View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17087_low_8 (Length: 551)
Name: NF17087_low_8
Description: NF17087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17087_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 15 - 489
Target Start/End: Original strand, 43381905 - 43382380
Alignment:
| Q |
15 |
cacagacacgaca-tgagacaccgactcgagtaataatttaagaaaattataaattgaatgtaatcatgtgtgtcggtattgtgtccgtgtcggacaccg |
113 |
Q |
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| T |
43381905 |
cacagacacgacactgagacatcgactcgagcaataatttaagaaaattataaattgaatgtaatcatgtgtgtcggtattgtgtccgtgtcggacactg |
43382004 |
T |
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| Q |
114 |
gcacatgttatacatgccttcaattaggattgttggtgctacagagctgtcagatcatgaataaggacataaggtagcaaaactaaaactgcggtgaatc |
213 |
Q |
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| T |
43382005 |
gcacatgttatacatgccttcaattaggattgttggtgctacagagctgtcagatcatgaataaggacataaggtagcaaaactaaaactgtggtgaatc |
43382104 |
T |
|
| Q |
214 |
acatatgtaggagggcattttattagaaccacattacaaaaatgatacgcatttaattgtattctctttagcctgatttgtatgctaagattatgtacaa |
313 |
Q |
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| T |
43382105 |
acatatgtaggagggcattttattagaaccacattacaaaaatgatacgcatttaattgtattctctttagcctgatttgtatgctaagattatgtacaa |
43382204 |
T |
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| Q |
314 |
attaacaatttatatgtacttgtttgcatgtgcgcgggtggtcgtactgtctatttatgcatacagatagcacacggatactattcgcatgcgtatttgt |
413 |
Q |
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| T |
43382205 |
atcaacaatttatatgtacttgtttgcatgtgcgcgggtggtcgtactgtctatttatgcatacagatagcacacggatactattcgcatgcctatttgt |
43382304 |
T |
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| Q |
414 |
gtatgcatggatgtatatattatcatattagttaatgtctactgggtaaacttcttcaggaattcttcttctggca |
489 |
Q |
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| T |
43382305 |
gtatgcatggatgtatatattatcatactagttaatgtctactgggtaaacttcttcaggaattctttttctggca |
43382380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 439 - 534
Target Start/End: Original strand, 43382613 - 43382708
Alignment:
| Q |
439 |
tattagttaatgtctactgggtaaacttcttcaggaattcttcttctggcagaggtgcttactcgtattaactcaatatctctagacagtaaaact |
534 |
Q |
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| T |
43382613 |
tattagtgaatgtctactggataaacttcttcaggaattcttcttctggcagaggtgcttactcgtattaactcaatatctctagacagtaaaact |
43382708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 447 - 534
Target Start/End: Original strand, 37150972 - 37151059
Alignment:
| Q |
447 |
aatgtctactgggtaaacttcttcaggaattcttcttctggcagaggtgcttactcgtattaactcaatatctctagacagtaaaact |
534 |
Q |
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| T |
37150972 |
aatgtctactggataaatttcttcaggaattcttcttctggcggaggtgcttactcgcatcaattcaatatctcttgacagtaaaact |
37151059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 37150777 - 37150843
Alignment:
| Q |
269 |
attgtattctctttagcctgatttgtatgctaagattatgtacaaattaacaatttatatgtacttgt |
336 |
Q |
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| T |
37150777 |
attggattctctttagcctgatttgtatgctaa-agtttgtactagttgataatttatatgtacttgt |
37150843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 3109746 - 3109695
Alignment:
| Q |
63 |
ataaattgaatgtaatcatgtgtgtcggtattgtgtccgtgtcggacaccgg |
114 |
Q |
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| T |
3109746 |
ataaattgaatgtaatcatatgtgtcggtgttgtgccagtgtaggacaccgg |
3109695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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