View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17088_low_3 (Length: 351)
Name: NF17088_low_3
Description: NF17088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17088_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 39264021 - 39263699
Alignment:
| Q |
11 |
cacagaaccattagctaacaacaacaatgaattgaacagcttcactattctgaaacctggttgatgaatacttagtattatagttcttcctctagtttca |
110 |
Q |
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| T |
39264021 |
cacagaaccattagctaacaacaacaatgaattgaacagcttcactattctgaaacctggttgatgaatacttagtattatagttcttcctctagtttca |
39263922 |
T |
|
| Q |
111 |
gccataaccttaagcatgtcaataatttgcaaagctgaagtactatcaagccctgaagttggttcgtcaagaatcaaaacttttggatcatgtatgactt |
210 |
Q |
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| T |
39263921 |
gccataaccttaagcatgtcaataatttgcaaagctgaagtactatcaagccctgaagttggttcatcaagaatcaaaacttttggatcatgtatgactt |
39263822 |
T |
|
| Q |
211 |
caacaccaatagaaactcttcgcctttcaccgcctgatatacctcggactcgatcatcaccaattctagtaccagcaacatgatcaagtccaagctcttt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39263821 |
caacaccaatagaaactcttcgcctttcaccgcctgatatacctcggactcgatcatcaccaattctagtaccagcaacatgatcaagtccaagctcttt |
39263722 |
T |
|
| Q |
311 |
aatcagtgacttgacccttgaac |
333 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
39263721 |
aatcagtgacttgacccttgaac |
39263699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 38 - 259
Target Start/End: Complemental strand, 44067727 - 44067506
Alignment:
| Q |
38 |
tgaattgaacagcttcactattctgaaacctggttgatgaatacttagtattatagttcttcctctagtttcagccataaccttaagcatgtcaataatt |
137 |
Q |
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| T |
44067727 |
tgaattcaacaacttcactatccggaacccgggttgatgaatacttagtattatagttcttcccctagattcagccatgactttcagcatatcaattatt |
44067628 |
T |
|
| Q |
138 |
tgcaaagctgaagtactatcaagccctgaagttggttcgtcaagaatcaaaacttttggatcatgtatgacttcaacaccaatagaaactcttcgccttt |
237 |
Q |
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|||| |||||| ||||| ||||| |||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||| | |
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| T |
44067627 |
tgcagagctgaggtactgtcaagacctgaagttgcttcatcaagaatcaacacttttggatcatgtatgacttcaacaccaatggaaacacggcgcctct |
44067528 |
T |
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| Q |
238 |
caccgcctgatatacctcggac |
259 |
Q |
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|||| || ||||| || ||||| |
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| T |
44067527 |
caccaccggatattccgcggac |
44067506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 32413474 - 32413517
Alignment:
| Q |
210 |
tcaacaccaatagaaactcttcgcctttcaccgcctgatatacc |
253 |
Q |
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||||||||||| |||||||| |||||||| |||||||||||||| |
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| T |
32413474 |
tcaacaccaatggaaactctacgcctttccccgcctgatatacc |
32413517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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