View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17088_low_2 (Length: 380)

Name: NF17088_low_2
Description: NF17088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17088_low_2
NF17088_low_2
[»] chr1 (12 HSPs)
chr1 (17-372)||(48661045-48661400)
chr1 (20-372)||(48666640-48666995)
chr1 (27-320)||(48656077-48656373)
chr1 (21-372)||(48584824-48585175)
chr1 (20-148)||(48652598-48652726)
chr1 (163-320)||(48618530-48618687)
chr1 (163-320)||(48652768-48652925)
chr1 (163-320)||(11546879-11547036)
chr1 (20-148)||(48618729-48618857)
chr1 (16-148)||(48628399-48628531)
chr1 (33-168)||(11546722-11546857)
chr1 (264-321)||(48628612-48628669)
[»] chr3 (2 HSPs)
chr3 (21-142)||(19666091-19666212)
chr3 (163-320)||(19665886-19666043)
[»] chr8 (3 HSPs)
chr8 (24-148)||(27227637-27227761)
chr8 (20-142)||(27223442-27223564)
chr8 (164-308)||(27227816-27227960)


Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 372
Target Start/End: Original strand, 48661045 - 48661400
Alignment:
Q  17 aattgcttccatcgatgaattccaaccacaatgtgttatgaaacatgccactgaagaatgagcaagtacttgttcttgtggactccatttcactactttt 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48661045 aattgcttccatcgatgaattccaaccacaatgggttatgaaacatgccactgaagaatgagcaagtacttgttcttgtggactccatttcactactttt 48661144  T
Q  117 cctctcccacttgtttcctccaagaagccatcggggaaaacatgttgttttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaattt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48661145 cctctcccacttgtttcctccaagaagccatcggggaaaacatgttgttttaatacccacaaaaacgagacttgagaattcaataacccatatgcaattt 48661244  T
Q  217 cgttaacttgttcttgagtatgattcacaatagtcccaaaagaaatataaactacagaaccttttggctttgtgtttagccactctataatagtagaatc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48661245 cgttaacttgttcttgagtatgattcacaatagtcccaaaagaaatataaactacagaaccttttggctttgtgtttagccactctataatagtagaatc 48661344  T
Q  317 atcattactcttagtgaaatcaccaagagtattgttgcttgctccgtttgcctttg 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48661345 atcattactcttagtgaaatcaccaagagtattgttgcttgctccatttgcctttg 48661400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 48666640 - 48666995
Alignment:
Q  20 tgcttccatcgatgaattccaaccacaatgtgttatgaaacatgccactgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcct 119  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||| |||||||||||||||    
T  48666640 tgcttccattgatgagttccaaccacaatgtgttatgaaacatgccactgatggatgagccaatacttgttcttgtggactccaattcactacttttcct 48666739  T
Q  120 ctcccacttgtttcctccaagaagccatcggggaaaacat---gttgttttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaattt 216  Q
    ||||||||||||||||||||||| ||||  || ||| |||   |||||||   | |||||||||| | ||||||||||| ||||||||||| ||| ||||    
T  48666740 ctcccacttgtttcctccaagaatccatacggcaaatcatcatgttgtttctttgcccacaaaaatgtgacttgagaatccaataacccatatgctattt 48666839  T
Q  217 cgttaacttgttcttgagtatgattcacaatagtcccaaaagaaatataaactacagaaccttttggctttgtgtttagccactctataatagtagaatc 316  Q
    | |  ||| ||||||||| | ||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||    
T  48666840 catacactagttcttgaggaagatacacaacagtaccaaaagaaatataaaccacagaaccttttggctttgtgtttagccactctataatattacaatc 48666939  T
Q  317 atcattactcttagtgaaatcaccaagagtattgttgcttgctccgtttgcctttg 372  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  48666940 atcattgctcttagtgaaatcaccaagtatattgttgcttgctccgtttgcctttg 48666995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 27 - 320
Target Start/End: Original strand, 48656077 - 48656373
Alignment:
Q  27 atcgatgaattccaaccacaatgtgttatgaaacatgccactgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccac 126  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48656077 atcgttgaattccaaccacaatgggttatgaaacatgccactgaaggatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccac 48656176  T
Q  127 ttgtttcctccaagaagccatcggggaa---aacatgttgttttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaac 223  Q
    ||||||||||||| || ||||  || ||   | |||| | |||   | |||| ||||| | ||||||||||||||||||||||| ||||||||| || ||    
T  48656177 ttgtttcctccaaaaatccatgaggcaaatcatcatgctttttctttgcccataaaaatgtgacttgagaattcaataacccatatgcaatttcattcac 48656276  T
Q  224 ttgttcttgagtatgattcacaatagtcccaaaagaaatataaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatca 320  Q
    ||||||| ||| | | | ||||||||||||||| |||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48656277 ttgttctggaggaagttgcacaatagtcccaaaggaaacataaaccacagaaccttttggctttgagtttagccactctataatagtagaatcatca 48656373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 21 - 372
Target Start/End: Original strand, 48584824 - 48585175
Alignment:
Q  21 gcttccatcgatgaattccaaccacaatgtgttatgaaacatgccactgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctc 120  Q
    ||||| || ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | | ||||||||||||| | ||| ||||| ||||    
T  48584824 gcttcaattgatgaattccaaccacaatgtgttatgaaacatgcaactgaaggatgagcaagtacatctacttgtggactccactccaccactttccctc 48584923  T
Q  121 tcccacttgtttcctccaagaagccatcggggaaaa---catgttgttttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttc 217  Q
    || || ||||||||||||| ||  |||| || ||||   || | |   |||||  ||||||||||||||||||||||||||||||||| | | |||||||    
T  48584924 tctcatttgtttcctccaaaaaatcatcaggcaaaacaccaggattgcttaatgaccacaaaaacgagacttgagaattcaataacccgtatacaatttc 48585023  T
Q  218 gttaacttgttcttgagtatgattcacaatagtcccaaaagaaatataaactacagaaccttttggctttgtgtttagccactctataatagtagaatca 317  Q
     || | ||||||||||| ||  || || | |||||| ||||| |  |||||||| ||| ||||||||||||||| |||||||||||| ||  ||  ||||    
T  48585024 attcatttgttcttgaggatagtttactagagtcccgaaagagacgtaaactacggaatcttttggctttgtgtctagccactctatgattttatcatca 48585123  T
Q  318 tcattactcttagtgaaatcaccaagagtattgttgcttgctccgtttgcctttg 372  Q
    ||||| ||||| | |||||||||| |   | ||||||||||||| ||||| ||||    
T  48585124 tcattgctcttggcgaaatcaccatg---aatgttgcttgctccttttgcatttg 48585175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 48652598 - 48652726
Alignment:
Q  20 tgcttccatcgatgaattccaaccacaatgtgttatgaaacatgccactgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcct 119  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  48652598 tgcttccattgatgaattccaaccacaatgtgttatgaagcatgccactgaaggatgagcaagtacttgttcttgtggactccattttacaacttttcct 48652697  T
Q  120 ctcccacttgtttcctccaagaagccatc 148  Q
    ||| ||||||||||||| ||||| |||||    
T  48652698 ctctcacttgtttcctctaagaacccatc 48652726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 163 - 320
Target Start/End: Complemental strand, 48618687 - 48618530
Alignment:
Q  163 gttttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaacttgttcttgagtatgattcacaatagtcccaaaagaaat 262  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| || ||||||||||| | |   | |||||||| ||||||||||||    
T  48618687 gttttaatacccacaaaaacgatacttgagaatccaataacccatatgcaatttcattcacttgttcttgtggaatgtacacaatagacccaaaagaaat 48618588  T
Q  263 ataaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatca 320  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  48618587 ataaaccacagaaccttttggctttgtgcttagccactctataatattacaatcatca 48618530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 163 - 320
Target Start/End: Original strand, 48652768 - 48652925
Alignment:
Q  163 gttttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaacttgttcttgagtatgattcacaatagtcccaaaagaaat 262  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| ||| ||||| || ||||||||||||| | | | ||||| ||| |||||||||||    
T  48652768 gttttaatacccacaaaaacgatacttgagaatccaataacccatatgctatttcattcacttgttcttgaggaaggtacacaacagtaccaaaagaaat 48652867  T
Q  263 ataaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatca 320  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||||| || ||||||||    
T  48652868 ataaaccacagaaccttttgtctttgagtttagccactctataatattacaatcatca 48652925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 163 - 320
Target Start/End: Original strand, 11546879 - 11547036
Alignment:
Q  163 gttttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaacttgttcttgagtatgattcacaatagtcccaaaagaaat 262  Q
    |||||| |||||||||||| || ||||||||||  |||||||||| ||| ||||| || ||||||||||| | | | | |||||||||||||||||||||    
T  11546879 gttttagtacccacaaaaatgatacttgagaatctaataacccatatgctatttcattcacttgttcttgtggaaggtacacaatagtcccaaaagaaat 11546978  T
Q  263 ataaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatca 320  Q
    |||||| |||||| |||||||||||||||||||||||||||||||| || ||||||||    
T  11546979 ataaaccacagaatcttttggctttgtgtttagccactctataatattacaatcatca 11547036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 48618857 - 48618729
Alignment:
Q  20 tgcttccatcgatgaattccaaccacaatgtgttatgaaacatgccactgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcct 119  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||||||||    
T  48618857 tgcttccattgatgaattccaaccacaatgtgttatgaagcatgccactgaaggatgagcaagtacttcttcttgtggactccagttcaccacttttcct 48618758  T
Q  120 ctcccacttgtttcctccaagaagccatc 148  Q
    ||| ||||| || |||| ||||| |||||    
T  48618757 ctctcacttattccctctaagaacccatc 48618729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 48628399 - 48628531
Alignment:
Q  16 caattgcttccatcgatgaattccaaccacaatgtgttatgaaacatgccactgaagaatgagcaagtacttgttcttgtggactccatttcactacttt 115  Q
    ||||||||||||||| ||||||||| ||||||||||| | |||||||||||| |||| |||| |||||||||  |||||||||||||| ||||| |||||    
T  48628399 caattgcttccatcgttgaattccagccacaatgtgtcacgaaacatgccaccgaaggatgatcaagtacttcctcttgtggactccacttcaccacttt 48628498  T
Q  116 tcctctcccacttgtttcctccaagaagccatc 148  Q
    ||||| | ||||||||||||||||||| |||||    
T  48628499 tcctcactcacttgtttcctccaagaacccatc 48628531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 11546722 - 11546857
Alignment:
Q  33 gaattccaaccacaatgtgttatgaaacatgccactgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgttt 132  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||||| | ||||| ||||||||||||||||||||| |||||||||||| || ||||||    
T  11546722 gaattccaaccacaatgtgttatgaaacataccaatgaaggatgagccaatacttcttcttgtggactccatttcacaacttttcctctctcatttgttt 11546821  T
Q  133 cctccaagaagccatcggggaaaacatgttgtttta 168  Q
    |||| ||||| ||||  || |||||||||| |||||    
T  11546822 cctctaagaacccatttggcaaaacatgttctttta 11546857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 48628612 - 48628669
Alignment:
Q  264 taaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatcat 321  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||| || |||||||||    
T  48628612 taaacaacagaacctgttggctttgtgtgtagccactctataatactacaatcatcat 48628669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 19666212 - 19666091
Alignment:
Q  21 gcttccatcgatgaattccaaccacaatgtgttatgaaacatgccactgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctc 120  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  19666212 gcttccatcgacgaattccaaccacaatgtgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggactccaattcaccacttttcctc 19666113  T
Q  121 tcccacttgtttcctccaagaa 142  Q
    || || |||||||||| |||||    
T  19666112 tctcatttgtttcctctaagaa 19666091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 163 - 320
Target Start/End: Complemental strand, 19666043 - 19665886
Alignment:
Q  163 gttttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaacttgttcttgagtatgattcacaatagtcccaaaagaaat 262  Q
    |||||| |||||||||||| || || | ||||| ||||||||||||||||||||| || ||||||||||| | | | | ||||||||| |||||||||||    
T  19666043 gttttagtacccacaaaaatgaaacattagaatccaataacccatgtgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaaagaaat 19665944  T
Q  263 ataaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatca 320  Q
    |||||| |||||| | |||| ||||| ||||||||||||||||||| || ||||||||    
T  19665943 ataaacaacagaatcatttgcctttgagtttagccactctataatattacaatcatca 19665886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 27227637 - 27227761
Alignment:
Q  24 tccatcgatgaattccaaccacaatgtgttatgaaacatgccactgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcc 123  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||| | ||||||||| |||    
T  27227637 tccatcgacgagttccaaccacaatgtgtcatgaaacatgccactgaaggatgagctagtacttgttcttgtggacaccacttcgcaacttttcctttcc 27227736  T
Q  124 cacttgtttcctccaagaagccatc 148  Q
    |||| |||||||||||||| |||||    
T  27227737 cactagtttcctccaagaacccatc 27227761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 27223442 - 27223564
Alignment:
Q  20 tgcttccatcgatgaattccaaccacaatgtgttatgaaacatgccactgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcct 119  Q
    |||||||||||| || |||||||||||||||||||  || |||||||| |||| |||||| ||||||||||||||||||| ||| ||||| |||||||||    
T  27223442 tgcttccatcgacgagttccaaccacaatgtgttacaaagcatgccaccgaaggatgagctagtacttgttcttgtggacaccacttcaccacttttcct 27223541  T
Q  120 ctcccacttgtttcctccaagaa 142  Q
    |||||||| |||||||| |||||    
T  27223542 ctcccactagtttcctcgaagaa 27223564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 308
Target Start/End: Original strand, 27227816 - 27227960
Alignment:
Q  164 ttttaatacccacaaaaacgagacttgagaattcaataacccatgtgcaatttcgttaacttgttcttgagtatgattcacaatagtcccaaaagaaata 263  Q
    ||||| || ||||||||| ||||||||||||| |||||| ||||  |||||||| || ||||||||||||| | | | ||||||||||||||| || ||     
T  27227816 ttttagtatccacaaaaaggagacttgagaatccaataatccataggcaatttcattcacttgttcttgaggaaggtgcacaatagtcccaaatgagatg 27227915  T
Q  264 taaactacagaaccttttggctttgtgtttagccactctataata 308  Q
    || || |||||   || |||| ||| ||||| |||||||||||||    
T  27227916 tataccacagatgattgtggccttgagtttaaccactctataata 27227960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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