtggcaagggatatgaggttctaatatgtgcaaacaattgttactacaagttggtctaga 38866889  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 29566617 - 29566539
Alignment:
Q  45 taagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgttattacaagttggt 123  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| || |  || ||||||||||| |||||||||||    
T  29566617 taagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggt 29566539  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 32432155 - 32432273
Alignment:
Q  10 agaacctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgt 109  Q
    |||| |||| ||||||||||||  |||||| ||  ||||||||| ||| | |||||||||||||||||| ||||||||||| ||||  || |||||||||    
T  32432155 agaagctgttagtgtagagtggattgaaaagtgtttaagccttatttttaggtgtccatgtggcaaggggtatgaggttctaatatgtgcaaacaattgt 32432254  T
Q  110 tattacaagttggtctaga 128  Q
    || ||||||||||| ||||    
T  32432255 tactacaagttggtgtaga 32432273  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 29169441 - 29169524
Alignment:
Q  45 taagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgttattacaagttggtctaga 128  Q
    ||||||||||||||| ||| |||||||||||||| |||||| |||| ||||  || ||||||||||| ||||||||||||||||    
T  29169441 taagccttactttcaggtgcccatgtggcaagggatatgagattctaatatgtgcaaacaattgttactacaagttggtctaga 29169524  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 1758914 - 1759032
Alignment:
Q  10 agaacctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgt 109  Q
    |||| |||| ||||| ||||||| ||| || ||  |||||||||||||||| ||||||||||||||||| ||||||||||| || |  || |||||||||    
T  1758914 agaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgt 1759013  T
Q  110 tattacaagttggtctaga 128  Q
    || |||||| || ||||||    
T  1759014 tactacaagctgatctaga 1759032  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 29426414 - 29426488
Alignment:
Q  49 ccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgttattacaagttggt 123  Q
    |||||||||||||||||||||||||||||| ||||||||||| || |  || ||||||||||| |||||||||||    
T  29426414 ccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggt 29426488  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 29250524 - 29250600
Alignment:
Q  47 agccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgttattacaagttggt 123  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| ||||  || |||||||| || |||||||||||    
T  29250524 agccttactttcaagtgtccatgcggcaagggatatgaggttctaatatgtgctaacaattgctactacaagttggt 29250600  T

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Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 27463092 - 27463210
Alignment:
Q  10 agaacctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgt 109  Q
    |||| |||| ||||| ||||||| ||| || ||  |||||||||||||||||||||||||||||||||| ||||||||||| || |  || |||||||||    
T  27463092 agaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgt 27463191  T
Q  110 tattacaagttggtctaga 128  Q
    || ||||||||||||||||    
T  27463192 tactacaagttggtctaga 27463210  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 27471691 - 27471809
Alignment:
Q  10 agaacctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgt 109  Q
    |||| |||| ||||| ||||||| ||| || ||  |||||||||||||||||||||||||||||||||| ||||||||||| || |  || |||||||||    
T  27471691 agaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgt 27471790  T
Q  110 tattacaagttggtctaga 128  Q
    || ||||||||||||||||    
T  27471791 tactacaagttggtctaga 27471809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 27483464 - 27483582
Alignment:
Q  10 agaacctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgt 109  Q
    |||| |||| ||||| ||||||| ||| || ||  |||||||||||||||||||||||||||||||||| ||||||||||| || |  || |||||||||    
T  27483464 agaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgt 27483563  T
Q  110 tattacaagttggtctaga 128  Q
    || ||||||||||||||||    
T  27483564 tactacaagttggtctaga 27483582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 27519932 - 27519814
Alignment:
Q  10 agaacctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgt 109  Q
    |||| |||| ||||| ||||||| ||| || ||  |||||||||||||||||||||||||||||||||| ||||||||||| || |  || |||||||||    
T  27519932 agaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgt 27519833  T
Q  110 tattacaagttggtctaga 128  Q
    || ||||||||||||||||    
T  27519832 tactacaagttggtctaga 27519814  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 18987849 - 18987932
Alignment:
Q  45 taagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgttattacaagttggtctaga 128  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| || |  || ||||||||||| ||||||||||||||||    
T  18987849 taagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctaga 18987932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 25520093 - 25520211
Alignment:
Q  10 agaacctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagccaacaattgt 109  Q
    |||| |||| ||||||||||||| ||| || ||  |||||||||||||||||||||||||| ||||||| ||||||||||| || |  || |||||||||    
T  25520093 agaagctgttagtgtagagtgggttgataagtgtttaagccttactttcaagtgtccatgtagcaagggatatgaggttctaatctgtgcaaacaattgt 25520192  T
Q  110 tattacaagttggtctaga 128  Q
    || ||||||||||| ||||    
T  25520193 tactacaagttggtgtaga 25520211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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