View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_79 (Length: 203)
Name: NF17087_low_79
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 35241077 - 35241223
Alignment:
| Q |
1 |
ccagggaagcattaaattagaaacggaagagtgtaaatttaaatcttgcagaaaatcattaacccattttcaatttagattaagtaactccatagatgtt |
100 |
Q |
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| T |
35241077 |
ccagggaagcattaaattagaaacggaagagtgtaaatttaaatcttgcggaaaatcattaacccattttcagtttagattaagtaactccatagatgtt |
35241176 |
T |
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| Q |
101 |
agatgtccagaagaattacgaaggtgggagtaagaacaagagattga |
147 |
Q |
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| T |
35241177 |
agatgtccaggagaattacgaaggtgagagtaagaacaagatattga |
35241223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 30594104 - 30593963
Alignment:
| Q |
5 |
ggaagcattaaattagaaacggaagagtgtaaatttaaatcttgcagaaaatcattaacccattttcaatttagattaagtaactccatagatgttagat |
104 |
Q |
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| T |
30594104 |
ggaagcattaaattagaaatggaagagtgtaaatttaaatcttgcggaaagtcatta-cccattttcaatttagattaagtaactccatagatgttagat |
30594006 |
T |
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| Q |
105 |
gtccagaagaattacgaaggtgggagtaagaacaagagattga |
147 |
Q |
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| T |
30594005 |
gtccaggagaattacgaaggtgggagtaagaacaagagattga |
30593963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 3 - 147
Target Start/End: Complemental strand, 16050029 - 16049881
Alignment:
| Q |
3 |
agggaagcattaaattagaaacggaagagtgtaaatttaa----atcttgcagaaaatcattaacccattttcaatttagattaagtaactccatagatg |
98 |
Q |
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| T |
16050029 |
agggaagcattaaattagaagcggaagagtctaaatttaattaaatcttgcggaaaatcattaacccattttcaatttagattaagtaactccatagatg |
16049930 |
T |
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| Q |
99 |
ttagatgtccagaagaattacgaaggtgggagtaagaacaagagattga |
147 |
Q |
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| T |
16049929 |
ttagatgtgcaggagaattacgaaggtgggagtaagaacaagagattga |
16049881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 32966362 - 32966268
Alignment:
| Q |
51 |
gaaaatcattaacccattttcaatttagattaagtaactccatagatgttagatgtccagaagaattacgaaggtgggagtaagaacaagagatt |
145 |
Q |
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| T |
32966362 |
gaaaatcattaacacaatttcaatttagattaaacaacttcatagatgttagatgtccaggagaattatgaaggtgggagcaagaacaagagatt |
32966268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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