View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17088_high_5 (Length: 221)
Name: NF17088_high_5
Description: NF17088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17088_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 45035344 - 45035142
Alignment:
| Q |
1 |
acagtaaaaaatggcctcagaggtagtgacaattagcatatatcgatcaagtaacagatctggtaatacgtgcaaataatacatcattggccacatcaat |
100 |
Q |
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| T |
45035344 |
acagtaaaaaatggcctcagaggtagtgacaattagcatatatcgatcaagtaacagatctggtaatacgtgcaaataatacatcattggccacatcaat |
45035245 |
T |
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| Q |
101 |
actatttttccttaagaacacaatcaatgcatttcattgtcaatcatagtgttaaatttgaaaactgaagttggaaacacaattccaaagtactagtaca |
200 |
Q |
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| T |
45035244 |
actatttttccttaagaacacaatcaatgcatttcattgtcaatcatagtgttaaatttgaaaactgaagttggaaacacaattccaaagtactagtata |
45035145 |
T |
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| Q |
201 |
tta |
203 |
Q |
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||| |
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| T |
45035144 |
tta |
45035142 |
T |
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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 45027684 - 45027773
Alignment:
| Q |
4 |
gtaaaaaatggcctcagaggtagtgacaattagcatatatcgatcaagtaacagatctggtaatacgtgcaaataatacatcattggcca |
93 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||| |||| | ||||||||||||||||||||| ||||||||||||||||| |
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| T |
45027684 |
gtaacaaatggcctcagaggtagtgacaattagcatttatcaatcacacagcagatctggtaatacgtgcaagtaatacatcattggcca |
45027773 |
T |
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