View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17089_high_3 (Length: 250)
Name: NF17089_high_3
Description: NF17089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17089_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 3426409 - 3426653
Alignment:
| Q |
6 |
aggagcagagacatgacaagaaagagtgatcatatccaagtatcaacttcatgttatgcttcaaaaatgtcaacatacatcgaggataagattacatgag |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3426409 |
aggaccagacacatgacaagaaagagtgatcatatccaagtatcaacttcgtgttatgcttcaaaaatgtcaacatacatcgaggataagattacatgag |
3426508 |
T |
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| Q |
106 |
cttgttggttctaaatattgtgtgttatgtaggtaaacagtttgtaagcaccacatggtcttctctttaaggtaatagacgtattctagatattctgctt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3426509 |
cttgttggttctaaatattgtgtgttatgtaggtaaacagattgtaagcaccacatggtcttctctttaaggtaatagacgtattctagatattctgctt |
3426608 |
T |
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| Q |
206 |
taagtgatcaacaaatcctaagcaccaaacaattattcgtttatt |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3426609 |
taagtgatcaacaaatcctaagcaccaaacaattattcgtttatt |
3426653 |
T |
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