View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17088_high_3 (Length: 246)
Name: NF17088_high_3
Description: NF17088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17088_high_3 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 45035913 - 45035693
Alignment:
| Q |
16 |
atgtaaagatttgttaaagcagtataacaaagaatgatcaaaagtgaaacatatggaatcaaagcacacgattgtactagcttttaccaaaacaatgggc |
115 |
Q |
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| T |
45035913 |
atgtaaagatttgttaaagccgtataacaaagaatgatcaaaagtgaaacatatggaatcaaagcaaacgattgtactagcttttaccaaaacaatggga |
45035814 |
T |
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| Q |
116 |
tgaaatttgaatcatgtacaatcatgtacagcaaatccaaatataaaaactaatacggttaacaacatattttgagacaatactagccttcattaataga |
215 |
Q |
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| T |
45035813 |
tgaaatttgaatcatgtaca----------gcaaatccaaatataaaaactaatacggttaacaacatattttgagacattactagccttcattaataga |
45035724 |
T |
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| Q |
216 |
aatatagaaggatttatttcataagatgctt |
246 |
Q |
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| T |
45035723 |
aatatagaaggatttatttcataagatgctt |
45035693 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 45027494 - 45027540
Alignment:
| Q |
200 |
agccttcattaatagaaatatagaaggatttatttcataagatgctt |
246 |
Q |
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| T |
45027494 |
agccttcattaatagatatatagaaggatttatttcataagatgctt |
45027540 |
T |
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