View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17089_high_1 (Length: 310)

Name: NF17089_high_1
Description: NF17089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17089_high_1
NF17089_high_1
[»] chr4 (1 HSPs)
chr4 (1-294)||(43004958-43005248)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 43004958 - 43005248
Alignment:
Q  1 aggaagtgtatcatagtagaaaaggacaaaaagatgggcacatgctcacatgatttagcacatgaaaaactctataccccccagggttacgacaagaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43004958 aggaagtgtatcatagtagaaaaggacaaaaagatgggcacatgctcacatgatttagcacatgaaaaactctataccccccagggttacgacaagaact 43005057  T
Q  101 ccctgtgtgctacgtttatggtgaatatatataaatatagacttcaactatattctatatttcctttnnnnnnnnnncaaactatattctatatttgacc 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||           ||||||||||||||||||||||    
T  43005058 ccctgtgtgctacgtttatggtgaatatatataaatatatacttcaactatattctatatttcctttaaaaaaaa---aaactatattctatatttgacc 43005154  T
Q  201 cacctcttctatcatgattcgtatctatctttcatatattgtatttactttaatatacgtacttttgtcatgcaatggtagttgctcatgtctc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43005155 cacctcttctatcatgattcgtatctatctttcatatattgtatttacttcaatatacgtacttttgtcatgcaatggtagttgctcatgtctc 43005248  T

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