View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17088_low_4 (Length: 343)

Name: NF17088_low_4
Description: NF17088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17088_low_4
NF17088_low_4
[»] chr1 (7 HSPs)
chr1 (5-291)||(9175848-9176134)
chr1 (1-338)||(9202873-9203210)
chr1 (1-299)||(9114277-9114575)
chr1 (6-215)||(9157892-9158101)
chr1 (5-213)||(9164006-9164214)
chr1 (6-274)||(9220342-9220610)
chr1 (73-151)||(1840314-1840392)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 5 - 291
Target Start/End: Original strand, 9175848 - 9176134
Alignment:
Q  5 gaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattcctcatc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9175848 gaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagcttgtatagttatattcctcatc 9175947  T
Q  105 ataggtggaatatcaacttgacaacaaccaatacccgaacatattccgttttcaattctgtttcgagtaccgttgcatattgttaagcagccggtgtaat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9175948 ataggtggaatatcaacttgacaacaaccaatacccgaacatgctccgttttcaattctgtttcgagtaccgttgcatattgttaagcagccggtgtaat 9176047  T
Q  205 atctttctttgccgtaaatgcttctgagaacaccgagactgttacaaccaactgttaagaacttattttctctgggtgatatgctga 291  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9176048 atctttctttgtcgtaaatgcttctgagaacaccgagactgttacaaccaactgttaagaacttattttctctgggtgatatgctga 9176134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 9202873 - 9203210
Alignment:
Q  1 cagagaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9202873 cagagaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattcct 9202972  T
Q  101 catcataggtggaatatcaacttgacaacaaccaatacccgaacatattccgttttcaattctgtttcgagtaccgttgcatattgttaagcagccggtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  9202973 catcataggtggaatatcaacttgacaacaaccaatacccgaacatgctccgttttcgattctgtttcgagtaccgtcgcatattgttaagcaaccggtg 9203072  T
Q  201 taatatctttctttgccgtaaatgcttctgagaacaccgagactgttacaaccaactgttaagaacttattttctctgggtgatatgctgaacctgccgt 300  Q
    ||| || |||||||  ||||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| ||||| |||||| ||||| |    
T  9203073 taaaatgtttctttctcgtaagtgcttctgagaaaaccgatactgttacaaccaactgttaaaaacttattttctctggttgataagctgaatctgccat 9203172  T
Q  301 cattaatgcctaaagagggttgaaggtaacttccgtta 338  Q
    ||  |||| ||||| ||| ||||  |||||||||||||    
T  9203173 caaaaatgtctaaaaaggattgattgtaacttccgtta 9203210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 9114575 - 9114277
Alignment:
Q  1 cagagaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattcct 100  Q
    |||| |||||||||  |||||||||||||||||| ||||  ||||||| ||||||||| ||  |||  | | ||  | ||| || |||||||||||||||    
T  9114575 cagaaaaattataagctccatttttaacaacaaaagaatatctacatctcaaagattcattggaattaaaaaaagcaaaagcttctatagttatattcct 9114476  T
Q  101 catcataggtggaatatcaacttgacaacaaccaatacccgaacatattccgttttcaattctgtttcgagtaccgttgcatattgttaagcagccggtg 200  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||| |||| ||||||||||| |||||| ||||||| |||||||||||||| ||| ||    
T  9114475 catcttaggtggaatatcaacttcacaacaaccaataccagaacatgttccattttcaattctctttcgattaccgttacatattgttaagcaaccgatg 9114376  T
Q  201 taatatctttctttgccgtaaatgcttctgagaacaccgagactgttacaaccaactgttaagaacttattttctctgggtgatatgctgaacctgccg 299  Q
     ||||| |||| ||| ||||||||||  |||||| ||||  ||| | ||||||||||||||||||||| |||||| || |||||||||||||| |||||    
T  9114375 gaatatgtttccttgtcgtaaatgctgttgagaataccgtaactatcacaaccaactgttaagaacttgttttctttgcgtgatatgctgaacgtgccg 9114277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 9157892 - 9158101
Alignment:
Q  6 aaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattcctcatca 105  Q
    ||||||||||| |||| |||||||||||| ||||  ||||| |||||||| ||  |  |||   || ||| ||||| || |||| |||||||||||||||    
T  9157892 aaattataaaacccatctttaacaacaaatgaataactacaccccaaagaatccgtggaattaggaaaatcagaagcttctatacttatattcctcatca 9157991  T
Q  106 taggtggaatatcaacttgacaacaaccaatacccgaacatattccgttttcaattctgtttcgagtaccgttgcatattgttaagcagccggtgtaata 205  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||| || ||| |||| | ||| |||||  ||||    
T  9157992 taggtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttctattctgtttcgattaccattacatcttgtcaggcaaccggttgaata 9158091  T
Q  206 tctttctttg 215  Q
    | ||||||||    
T  9158092 tgtttctttg 9158101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 9164006 - 9164214
Alignment:
Q  5 gaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattcctcatc 104  Q
    ||||||||||||||||| |||||||||||| ||||  ||||| || ||||| ||  |  |||   || ||| | ||| ||||| | ||||||||||||||    
T  9164006 gaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtggaattaggaaaatcaaaagcttgtacacttatattcctcatc 9164105  T
Q  105 ataggtggaatatcaacttgacaacaaccaatacccgaacatattccgttttcaattctgtttcgagtaccgttgcatattgttaagcagccggtgtaat 204  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||  |||||| ||||||| ||| |||||||||| |||||  |||    
T  9164106 ataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcgattcgatttcgattaccgttacatcttgttaagcaaccggttgaat 9164205  T
Q  205 atctttctt 213  Q
    || ||||||    
T  9164206 atgtttctt 9164214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 9220342 - 9220610
Alignment:
Q  6 aaattataaaatccatttttaacaacaaacgaattgctacatcccaaagattcgtttaaatcgagataattagaagattgtatagttatattcctcatca 105  Q
    ||||||||  |||||| |||||||||||| ||||  ||||| |||||||| ||  |  |||   || ||| ||||  ||||| | |||||||||||||||    
T  9220342 aaattataggatccatctttaacaacaaatgaataactacaccccaaagaatccgtggaattaggaaaatcagaaacttgtacacttatattcctcatca 9220441  T
Q  106 taggtggaatatcaacttgacaacaaccaatacccgaacatattccgttttcaattctgtttcgagtaccgttgcatattgttaagcagccggtgtaata 205  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||||||||||   || ||| |||| |  ||| |||||||||| |||||  ||||    
T  9220442 tatgtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttcaatttgattccgattaccataacatcttgttaagcaaccggttgaata 9220541  T
Q  206 tctttctttgccgtaaatgcttctgagaacaccgagactgttacaaccaactgttaagaacttattttc 274  Q
    | |||||| |  |||||| ||  |||||  ||||  ||||| ||||||||| |||| |||||| |||||    
T  9220542 tgtttcttcgttgtaaatactgttgagataaccgtaactgtcacaaccaaccgttatgaacttgttttc 9220610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 1840392 - 1840314
Alignment:
Q  73 aattagaagattgtatagttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatattcc 151  Q
    |||||| || ||||||| ||||||  |||||  |||| |||||||||||||| ||||| || |||||||||||| ||||    
T  1840392 aattagtagcttgtatacttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatgttcc 1840314  T

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