View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17089_low_2 (Length: 464)

Name: NF17089_low_2
Description: NF17089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17089_low_2
NF17089_low_2
[»] chr7 (22 HSPs)
chr7 (56-448)||(6239745-6240133)
chr7 (302-387)||(18397984-18398068)
chr7 (10-55)||(9865596-9865642)
chr7 (265-448)||(32402510-32402687)
chr7 (162-244)||(41620266-41620348)
chr7 (18-55)||(37167033-37167070)
chr7 (324-376)||(15999378-15999430)
chr7 (324-449)||(14585438-14585560)
chr7 (10-55)||(45288092-45288138)
chr7 (10-55)||(45291428-45291474)
chr7 (138-219)||(32402398-32402481)
chr7 (10-56)||(20081594-20081641)
chr7 (10-55)||(4596878-4596924)
chr7 (18-56)||(9080375-9080413)
chr7 (18-56)||(11951279-11951317)
chr7 (10-55)||(17729973-17730019)
chr7 (18-55)||(4860992-4861029)
chr7 (20-61)||(10344610-10344651)
chr7 (18-55)||(11826393-11826430)
chr7 (137-191)||(41615651-41615707)
chr7 (23-55)||(13450733-13450765)
chr7 (307-387)||(41620414-41620494)
[»] chr4 (29 HSPs)
chr4 (55-448)||(27258210-27258598)
chr4 (88-449)||(40087724-40088083)
chr4 (133-448)||(21201070-21201380)
chr4 (102-354)||(44343741-44343988)
chr4 (89-385)||(35945533-35945824)
chr4 (75-244)||(2915829-2915998)
chr4 (10-56)||(12782105-12782152)
chr4 (18-56)||(38284378-38284416)
chr4 (10-55)||(52007385-52007431)
chr4 (18-55)||(19826701-19826738)
chr4 (18-55)||(27013229-27013266)
chr4 (18-56)||(15431163-15431201)
chr4 (18-56)||(15437777-15437815)
chr4 (10-55)||(19819950-19819996)
chr4 (18-56)||(44809867-44809905)
chr4 (18-55)||(24045020-24045057)
chr4 (18-55)||(29323979-29324016)
chr4 (18-55)||(34018662-34018699)
chr4 (18-55)||(48416411-48416448)
chr4 (324-424)||(2915658-2915754)
chr4 (10-47)||(40794200-40794238)
chr4 (18-55)||(15430729-15430766)
chr4 (18-55)||(15437343-15437380)
chr4 (18-55)||(27677929-27677966)
chr4 (18-55)||(40617787-40617824)
chr4 (18-55)||(44164001-44164038)
chr4 (18-55)||(48636709-48636746)
chr4 (18-55)||(52531796-52531833)
chr4 (18-50)||(34320807-34320839)
[»] chr6 (17 HSPs)
chr6 (88-447)||(25436753-25437103)
chr6 (95-429)||(25461758-25462088)
chr6 (304-448)||(29178727-29178868)
chr6 (137-244)||(29178931-29179040)
chr6 (10-55)||(10289186-10289232)
chr6 (17-55)||(12981150-12981188)
chr6 (10-55)||(28666130-28666176)
chr6 (18-55)||(2378435-2378472)
chr6 (18-55)||(15543215-15543252)
chr6 (18-56)||(22463514-22463552)
chr6 (18-55)||(5739153-5739190)
chr6 (18-55)||(9314767-9314804)
chr6 (18-55)||(11188798-11188835)
chr6 (18-55)||(21633551-21633588)
chr6 (18-55)||(28116940-28116977)
chr6 (18-55)||(28229800-28229837)
chr6 (18-55)||(30654648-30654685)
[»] chr8 (10 HSPs)
chr8 (102-447)||(8120553-8120893)
chr8 (18-56)||(16952997-16953035)
chr8 (18-56)||(18826797-18826835)
chr8 (166-244)||(27423251-27423329)
chr8 (18-55)||(10663011-10663048)
chr8 (18-55)||(31984107-31984144)
chr8 (18-60)||(13096045-13096087)
chr8 (18-55)||(17895490-17895527)
chr8 (18-55)||(20261647-20261684)
chr8 (18-55)||(21048277-21048314)
[»] chr1 (22 HSPs)
chr1 (132-443)||(16799001-16799304)
chr1 (72-446)||(39311806-39312171)
chr1 (137-449)||(25291739-25292045)
chr1 (10-55)||(21019322-21019367)
chr1 (18-55)||(2404722-2404759)
chr1 (18-55)||(41059197-41059234)
chr1 (18-59)||(42021717-42021758)
chr1 (18-55)||(45940621-45940658)
chr1 (10-56)||(21108347-21108394)
chr1 (17-56)||(22460405-22460444)
chr1 (307-377)||(1635953-1636023)
chr1 (18-56)||(28110282-28110320)
chr1 (18-55)||(37184746-37184783)
chr1 (18-55)||(47708780-47708817)
chr1 (12-55)||(45961663-45961707)
chr1 (17-56)||(49147112-49147151)
chr1 (17-55)||(22454281-22454319)
chr1 (18-55)||(2793299-2793336)
chr1 (18-55)||(3088698-3088735)
chr1 (18-55)||(20398067-20398104)
chr1 (18-55)||(23022806-23022843)
chr1 (18-54)||(27537176-27537212)
[»] chr2 (31 HSPs)
chr2 (96-449)||(15827944-15828290)
chr2 (92-449)||(42294801-42295150)
chr2 (265-449)||(38716514-38716694)
chr2 (164-429)||(26312726-26312991)
chr2 (322-449)||(15826375-15826499)
chr2 (18-56)||(31586786-31586824)
chr2 (18-55)||(9189535-9189572)
chr2 (18-55)||(37280559-37280596)
chr2 (18-55)||(43208772-43208809)
chr2 (147-244)||(38716085-38716184)
chr2 (10-56)||(5665829-5665876)
chr2 (12-55)||(16788389-16788432)
chr2 (18-56)||(25869834-25869872)
chr2 (18-56)||(40780657-40780695)
chr2 (18-55)||(8887842-8887879)
chr2 (18-55)||(9186306-9186343)
chr2 (18-55)||(25873203-25873240)
chr2 (18-55)||(25957326-25957363)
chr2 (18-55)||(38014636-38014673)
chr2 (132-244)||(34121709-34121820)
chr2 (10-56)||(43722903-43722950)
chr2 (10-55)||(10599951-10599997)
chr2 (10-55)||(13972767-13972813)
chr2 (18-56)||(25960552-25960590)
chr2 (18-56)||(42369583-42369621)
chr2 (18-55)||(3874482-3874519)
chr2 (18-55)||(24237554-24237591)
chr2 (18-55)||(25955819-25955856)
chr2 (18-55)||(30148608-30148645)
chr2 (18-55)||(31430601-31430638)
chr2 (10-53)||(13136764-13136808)
[»] chr5 (17 HSPs)
chr5 (93-213)||(624379-624500)
chr5 (302-445)||(623576-623717)
chr5 (18-55)||(21828004-21828041)
chr5 (18-55)||(41307408-41307445)
chr5 (10-56)||(25329455-25329502)
chr5 (16-55)||(25329509-25329548)
chr5 (10-55)||(7270241-7270287)
chr5 (10-55)||(28788355-28788401)
chr5 (18-55)||(14016999-14017036)
chr5 (18-55)||(17747617-17747654)
chr5 (18-55)||(21336705-21336742)
chr5 (18-55)||(40916852-40916889)
chr5 (324-399)||(9779672-9779747)
chr5 (18-56)||(34830976-34831014)
chr5 (18-56)||(41877646-41877684)
chr5 (18-55)||(12087152-12087189)
chr5 (18-55)||(26753583-26753620)
[»] chr3 (33 HSPs)
chr3 (329-446)||(896984-897098)
chr3 (10-54)||(9380012-9380057)
chr3 (10-56)||(53814970-53815017)
chr3 (18-56)||(538014-538052)
chr3 (10-55)||(16243166-16243212)
chr3 (18-56)||(20729440-20729478)
chr3 (10-55)||(34984712-34984758)
chr3 (10-55)||(54460367-54460413)
chr3 (18-55)||(10884018-10884055)
chr3 (18-55)||(23299516-23299553)
chr3 (18-55)||(41976321-41976358)
chr3 (18-55)||(43926124-43926161)
chr3 (405-449)||(17775604-17775648)
chr3 (405-449)||(19076905-19076949)
chr3 (19-55)||(29344737-29344773)
chr3 (19-55)||(31857055-31857091)
chr3 (10-56)||(10880775-10880822)
chr3 (18-56)||(6921889-6921927)
chr3 (18-56)||(24124785-24124823)
chr3 (18-56)||(50462418-50462456)
chr3 (18-55)||(2280742-2280779)
chr3 (18-55)||(2778015-2778052)
chr3 (18-55)||(2872853-2872890)
chr3 (18-55)||(3839790-3839827)
chr3 (18-55)||(6445634-6445671)
chr3 (18-55)||(7485860-7485897)
chr3 (18-55)||(8462521-8462558)
chr3 (18-55)||(9157508-9157545)
chr3 (18-55)||(24128063-24128100)
chr3 (18-55)||(28264992-28265029)
chr3 (18-55)||(42355299-42355336)
chr3 (18-55)||(45895658-45895695)
chr3 (18-55)||(49743788-49743825)
[»] scaffold0381 (1 HSPs)
scaffold0381 (18-55)||(6517-6554)
[»] scaffold0757 (1 HSPs)
scaffold0757 (10-56)||(4562-4609)
[»] scaffold0520 (1 HSPs)
scaffold0520 (10-55)||(4834-4880)
[»] scaffold1026 (1 HSPs)
scaffold1026 (18-55)||(2564-2601)
[»] scaffold0567 (1 HSPs)
scaffold0567 (18-55)||(7018-7055)
[»] scaffold0014 (1 HSPs)
scaffold0014 (18-55)||(226465-226502)
[»] scaffold0270 (3 HSPs)
scaffold0270 (10-56)||(4374-4421)
scaffold0270 (10-56)||(11504-11551)
scaffold0270 (10-55)||(1014-1060)
[»] scaffold0045 (1 HSPs)
scaffold0045 (26-60)||(88960-88994)
[»] scaffold0427 (1 HSPs)
scaffold0427 (18-55)||(4675-4712)
[»] scaffold0250 (1 HSPs)
scaffold0250 (18-55)||(18599-18636)
[»] scaffold0038 (1 HSPs)
scaffold0038 (18-55)||(30298-30335)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 56 - 448
Target Start/End: Original strand, 6239745 - 6240133
Alignment:
Q  56 agtgcacaatacacctagtggccattaggttcccaggaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttc 155  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  6239745 agtgcacaatacacctagtggccaccaggttcacaggaagctatgcgaagctataactctttacatttctccgtgggaagttctacgaagctatagcttc 6239844  T
Q  156 catatcagagttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttcacttgaatctctaattcannnnnnn 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||           
T  6239845 catatcagagttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttcacttgaatcaataattca-tttttt 6239943  T
Q  256 nacatgctctatttacttctgcattttactatttagaatcttacagccttgtctttgttatttgcctttttggatcttaaataattaaacttagcattta 355  Q
     ||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6239944 tacatgctttatttacttctgcattttactatttagattcttaaagccttgtctttgttattttcctttttggatcttaaataattaaacttagcattta 6240043  T
Q  356 gaaatacttagaacttatccacgacaatcctcatggtatcgatattctactacttactctttattacttgttgcgacagtttatacttgcact 448  Q
     ||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||| ||||    
T  6240044 aaaatacttagaacttatccacgacaatcctcatgggatcgatatt---ctacttactctttattacttgttgcgacagtttatacttccact 6240133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 18398068 - 18397984
Alignment:
Q  302 ccttgtctttgttatttgcctttttggatcttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcctc 387  Q
    |||||| ||||||||||| |||||||||||||||||| |||||| || ||||| |||||||||||||||||||||| |||||||||    
T  18398068 ccttgtatttgttatttgtctttttggatcttaaata-ttaaacctatcatttggaaatacttagaacttatccacaacaatcctc 18397984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 9865596 - 9865642
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  9865596 aatatcataaaaagactctaaaaatagcgaatgactgactgtcatca 9865642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 265 - 448
Target Start/End: Original strand, 32402510 - 32402687
Alignment:
Q  265 tatttacttctgcattttactatttagaatcttacagccttgtctttgttatttgcctttttggatcttaaataattaaacttagcatttagaaatactt 364  Q
    ||||||||| |||||||||||  |||| |||||| | |||| ||||||||||||| |  ||||||| || ||||| ||||||||   |||  ||||||||    
T  32402510 tatttacttatgcattttact--ttagtatcttaaaaccttatctttgttatttgtcactttggattttgaataactaaactta-agtttgaaaatactt 32402606  T
Q  365 agaacttatccacgacaatcctcatggtatcgatattctactacttactctttattacttgttgcgacagtttatacttgcact 448  Q
    |||||||||||||    |||||| ||| ||||||| |   ||| | |||||||||||||||||| |||||| || ||| |||||    
T  32402607 agaacttatccactttgatcctcgtgggatcgatact---ctattcactctttattacttgttgggacagtgtacactcgcact 32402687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 41620266 - 41620348
Alignment:
Q  162 agagttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttcacttgaatctctaa 244  Q
    ||||||||| ||||||||||||||||||||  ||| |||||||||| ||||| ||||| | |  |||| ||||||||||||||    
T  41620266 agagttgtaattttctaaatcatgcaaacctttatttttaccaagttaattcgttaactaaacgtttttacttgaatctctaa 41620348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 37167033 - 37167070
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37167033 aaaagactctaaaaatagcgaatgactgactgtcatca 37167070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 15999430 - 15999378
Alignment:
Q  324 tttggatcttaaataattaaacttagcatttagaaatacttagaacttatcca 376  Q
    |||||||||||||||| ||||||||||||||  ||||||||| ||||||||||    
T  15999430 tttggatcttaaataactaaacttagcatttgaaaatacttataacttatcca 15999378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 449
Target Start/End: Complemental strand, 14585560 - 14585438
Alignment:
Q  324 tttggatcttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcctcatggtatcgatattctactacttactctttattact 423  Q
    |||||||||||||||| || |||||||||||  ||||||||| |||||||||||  ||| | |  ||| ||||||| |    ||||||||||||||||||    
T  14585560 tttggatcttaaataactatacttagcatttgaaaatacttataacttatccactccaacctttgtgggatcgatact---ttacttactctttattact 14585464  T
Q  424 tgttgcgacagtttatacttgcactt 449  Q
    |||  ||| | | |||||||||||||    
T  14585463 tgtatcgataatgtatacttgcactt 14585438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 45288092 - 45288138
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  45288092 aatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45288138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 45291428 - 45291474
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  45291428 aatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 32402398 - 32402481
Alignment:
Q  138 gtacgaagctatagcttccata--tcagagttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaac 219  Q
    ||||||||||||||||| ||||  ||| |||||||| |||||||||| || ||| | | ||||||||| ||| |||||||||||    
T  32402398 gtacgaagctatagctttcataactcaaagttgtagctttctaaatcttgaaaagctccatctttaccgagttaattccttaac 32402481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 20081594 - 20081641
Alignment:
Q  10 aatatcataaaag-actctaaaaatagcgaatgactgactgtcatcaa 56  Q
    ||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  20081594 aatatcataaaaacactctaaaaatagtgaatgactgactgtcatcaa 20081641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 4596878 - 4596924
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| ||||||||||||| ||||||| ||||||||||||    
T  4596878 aatatcataaaaagactctaaaaataacgaatgattgactgtcatca 4596924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 9080413 - 9080375
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  9080413 aaaagactctaaaaataacgaatgactaactgtcatcaa 9080375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 11951279 - 11951317
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  11951279 aaaagactctaaaaataacgaatgacggactgtcatcaa 11951317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 17730019 - 17729973
Alignment:
Q  10 aatatcataaaag-actctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||| ||||||||||||| ||| |||||||||||||||    
T  17730019 aatatcataaaaggactctaaaaatagtgaaagactgactgtcatca 17729973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 4861029 - 4860992
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  4861029 aaaagactctagaaatagcgaatgacggactgtcatca 4860992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 10344651 - 10344610
Alignment:
Q  20 aagactctaaaaatagcgaatgactgactgtcatcaagtgca 61  Q
    ||||||||||||||||||||| |||||| |||||||| ||||    
T  10344651 aagactctaaaaatagcgaattactgacagtcatcaattgca 10344610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 11826393 - 11826430
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| | |||||||||||||||||    
T  11826393 aaaagactctaaaaatagtgcatgactgactgtcatca 11826430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 41615651 - 41615707
Alignment:
Q  137 tgtacgaagctatagcttccata--tcagagttgtagttttctaaatcatgcaaacc 191  Q
    |||||||||||||| ||||||||  |||||||||||  |||||||||| ||||||||    
T  41615651 tgtacgaagctataacttccataattcagagttgtaactttctaaatcttgcaaacc 41615707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 13450733 - 13450765
Alignment:
Q  23 actctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||| |||||||||||||||||||    
T  13450733 actctaaaaatagtgaatgactgactgtcatca 13450765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 387
Target Start/End: Original strand, 41620414 - 41620494
Alignment:
Q  307 tctttgttatttgcctttttggatcttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcctc 387  Q
    ||| |||| |||| | ||||||||| ||||||| ||||||||  ||||| ||||||||  |||||||||||  ||||||||    
T  41620414 tctctgttgtttgtcattttggatcataaataactaaacttaatatttaaaaatacttgaaacttatccacttcaatcctc 41620494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 55 - 448
Target Start/End: Complemental strand, 27258598 - 27258210
Alignment:
Q  55 aagtgcacaatacacctagtggccattaggttcccaggaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagctt 154  Q
    |||||||||| || || |||| |||  ||||| ||||||| ||||| ||| ||||| || | ||||||  ||||    ||||||||||||||||||||||    
T  27258598 aagtgcacaacactcccagtgaccaccaggttgccaggaaactatgtgaaactatagctttctacattattcctccaaaagttgtacgaagctatagctt 27258499  T
Q  155 ccatatcagagttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttcacttgaatctctaattcannnnnn 254  Q
    |||| ||||| |||||||||| |||||| ||||||||  |||||||  ||||| ||||||||||||||| ||||||| ||||||||||||   |          
T  27258498 ccatctcagaattgtagttttttaaatcttgcaaacctttatctttgtcaagttaattccttaaccacactttttcatttgaatctctaa---aaccttt 27258402  T
Q  255 nnacatgctctatttacttctgcattttacta-tttagaatcttacagccttgtctttgttatttgcctttttggatcttaaataattaaacttagcatt 353  Q
      ||||||| |||||| ||| ||||||||| | ||||| |||||| | |||||||||||||||| | ||||||| |||||||| || |||||||| ||||    
T  27258401 ttacatgctttatttagttccgcattttacgactttagtatcttaaaaccttgtctttgttattagtctttttgaatcttaaacaactaaacttaacatt 27258302  T
Q  354 tagaaatacttagaacttatccacgacaatcctcatggtatcgatattctactacttactctttattacttgttgcgacagtttatacttgcact 448  Q
    |  |||||| ||||||||||| ||| |||||||||||| ||||||| |   ||||||||||||||||||||||||||||| | |||| |||||||    
T  27258301 tgaaaatacatagaacttatctacggcaatcctcatgggatcgatact---ctacttactctttattacttgttgcgacaatatataattgcact 27258210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 88 - 449
Target Start/End: Complemental strand, 40088083 - 40087724
Alignment:
Q  88 ccaggaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgca 187  Q
    ||||||||||||||||||||||| |||||||||| | |||| ||||||||||||||||||||||||| ||| | |||||||||| |||||||||| ||||    
T  40088083 ccaggaagctatgcgaagctatagctctttacatctttcctcgggaagttgtacgaagctatagctttcatcttagagttgtagctttctaaatcttgca 40087984  T
Q  188 aaccactatctttaccaagtcaattccttaaccacaatttttcacttgaatctctaattcannnnnnnnacatgctctatttacttctgcattttacta- 286  Q
    || | |||||||||||||||   ||||||||||||| |||||| ||||||||||||||||         ||||| | ||||||||| ||||||||||||     
T  40087983 aatctctatctttaccaagt---ttccttaaccacactttttcgcttgaatctctaattc---ctttttacatgttttatttacttatgcattttactac 40087890  T
Q  287 tttagaatcttacagccttgtctttgtta------tttgcctttttggatcttaaataattaaacttagcatttagaaatacttagaacttatccacgac 380  Q
    ||||| |||||| |  | |||||||||||      |||   |||||  ||||||||||||||||||||| ||||  || ||||||||||||||||||| |    
T  40087889 tttagtatcttaaaatcatgtctttgttatttttttttttttttttttatcttaaataattaaacttagtatttgaaagtacttagaacttatccacggc 40087790  T
Q  381 aatcctcatggtatcgatattctactacttactctttattacttgttgcgacagtttatacttgcactt 449  Q
    |||| || ||| ||| ||| |   ||||||| |||||||||||| |||||||| | || ||||||||||    
T  40087789 aatcttcgtgggatcaatact---ctacttattctttattacttattgcgacaatatacacttgcactt 40087724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 133 - 448
Target Start/End: Complemental strand, 21201380 - 21201070
Alignment:
Q  133 aagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttcac 232  Q
    |||||||||||||||||||||||||| ||||| | |||| ||| |||||| ||||||||  |||||||   |||| ||||||||||||||| |||||||     
T  21201380 aagttgtacgaagctatagcttccatctcagaatcgtagctttataaatcttgcaaacctttatctttgtgaagttaattccttaaccacactttttcat 21201281  T
Q  233 ttgaatctctaattcannnnnnnnacatgctctatttacttctgcattttacta-tttagaatcttacagccttgtctttgttatttgcctttttggatc 331  Q
    ||||||||||||   |        ||||||| |||||||||| ||||||||| | ||||| || ||| | |||||||||||||||| | ||||||| |||    
T  21201280 ttgaatctctaa---aacctttttacatgctttatttacttccgcattttacgactttagtattttataaccttgtctttgttattagtctttttgaatc 21201184  T
Q  332 ttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcctcatggtatcgatattctactacttactctttattacttgttgcga 431  Q
     |||| || | |||||| |||||  |||||| ||||||||||| ||| |||||||||||| ||||||| |   |||||||||||||||||||||||||||    
T  21201183 ctaaacaactcaacttaacatttgaaaatacatagaacttatctacggcaatcctcatgggatcgatact---ctacttactctttattacttgttgcga 21201087  T
Q  432 cagtttatacttgcact 448  Q
    || | ||||||||||||    
T  21201086 caatatatacttgcact 21201070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 102 - 354
Target Start/End: Complemental strand, 44343988 - 44343741
Alignment:
Q  102 gaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgcaaaccactatcttta 201  Q
    |||| ||||||||||| ||| | |  ||||||||||||| |||| |||| ||||||| ||| |||||||  |||||||||| |||||  | |||||||||    
T  44343988 gaagttataactctttgcatctttttttgggaagttgtatgaagttataacttccatttcaaagttgtacctttctaaatcttgcaagtctctatcttta 44343889  T
Q  202 ccaagtcaattccttaaccacaatttttcacttgaatctctaattcannnnnnnnacatgctctatttacttctgcattttact-atttagaatcttaca 300  Q
    |||||| ||||||||||||||| |||||||||| |||||||||  ||        ||||||| |||||| |  ||||| ||||| ||| || | |||| |    
T  44343888 ccaagttaattccttaaccacactttttcacttaaatctctaa--ca----ttttacatgctttatttaatcatgcatcttactaattcagtaccttaaa 44343795  T
Q  301 gccttgtctttgttatttgcctttttggatcttaaataattaaacttagcattt 354  Q
      |||||||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  44343794 aacttgtctttgttgtttgtctttttggatcttaaataattaaacttagtattt 44343741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 385
Target Start/End: Original strand, 35945533 - 35945824
Alignment:
Q  89 caggaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgcaa 188  Q
    |||||| |||||| ||| |||| |||||||||| | ||||   ||| || |||||  ||||||||||||||||||| |||||| |||||||||| ||||     
T  35945533 caggaaactatgcaaagttatagctctttacatctttcctcatgaaattttacgactctatagcttccatatcagatttgtagctttctaaatcttgcag 35945632  T
Q  189 accactatctttaccaagtcaattccttaaccacaatttttcacttgaatctctaattcannnnnnnnacatgctctatttacttctgcattttacta-t 287  Q
    ||| |||| |||||||| | |||||||||||||||  ||||| ||| |||||| |||||         |||||||| ||||||||||  ||||||||| |    
T  35945633 acctctatatttaccaatttaattccttaaccacatcttttcgcttaaatctccaattc---ctttttacatgctccatttacttctatattttactact 35945729  T
Q  288 ttagaatcttacagccttgtctttgttatttgcctttttggatcttaaataa-ttaaacttagcatttagaaatacttagaacttatccacgacaatcc 385  Q
    |||| ||     | | |||||||||||||| | ||||||| |||| |||||| |||||||||| ||||  ||||||||| |||||||| |||| |||||    
T  35945730 ttagtat----aaactttgtctttgttattcgtctttttgaatctcaaataatttaaacttagtatttgaaaatacttaaaacttatctacgataatcc 35945824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 75 - 244
Target Start/End: Complemental strand, 2915998 - 2915829
Alignment:
Q  75 ggccattaggttcccaggaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttt 174  Q
    |||||| ||||| | |||||| |||| |||||||||||| | ||||||| |  |  | ||||||||||||| | |||||| ||| |||||||||||| ||    
T  2915998 ggccatcaggttgctaggaagttatgtgaagctataactatctacattttttatcagaaagttgtacgaagttgtagctttcatctcagagttgtagctt 2915899  T
Q  175 tctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttcacttgaatctctaa 244  Q
    ||||| || || ||||  ||||||| ||||||| ||||| ||||| ||| |||||||||| |||||||||    
T  2915898 tctaactcttgaaaacttctatcttgaccaagttaattctttaacgacactttttcacttcaatctctaa 2915829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 12782152 - 12782105
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  12782152 aatatcataaaatgactctaaaaatagcgaatgactgactgtcatcaa 12782105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 38284378 - 38284416
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38284378 aaaagactctaaaaatagcgaatgactgactgtcatcaa 38284416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 52007385 - 52007431
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  52007385 aatatcataaaaagactctaaaaatagcgaatgactgactgtcatca 52007431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 19826738 - 19826701
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19826738 aaaagactctaaaaatagcgaatgactgactgtcatca 19826701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 27013266 - 27013229
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27013266 aaaagactctaaaaatagcgaatgactgactgtcatca 27013229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 15431201 - 15431163
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  15431201 aaaagactctaaaaatagtgaatgactgactgtcatcaa 15431163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 15437815 - 15437777
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  15437815 aaaagactctaaaaatagtgaatgactgactgtcatcaa 15437777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 19819996 - 19819950
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||    
T  19819996 aatatcataaaaagactttaaaaatagcgaatgactgactgtcatca 19819950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 44809867 - 44809905
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  44809867 aaaagactctaaaaatagcaaatgactgactgtcatcaa 44809905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 24045020 - 24045057
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  24045020 aaaagactctaaaaataacgaatgactgactgtcatca 24045057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 29324016 - 29323979
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  29324016 aaaagactctaaaaatagcaaatgactgactgtcatca 29323979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 34018662 - 34018699
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||||||||||| |||||||||||    
T  34018662 aaaagactctaaaaatagcgaatgacggactgtcatca 34018699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 48416411 - 48416448
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||||||||||| |||||||||||    
T  48416411 aaaagactctaaaaatagcgaatgacggactgtcatca 48416448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 2915754 - 2915658
Alignment:
Q  324 tttggatcttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcctcatggtatcgatattctactacttactctttattact 423  Q
    |||||||||||||||||||  ||||| |||| |||||||||||||| ||| |||  |||| || |||| ||||||| |   ||| |||||||||||||||    
T  2915754 tttggatcttaaataattatgcttag-atttggaaatacttagaacctattcacttcaattcttatgggatcgatact---ctatttactctttattact 2915659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 40794238 - 40794200
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgac 47  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  40794238 aatatcataaaaagactctaaaaatagcgaatgactgac 40794200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 15430729 - 15430766
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  15430729 aaaagactctgaaaataacgaatgactgactgtcatca 15430766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 15437343 - 15437380
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  15437343 aaaagactctgaaaataacgaatgactgactgtcatca 15437380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 27677929 - 27677966
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  27677929 aaaagactctaaaaatagtgaataactgactgtcatca 27677966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 40617787 - 40617824
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  40617787 aaaagactctcaaaatagcgaatgacggactgtcatca 40617824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 44164038 - 44164001
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  44164038 aaaagactttaaaaatagtgaatgactgactgtcatca 44164001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 48636746 - 48636709
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  48636746 aaaagactctaaaaataacgaatgacagactgtcatca 48636709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 52531796 - 52531833
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||||||||||| | |||||||||    
T  52531796 aaaagactctaaaaatagcgaatgacgggctgtcatca 52531833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 34320807 - 34320839
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgt 50  Q
    ||||||||||||||||||| |||||||||||||    
T  34320807 aaaagactctaaaaatagcaaatgactgactgt 34320839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 8e-62; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 88 - 447
Target Start/End: Complemental strand, 25437103 - 25436753
Alignment:
Q  88 ccaggaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgca 187  Q
    |||||||||||||||||| |||||| |||||||| | |||| ||||||||||| ||||||||||||||||| | |||||||||  |||||||||| ||      
T  25437103 ccaggaagctatgcgaagttataacactttacatctttcctcgggaagttgtatgaagctatagcttccatcttagagttgtaactttctaaatcttgtg 25437004  T
Q  188 aaccactatctttaccaagtcaattccttaaccacaatttttcacttgaatctctaattcannnnnnnnacatgctctatttacttctgcattttacta- 286  Q
    || | ||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |||         ||||||| ||||||||||||||||||||||     
T  25437003 aatctctatctttaccaagttaattcctcaaccacactttttcacttgaatctctatttc---ctttttacatgctttatttacttctgcattttactac 25436907  T
Q  287 tttagaatcttacagccttgtctttgttatttgcctttttggatcttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcct 386  Q
    ||||| ||| || | ||||||| ||| |||||  | ||||||||||||||     ||| |||| ||||  || |||||||||||||||||| ||||||||    
T  25436906 tttagcatcataaaaccttgtccttgctatttatcgttttggatcttaaa----aaaatttagtatttgaaagtacttagaacttatccacaacaatcct 25436811  T
Q  387 catggtatcgatattctactacttactctttattacttgttgcgacagtttatacttgcac 447  Q
    | ||| |||||||  ||| |||||||||||||| ||||||||||||| | |||||||||||    
T  25436810 cgtgggatcgata--cta-tacttactctttatcacttgttgcgacaatgtatacttgcac 25436753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 95 - 429
Target Start/End: Complemental strand, 25462088 - 25461758
Alignment:
Q  95 gctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgcaaaccact 194  Q
    |||||| ||||||||| |||||||||| | |||| || |||||||| |||||||||||||| || ||| |||||||  |||||||||| || ||| | ||    
T  25462088 gctatgtgaagctatagctctttacatatttcctcggaaagttgtatgaagctatagcttctatctcatagttgtaaatttctaaatcttgtaaatctct 25461989  T
Q  195 atctttaccaagtcaattccttaaccaca-atttttcacttgaatctctaattcannnnnnnnacatgctctatttacttctgcattttacta-tttaga 292  Q
    ||||||||||||| ||||||||| | |||  |||||||||||||||||||||||         ||||||| |||||| ||||||||||||||| |||||     
T  25461988 atctttaccaagttaattccttagctacacttttttcacttgaatctctaattc---ttttttacatgctttatttatttctgcattttactactttagt 25461892  T
Q  293 atcttacagccttgtctttgttatttgcctttttggatcttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcctcatggt 392  Q
    |||||| | ||||||| ||  |||||  ||||||| || |||||||||||||||||| ||||  || ||||||||||||||||| | |||||||| |||     
T  25461891 atcttagaaccttgtccttaatatttctctttttgaattttaaataattaaacttagtatttgaaagtacttagaacttatccatgtcaatcctcgtggg 25461792  T
Q  393 atcgatattctactacttactctttattacttgttgc 429  Q
    ||||||| |   | |||||||||||||||||| ||||    
T  25461791 atcgatact---ccacttactctttattacttattgc 25461758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 304 - 448
Target Start/End: Complemental strand, 29178868 - 29178727
Alignment:
Q  304 ttgtctttgttatttgcctttttggatcttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcctcatggtatcgatattct 403  Q
    ||||||||||| |||  | |||||||  |||| ||  ||||||||| ||||  |||||||||||||||||||||  |||||||| ||| ||||||||||     
T  29178868 ttgtctttgttgtttatcattttggacattaactacctaaacttagtatttgaaaatacttagaacttatccacttcaatcctcgtgggatcgatattc- 29178770  T
Q  404 actacttactctttattacttgttgcgacagtttatacttgcact 448  Q
      ||||| ||||||||||||| |||||||||| ||||| ||||||    
T  29178769 --tacttgctctttattacttattgcgacagtgtatacctgcact 29178727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 29179040 - 29178931
Alignment:
Q  137 tgtacgaagctatagcttccatatc--agagttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttcactt 234  Q
    |||| ||||||||| |||||||| |  |||||||||   ||||||||| | |||||| ||||||||| ||| | |||| ||||||||||  |||||||||    
T  29179040 tgtatgaagctataacttccataacttagagttgtaacgttctaaatcttacaaacctctatctttatcaaattaatttcttaaccacatattttcactt 29178941  T
Q  235 gaatctctaa 244  Q
    ||||||||||    
T  29178940 gaatctctaa 29178931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 10289232 - 10289186
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||    
T  10289232 aatatcataaaaagactctaaaaatagcgaatgacttactgtcatca 10289186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 12981150 - 12981188
Alignment:
Q  17 taaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  12981150 taaaagactctaaaaatagtgaatgactgactgtcatca 12981188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 28666130 - 28666176
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  28666130 aatatcataaaaagactctaaaaataacgaatgactgactgtcatca 28666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 2378472 - 2378435
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||||||||||| |||||||||||    
T  2378472 aaaagactctaaaaatagcgaatgacggactgtcatca 2378435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 15543252 - 15543215
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||||||||||| |||||||||||    
T  15543252 aaaagactctaaaaatagcgaatgacggactgtcatca 15543215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 22463552 - 22463514
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  22463552 aaaagactctaaaaatagtgtatgactgactgtcatcaa 22463514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 5739153 - 5739190
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  5739153 aaaaaactctaaaaatagtgaatgactgactgtcatca 5739190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 9314767 - 9314804
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| | |||||||||||||||||    
T  9314767 aaaagactctaaaaatagtgtatgactgactgtcatca 9314804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 11188798 - 11188835
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||||||||||  |||||||||||    
T  11188798 aaaagactctaaaaatagcgaatgatggactgtcatca 11188835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 21633588 - 21633551
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| | |||||||||||||||||    
T  21633588 aaaagactctaaaaatagtgtatgactgactgtcatca 21633551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 28116977 - 28116940
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| | |||||||||||||||||    
T  28116977 aaaagactctaaaaatagtgtatgactgactgtcatca 28116940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 28229837 - 28229800
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  28229837 aaaagactctcaaaatagcgaatgacggactgtcatca 28229800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 30654685 - 30654648
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  30654685 aaaagactctagaaatagcgaatgacggactgtcatca 30654648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 102 - 447
Target Start/End: Original strand, 8120553 - 8120893
Alignment:
Q  102 gaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgcaaaccactatcttta 201  Q
    ||||||||| | |||||||| | ||||  ||||||||||||||||||||  |||| | ||| | |||||| |||||||||| ||||||||  ||||||||    
T  8120553 gaagctatatcactttacatctttcctctggaagttgtacgaagctataaattccttctcaaaattgtagctttctaaatcttgcaaacctttatcttta 8120652  T
Q  202 ccaagtcaattccttaaccacaatttttcacttgaatctctaattcannnnnnnnacatgctctatttacttctgcattttacta-tttagaatcttaca 300  Q
    |||||| || |||||||||||| ||||| |||||||||||||||||         ||||||| |||||||||||||||||||||| ||||  |||||| |    
T  8120653 ccaagttaactccttaaccacatttttt-acttgaatctctaattc---ctttttacatgctttatttacttctgcattttactactttactatcttaaa 8120748  T
Q  301 gccttgtctttgttatttgcctttttggatcttaaataattaaactt-agcatttagaaatacttagaacttatccacgacaatcctcatggtatcgata 399  Q
     | |||| ||||||||||| ||| ||||||||||||||||||||||| | ||||  ||||||||| ||||||||||| || ||||||  ||| |||||||    
T  8120749 acattgtttttgttatttgtcttgttggatcttaaataattaaacttaatcattcggaaatactttgaacttatccatgataatccttgtgggatcgata 8120848  T
Q  400 ttctactacttactctttattacttgttgcgacagtttatacttgcac 447  Q
     |   | |||||||||||||||||||||| || ||| |||||||||||    
T  8120849 ct---caacttactctttattacttgttgtgatagtgtatacttgcac 8120893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 16953035 - 16952997
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  16953035 aaaagactctaaaaatagcgaatgacggactgtcatcaa 16952997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 18826797 - 18826835
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  18826797 aaaagactctaaaaatagcaaatgactgactgtcatcaa 18826835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 27423329 - 27423251
Alignment:
Q  166 ttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttcacttgaatctctaa 244  Q
    |||||| |||||||||| | |||||   ||| ||||| |||| |||| |||||||||| ||||||||||||||||||||    
T  27423329 ttgtagctttctaaatcttacaaacatttatttttactaagttaatttcttaaccacactttttcacttgaatctctaa 27423251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 10663048 - 10663011
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| |||||||||||||||||||    
T  10663048 aaaagactctaaaaatagtgaatgactgactgtcatca 10663011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 31984144 - 31984107
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  31984144 aaaagactctaaaaatagcgaatgattgactgtcatca 31984107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 13096087 - 13096045
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaagtgc 60  Q
    |||| ||||||||||||| |||| |||||||||||||||||||    
T  13096087 aaaaaactctaaaaatagtgaataactgactgtcatcaagtgc 13096045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 17895490 - 17895527
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  17895490 aaaagactctagaaatagcgaatgacggactgtcatca 17895527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 20261684 - 20261647
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| | |||||||||||||||||    
T  20261684 aaaagactctaaaaatagtgtatgactgactgtcatca 20261647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 21048314 - 21048277
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| | |||||||||||||||||    
T  21048314 aaaagactctaaaaatagtgtatgactgactgtcatca 21048277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 132 - 443
Target Start/End: Complemental strand, 16799304 - 16799001
Alignment:
Q  132 gaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttca 231  Q
    ||||||||| |||| |||| ||||||| |||| ||||||| |||||||||| |||||||| |||| |||||||||| |||||||| ||||||  ||||||    
T  16799304 gaagttgtatgaagttataacttccatctcagcgttgtagctttctaaatcttgcaaacctctatttttaccaagttaattcctttaccacacgttttca 16799205  T
Q  232 cttgaatctctaattcannnnnnnnacatgctctatttacttctgcattttactatttagaatcttacagccttgtctttgttatttgcctttttggatc 331  Q
    ||||||||||||||||          |||||  |||||| || | ||||||||  || ||||||||||| |||| |||||||| ||| |    |||||||    
T  16799204 cttgaatctctaattc---tttattgcatgccttatttagtttttcattttac--ttaagaatcttacaaccttatctttgttctttacacccttggatc 16799110  T
Q  332 ttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcctcatggtatcgatattctactacttactctttattacttgttgcga 431  Q
    |||||||| |||||||| |||||  ||||||||||||||||||||| ||||| ||  ||| ||  |||||   |||||||||||||||||||||||||||    
T  16799109 ttaaataactaaacttaccatttgaaaatacttagaacttatccactacaattcttgtgggataaatatt---ctacttactctttattacttgttgcga 16799013  T
Q  432 cagtttatactt 443  Q
     ||| |||||||    
T  16799012 tagtgtatactt 16799001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 72 - 446
Target Start/End: Complemental strand, 39312171 - 39311806
Alignment:
Q  72 agtggccattaggttcccaggaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtag 171  Q
    ||||||||  ||||| | |||||||||||||||||||||  |   ||||| | ||||  | ||||||||||||| |||| |||| ||  |||||||||||    
T  39312171 agtggccaccaggttgctaggaagctatgcgaagctatagtttgctacatctttcctcagaaagttgtacgaagttatatcttcaatcacagagttgtag 39312072  T
Q  172 ttttctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttcacttgaatctctaattcannnnnnnnacatgctctatttac 271  Q
     |||||||||| |||||||| ||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||          | ||||| ||| |||    
T  39312071 ctttctaaatcttgcaaacctctatctttatcaagttaattccttaaccacactttttcacttgaatctctaatt----tcttttatatgctttatctac 39311976  T
Q  272 ttctgcattttact-atttagaatcttacagccttgtctttgtta-tttgcctttttggatcttaaataattaaacttagcatttagaaatacttagaac 369  Q
    ||    ||||||||  || |  |||| | |  ||||||||  ||| |||| |||||| ||||||||||||||||||||||  |||  |||||||||||||    
T  39311975 tt----attttactgcttcaatatctaaaactcttgtcttcattattttgtctttttagatcttaaataattaaacttagtgtttgaaaatacttagaac 39311880  T
Q  370 ttatccacgacaatcctcatggtatcgatattctactacttactctttattacttgttgcgacagtttatacttgca 446  Q
    |||||||||||||||||| ||  |||||||||   ||||||||| ||||||| ||||| ||||| | ||||||||||    
T  39311879 ttatccacgacaatcctcgtgagatcgatatt---ctacttactttttattatttgttacgacaatgtatacttgca 39311806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 449
Target Start/End: Original strand, 25291739 - 25292045
Alignment:
Q  137 tgtacgaagctatagcttccata--tcagagttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttcactt 234  Q
    ||||||||||||||  |||||||  || ||| ||||| |||||||||| |||||||| ||||||| | ||||| |||| ||||||  ||  |||||||||    
T  25291739 tgtacgaagctataatttccataactctgagctgtagctttctaaatcttgcaaacctctatcttgatcaagttaattacttaactgcatcttttcactt 25291838  T
Q  235 gaatctctaattcannnnnnnnacatgctctatttacttctgcattttactatttagaatcttacagccttgtctttgttatttgcctttttggatctta 334  Q
    |||||||||| ||         ||||| | ||||||||  |||||||||  |||||| |||||| | | |  | ||||||||||| | ||||||||||||    
T  25291839 gaatctctaaatc---ctttttacatgttttatttactcttgcatttta--atttagtatcttaaaacttcatttttgttatttgtcattttggatctta 25291933  T
Q  335 aataattaaacttagcatttagaaatacttagaacttatccacgacaatcctcatggtatcgatattctactacttactctttattacttgttgcgacag 434  Q
    ||||| ||||||||| ||||  ||||||||| ||  | |||||  |||||||| ||| ||| ||| |    || |||||||||||||||||||||||||     
T  25291934 aataactaaacttagtatttgaaaatacttaaaatctgtccactccaatcctcgtgggatcaatact---ttatttactctttattacttgttgcgacaa 25292030  T
Q  435 tttatacttgcactt 449  Q
    | ||||||| |||||    
T  25292031 tgtatacttccactt 25292045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 21019322 - 21019367
Alignment:
Q  10 aatatcataaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21019322 aatatcataaaagactctaaaaatagcgaatgactgactgtcatca 21019367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 2404759 - 2404722
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2404759 aaaagactctaaaaatagcgaatgactgactgtcatca 2404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 41059197 - 41059234
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41059197 aaaagactctaaaaatagcgaatgactgactgtcatca 41059234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 42021758 - 42021717
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaagtg 59  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  42021758 aaaagactctaaaaatagcgaatgattgactgtcatcaagtg 42021717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 45940658 - 45940621
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45940658 aaaagactctaaaaatagcgaatgactgactgtcatca 45940621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 21108347 - 21108394
Alignment:
Q  10 aatatcataa-aagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||    
T  21108347 aatatcataagaagactctaaaaagagcgaatgactgactgtcatcaa 21108394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 22460405 - 22460444
Alignment:
Q  17 taaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  22460405 taaaagactctaaaaatagtgaatgactgactgtcatcaa 22460444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 1636023 - 1635953
Alignment:
Q  307 tctttgttatttgcctttttggatcttaaataattaaacttagcatttagaaatacttagaacttatccac 377  Q
    ||||||||||||| | |||||||| || ||||| |||||||||||||| |||||||  |||||||| ||||    
T  1636023 tctttgttatttgtcattttggattttgaataactaaacttagcatttggaaatacacagaacttaaccac 1635953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 28110320 - 28110282
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  28110320 aaaagactctaaaaatagcgaatgacggactgtcatcaa 28110282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 37184746 - 37184783
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||||||||||| |||||||||||    
T  37184746 aaaagactctaaaaatagcgaatgacggactgtcatca 37184783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 47708780 - 47708817
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| |||||||||||||||||||    
T  47708780 aaaagactctaaaaatagtgaatgactgactgtcatca 47708817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 45961663 - 45961707
Alignment:
Q  12 tatcataa-aagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  45961663 tatcataacaagactctaaaaatagcaaatgactgactgtcatca 45961707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 49147151 - 49147112
Alignment:
Q  17 taaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    ||||||||||||||||||| |||||| |||||||||||||    
T  49147151 taaaagactctaaaaatagtgaatgattgactgtcatcaa 49147112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 22454281 - 22454319
Alignment:
Q  17 taaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  22454281 taaaagattctaaaaatagtgaatgactgactgtcatca 22454319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 2793336 - 2793299
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  2793336 aaaagactctaaaaatagtgaacgactgactgtcatca 2793299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 3088698 - 3088735
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| | |||||||||||||||||    
T  3088698 aaaagactctaaaaatagtgcatgactgactgtcatca 3088735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 20398104 - 20398067
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  20398104 aaaagactctagaaatagcgaatgacggactgtcatca 20398067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 23022806 - 23022843
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  23022806 aaaagactctaaaaataacgaatgacggactgtcatca 23022843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 27537176 - 27537212
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatc 54  Q
    |||||||| |||||||||| |||||||||||||||||    
T  27537176 aaaagactataaaaatagcaaatgactgactgtcatc 27537212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 96 - 449
Target Start/End: Complemental strand, 15828290 - 15827944
Alignment:
Q  96 ctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgcaaaccacta 195  Q
    ||||| ||||||| |||||| |||||||  | | ||||||||||||||| |||||| |||||| |||||||||| | |||  ||||| |||||||  |||    
T  15828290 ctatgtgaagctacaactctctacattttacatcgggaagttgtacgaaactatagtttccatctcagagttgtggattttaaaatcttgcaaacatcta 15828191  T
Q  196 tctttaccaagtcaattccttaaccacaatttttcacttgaatctctaattcannnnnnnnacatgctctatt-tacttctgcattttacta-tttagaa 293  Q
    ||||||||||||   |||||||||||||  |||| ||| |||||||||||||         ||||||| |||| ||||| ||  |||| ||| ||||| |    
T  15828190 tctttaccaagt---ttccttaaccacatgtttttactcgaatctctaattc---ccttttacatgctttattatacttatgatttttgctactttagta 15828097  T
Q  294 tcttacagccttgtctttgttatttgcctttttggatcttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcctcatggta 393  Q
    ||||||  | |||||||||||||||| ||||||  |||| |||||||||||| ||| ||||| || |||||||||||||||| |||||||| || ||| |    
T  15828096 tcttactacattgtctttgttatttgtctttttttatctcaaataattaaacctagtatttaaaagtacttagaacttatcctcgacaatcgtcgtggga 15827997  T
Q  394 tcgatattctactacttactctttattacttgttgcgacagtttatacttgcactt 449  Q
    |||||| |   |||| |||||||| |||||||| || ||| | |||||||||||||    
T  15827996 tcgatact---ctacatactctttgttacttgtcgcaacaatgtatacttgcactt 15827944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 92 - 449
Target Start/End: Complemental strand, 42295150 - 42294801
Alignment:
Q  92 gaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgcaaacc 191  Q
    ||||||||| |||| ||||||||| ||| ||| | ||  ||||||||||| || ||||| ||||||| |  ||||||||| ||| |||||| | |||| |    
T  42295150 gaagctatgtgaaggtataactctatacgttttttctctggaagttgtaccaaactataacttccatctgcgagttgtagctttataaatcttacaaatc 42295051  T
Q  192 actatctttaccaagtcaattccttaaccacaatttttcacttgaatctctaattcannnnnnnnacatgctctatttacttctgcattttactatttag 291  Q
     |||| |||||||||| ||||||||||| | | |||||||| |||||||||||   |        ||||||| |||||||||||||||||||||  ||||    
T  42295050 tctatttttaccaagttaattccttaacaatactttttcacatgaatctctaa---attcttttgacatgctttatttacttctgcattttact--ttag 42294956  T
Q  292 aatcttacagccttgtctttgttatttgcctttttggatcttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcctcatgg 391  Q
    || |||| |  ||| |||||  |||||  |  ||||| |||||||||| |||||||||||||| ||||||||||  || |||||||  |||||||| | |    
T  42294955 aaccttaaaatcttatctttactatttttcactttgggtcttaaataactaaacttagcatttggaaatacttacgacctatccactccaatcctcgtcg 42294856  T
Q  392 tatcgatattctactacttactctttattacttgttgcgacagtttatacttgcactt 449  Q
     ||||||| |   ||||||||||||||||||||||| | ||||| |||||||||||||    
T  42294855 gatcgatact---ctacttactctttattacttgttacaacagtgtatacttgcactt 42294801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 265 - 449
Target Start/End: Original strand, 38716514 - 38716694
Alignment:
Q  265 tatttacttctgcattttactatttagaatcttacagccttgtctttgttatttgcctttttggatcttaaataattaaacttagcatttagaaatactt 364  Q
    |||||||||||| |||||||||||||||||| || |  ||| ||||||||||||| | ||||||||||||||||| ||||| ||||||||| ||||||||    
T  38716514 tatttacttctggattttactatttagaatcctaaaatcttatctttgttatttgtcattttggatcttaaataactaaacgtagcatttaaaaatactt 38716613  T
Q  365 agaacttatccacgacaatcctcatggtatcgatattctactacttactctttattacttgttgcgacagtttatacttgcactt 449  Q
    |||| |||| |||  |||||||  ||| | |||||||    |||||| ||||||||| ||||||| ||||| |||||||||||||    
T  38716614 agaatttattcactccaatccttgtgggaccgatatt---ttacttattctttattatttgttgc-acagtgtatacttgcactt 38716694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 164 - 429
Target Start/End: Original strand, 26312726 - 26312991
Alignment:
Q  164 agttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttcacttgaatctctaattcannnnnnnnacatgct 263  Q
    |||| ||| |||||||||| |||||||| ||||||||| ||||| ||||| |||||||||  |||||| |||||||||||| ||         ||||| |    
T  26312726 agttatagctttctaaatcgtgcaaacctctatctttagcaagttaattctttaaccacatcttttcaattgaatctctaaatc---ttttttacatgtt 26312822  T
Q  264 ctatttacttctgcattttactat------ttagaatcttacagccttgtctttgttatttgcctttttggatcttaaataattaaacttagcatttaga 357  Q
     ||||||||| ||||||||||| |      ||||||||||| |  ||| |||||||||||||   ||||||||||||||||| ||||||||||||||| |    
T  26312823 ttatttacttgtgcattttactttaatgtcttagaatcttaaaatcttatctttgttatttgttattttggatcttaaataactaaacttagcatttata 26312922  T
Q  358 aatacttagaacttatccacgacaatcctcatggtatcgatattctactacttactctttattacttgttgc 429  Q
    ||||||| ||||||||  ||  ||||||| |||  ||||||| |   ||||||||||||||| |||| ||||    
T  26312923 aatacttggaacttattaacttcaatccttatgcgatcgatact---ctacttactctttatcacttattgc 26312991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 449
Target Start/End: Complemental strand, 15826499 - 15826375
Alignment:
Q  322 tttttggatcttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcctcatggtatcgatattctactacttactctttatta 421  Q
    |||||| || |||||||||||||||||| ||||  || |||||| ||||||||||||||||| ||| | | ||||||| |   ||||||| |||||| ||    
T  15826499 tttttgaattttaaataattaaacttagtatttgaaagtacttataacttatccacgacaattctcgtaggatcgatact---ctacttagtctttaata 15826403  T
Q  422 cttgttgcgacagtttatacttgcactt 449  Q
    ||||| |||||||| |||||||||||||    
T  15826402 cttgtagcgacagtgtatacttgcactt 15826375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 31586786 - 31586824
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31586786 aaaagactctaaaaatagcgaatgactgactgtcatcaa 31586824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 9189535 - 9189572
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9189535 aaaagactctaaaaatagcgaatgactgactgtcatca 9189572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 37280559 - 37280596
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37280559 aaaagactctaaaaatagcgaatgactgactgtcatca 37280596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 43208772 - 43208809
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43208772 aaaagactctaaaaatagcgaatgactgactgtcatca 43208809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 38716085 - 38716184
Alignment:
Q  147 tatagcttccata--tcagagttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttcacttgaatctctaa 244  Q
    |||||||||||||  || ||||||||| ||| |||||| || ||||| |||| ||||| |||| ||||| ||||||| | ||||||||||||| ||||||    
T  38716085 tatagcttccataactccgagttgtagctttataaatcttgtaaacctctatgtttactaagttaattcattaaccatattttttcacttgaacctctaa 38716184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 5665876 - 5665829
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||    
T  5665876 aatatcataaaaagactctaaaaatagcgaatgattgactgtcatcaa 5665829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 16788432 - 16788389
Alignment:
Q  12 tatcataaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  16788432 tatcataaaagattctaaaaatagcaaatgactgactgtcatca 16788389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 25869872 - 25869834
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25869872 aaaagactctaaaaatagtgaatgactgactgtcatcaa 25869834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 40780695 - 40780657
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  40780695 aaaagactctaaaaatagcgaatgattgactgtcatcaa 40780657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 8887879 - 8887842
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||||||||||| |||||||||||    
T  8887879 aaaagactctaaaaatagcgaatgacggactgtcatca 8887842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 9186306 - 9186343
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  9186306 aaaagactctaaaaatagcgaatgactaactgtcatca 9186343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 25873240 - 25873203
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| |||||||||||||||||||    
T  25873240 aaaagactctaaaaatagtgaatgactgactgtcatca 25873203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 25957326 - 25957363
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||||||||||| |||||||||||    
T  25957326 aaaagactctaaaaatagcgaatgacggactgtcatca 25957363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 38014673 - 38014636
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  38014673 aaaagactctaaaaatagcaaatgactgactgtcatca 38014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 34121820 - 34121709
Alignment:
Q  132 gaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgcaaaccactatctttaccaagtcaattccttaaccacaatttttca 231  Q
    ||||||||| | | |||||||||||||  || |||||||| | |||||||| |  ||||| |||| |||||||||| | ||| |||||||| | ||||||    
T  34121820 gaagttgtatgtacctatagcttccatcacaaagttgtagctgtctaaatcttataaacctctatttttaccaagttagttctttaaccac-acttttca 34121722  T
Q  232 cttgaatctctaa 244  Q
    |||||||| ||||    
T  34121721 cttgaatcgctaa 34121709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 43722950 - 43722903
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  43722950 aatatcataaaaagactctaaaaataacgaatgattgactgtcatcaa 43722903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 10599997 - 10599951
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| || ||||||||||| |||||||||||||||||||    
T  10599997 aatatcataaaaagattctaaaaatagtgaatgactgactgtcatca 10599951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 13972767 - 13972813
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| ||||||||||||| ||||||| ||||||||||||    
T  13972767 aatatcataaaaagactctaaaaataacgaatgattgactgtcatca 13972813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 25960552 - 25960590
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  25960552 aaaagactctaaaaatagcgaatgatggactgtcatcaa 25960590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 42369583 - 42369621
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  42369583 aaaagactctagaaatagcgaatgacggactgtcatcaa 42369621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 3874519 - 3874482
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||  |||||||||||||||||||    
T  3874519 aaaagactctaaaaataatgaatgactgactgtcatca 3874482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 24237591 - 24237554
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  24237591 aaaagactctaagaatagcgaatgacggactgtcatca 24237554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 25955856 - 25955819
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||||||||||  |||||||||||    
T  25955856 aaaagactctaaaaatagcgaatgaaggactgtcatca 25955819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 30148645 - 30148608
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  30148645 aaaagactctagaaatagcgaatgacggactgtcatca 30148608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 31430601 - 31430638
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  31430601 aaaagactctaaaaatagcaaatgactaactgtcatca 31430638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 13136808 - 13136764
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcat 53  Q
    |||||||||||| ||||||||||||| | ||||||||||||||||    
T  13136808 aatatcataaaatgactctaaaaataacaaatgactgactgtcat 13136764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 624500 - 624379
Alignment:
Q  93 aagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtag-ttttctaaatcatgcaaacc 191  Q
    ||||||||| ||||||||||||| ||||||| ||||   ||||||||||||||||||| ||||||| | |||||||||| ||||||||||| ||||||||    
T  624500 aagctatgcaaagctataactctctacatttttcctcatgaagttgtacgaagctataacttccatcttagagttgtagcttttctaaatcctgcaaacc 624401  T
Q  192 actatctttaccaagtcaattc 213  Q
     |||| |||||||||| |||||    
T  624400 tctatttttaccaagttaattc 624379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 445
Target Start/End: Complemental strand, 623717 - 623576
Alignment:
Q  302 ccttgtctttgttatttgcctttttggatcttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcctcatggtatcgatatt 401  Q
    |||| |||||||| |||| | ||||| ||||||||||||||||||||||||||||| ||||| | ||| |||||||  |||||||| ||| ||| ||| |    
T  623717 ccttatctttgttgtttgtcattttgaatcttaaataattaaacttagcatttagacatactcataacgtatccactccaatcctcgtgggatccatact 623618  T
Q  402 ctactacttactctttattacttgttgcgacagtttatacttgc 445  Q
    |||  |||||||| |||||| ||||||||| | | |||||||||    
T  623617 cta--acttactcattattatttgttgcgataatatatacttgc 623576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 21828004 - 21828041
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21828004 aaaagactctaaaaatagcgaatgactgactgtcatca 21828041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 41307408 - 41307445
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41307408 aaaagactctaaaaatagcgaatgactgactgtcatca 41307445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 25329502 - 25329455
Alignment:
Q  10 aatatcataaaaga-ctctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||    
T  25329502 aatatcataaaaaaactctaaaaatagcgaatgactgactgtcatcaa 25329455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 25329509 - 25329548
Alignment:
Q  16 ataaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  25329509 ataaaaaactctaaaaatagcgaatgactgactgtcatca 25329548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 7270287 - 7270241
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||    
T  7270287 aatatcataaaaagactctaaaaatagcgaatgacagactgtcatca 7270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 28788355 - 28788401
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  28788355 aatatcataaaaagactctaaaaatagcaaatgactgactgtcatca 28788401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 14016999 - 14017036
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  14016999 aaaagactctaaaaatagcaaatgactgactgtcatca 14017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 17747654 - 17747617
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  17747654 aaaagactctaaaaatagcaaatgactgactgtcatca 17747617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 21336705 - 21336742
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| |||||||||||||||||||    
T  21336705 aaaagactctaaaaatagtgaatgactgactgtcatca 21336742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 40916852 - 40916889
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  40916852 aaaagactctaaaaatagcaaatgactgactgtcatca 40916889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 9779672 - 9779747
Alignment:
Q  324 tttggatcttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcctcatggtatcgata 399  Q
    |||||||||||||||| ||||||||  ||||| ||||  ||| |||||||||||  |||||||||| | |||||||    
T  9779672 tttggatcttaaataactaaacttaatatttaaaaatgattaaaacttatccacatcaatcctcatcggatcgata 9779747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 34831014 - 34830976
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  34831014 aaaagactctagaaatagcgaatgacggactgtcatcaa 34830976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 41877646 - 41877684
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  41877646 aaaagactctagaaatagcgaatgacggactgtcatcaa 41877684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 12087189 - 12087152
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  12087189 aaaagactctagaaatagcgaatgacggactgtcatca 12087152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 26753583 - 26753620
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  26753583 aaaagactctaaaaataacgaatgacggactgtcatca 26753620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 446
Target Start/End: Original strand, 896984 - 897098
Alignment:
Q  329 atcttaaataattaaacttagcatttagaaatacttagaacttatccacgacaatcctcatggtatcgatattctactacttactctttattacttgttg 428  Q
    ||||||||||||||||||| ||||||  |||| |||||| ||||||||||| ||||||||||  ||| ||| |    |||||||||||||||||||||||    
T  896984 atcttaaataattaaacttggcatttgaaaattcttagagcttatccacgaaaatcctcatgagatcaatact---ttacttactctttattacttgttg 897080  T
Q  429 cgacagtttatacttgca 446  Q
    ||| ||| ||||||||||    
T  897081 cgatagtgtatacttgca 897098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 9380057 - 9380012
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatc 54  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  9380057 aatatcataaaaagactctaaaaatagcgaatgactgactgtcatc 9380012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 53815017 - 53814970
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||    
T  53815017 aatatcataaaaagactctaaaaatagtgaatgactgactgtcatcaa 53814970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 538052 - 538014
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  538052 aaaagactctaaaaatagtgaatgactgactgtcatcaa 538014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 16243212 - 16243166
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||    
T  16243212 aatatcataaaaagactctaaaaatagcgaatgactgattgtcatca 16243166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 20729440 - 20729478
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  20729440 aaaaaactctaaaaatagcgaatgactgactgtcatcaa 20729478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 34984712 - 34984758
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  34984712 aatatcataaaaagactctaaaaataacgaatgactgactgtcatca 34984758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 54460413 - 54460367
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  54460413 aatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 54460367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 10884055 - 10884018
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| |||||||||||||||||||    
T  10884055 aaaagactctaaaaatagtgaatgactgactgtcatca 10884018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 23299516 - 23299553
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| |||||||||||||||||||    
T  23299516 aaaagactctaaaaatagtgaatgactgactgtcatca 23299553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 41976358 - 41976321
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||| |||||||||||||||||||||||||||||||||    
T  41976358 aaaacactctaaaaatagcgaatgactgactgtcatca 41976321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 43926161 - 43926124
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||||||||||| |||||||||||    
T  43926161 aaaagactctaaaaatagcgaatgacggactgtcatca 43926124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 449
Target Start/End: Original strand, 17775604 - 17775648
Alignment:
Q  405 ctacttactctttattacttgttgcgacagtttatacttgcactt 449  Q
    ||||||||| ||||||||||||||||||| | |||||||||||||    
T  17775604 ctacttactttttattacttgttgcgacaatgtatacttgcactt 17775648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 449
Target Start/End: Original strand, 19076905 - 19076949
Alignment:
Q  405 ctacttactctttattacttgttgcgacagtttatacttgcactt 449  Q
    ||||||||| ||||||||||||||||||| | |||||||||||||    
T  19076905 ctacttactttttattacttgttgcgacaatgtatacttgcactt 19076949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 29344737 - 29344773
Alignment:
Q  19 aaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||| |||||||||||||||||||    
T  29344737 aaagactctaaaaatagtgaatgactgactgtcatca 29344773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 31857091 - 31857055
Alignment:
Q  19 aaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||| |||||||||||||||||||    
T  31857091 aaagactctaaaaatagtgaatgactgactgtcatca 31857055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 10880822 - 10880775
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||| ||||||||||||||| ||| |||||||||||||||    
T  10880822 aatatcataaaaagactctaaaaatagcaaataactgactgtcatcaa 10880775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 6921927 - 6921889
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  6921927 aaaaggctctaaaaatagtgaatgactgactgtcatcaa 6921889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 24124823 - 24124785
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  24124823 aaaagactctacaaatagcgaatgacggactgtcatcaa 24124785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 50462418 - 50462456
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  50462418 aaaagactctaaaaatagtgaatgacggactgtcatcaa 50462456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 2280742 - 2280779
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| | |||||||||||||||||    
T  2280742 aaaagactctaaaaatagtgcatgactgactgtcatca 2280779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 2778052 - 2778015
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  2778052 aaaagactctagaaatagcgaatgacggactgtcatca 2778015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 2872890 - 2872853
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  2872890 aaaagactctcaaaatagcgaatgacggactgtcatca 2872853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 3839827 - 3839790
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  3839827 aaaaaactctaaaaatagtgaatgactgactgtcatca 3839790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 6445634 - 6445671
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  6445634 aaaagactctagaaatagcgaatgacggactgtcatca 6445671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 7485897 - 7485860
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  7485897 aaaagactctagaaatagcgaatgacggactgtcatca 7485860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 8462521 - 8462558
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  8462521 aaaagactctagaaatagcgaatgacggactgtcatca 8462558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 9157545 - 9157508
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| | |||||||||||||||||    
T  9157545 aaaagactctaaaaatagtgcatgactgactgtcatca 9157508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 24128100 - 24128063
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  24128100 aaaagactctagaaatagcgaatgacggactgtcatca 24128063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 28265029 - 28264992
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  28265029 aaaagactctagaaatagcgaatgacggactgtcatca 28264992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 42355299 - 42355336
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  42355299 aaaaaactctaaaaatagtgaatgactgactgtcatca 42355336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 45895695 - 45895658
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  45895695 aaaagactctagaaatagcgaatgacggactgtcatca 45895658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 49743788 - 49743825
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  49743788 aaaagactctaaaaataactaatgactgactgtcatca 49743825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 6517 - 6554
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6517 aaaagactctaaaaatagcgaatgactgactgtcatca 6554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 4609 - 4562
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||    
T  4609 aatatcataaaaagactctaaaaatagtgaatgactgactgtcatcaa 4562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 4834 - 4880
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  4834 aatatcataaaaagactctaaaaataacgaatgactgactgtcatca 4880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 2564 - 2601
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  2564 aaaagactctaaaaatagcgaatgactgattgtcatca 2601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 7018 - 7055
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7018 aaaagactctaaaaatagtgaatgactgactgtcatca 7055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 226502 - 226465
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  226502 aaaagactctaaaaatagcgaatgattgactgtcatca 226465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 4374 - 4421
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  4374 aatatcataaaaagactctaaaagtagcgaatgactgactgacatcaa 4421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 11504 - 11551
Alignment:
Q  10 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 56  Q
    |||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  11504 aatatcataaaaagactctaaaagtagcgaatgactgactgacatcaa 11551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 1014 - 1060
Alignment:
Q  10 aatatcataaaag-actctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||||  ||||||||| |||||||||||||||||||||||    
T  1014 aatatcataaaaatactctaaaagtagcgaatgactgactgtcatca 1060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 88994 - 88960
Alignment:
Q  26 ctaaaaatagcgaatgactgactgtcatcaagtgc 60  Q
    ||||||||| |||||||||||||||||||||||||    
T  88994 ctaaaaataacgaatgactgactgtcatcaagtgc 88960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 4675 - 4712
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  4675 aaaagactctaaaaatagcgaatgacggactatcatca 4712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 18636 - 18599
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  18636 aaaagactctagaaatagcgaatgacggactgtcatca 18599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 30335 - 30298
Alignment:
Q  18 aaaagactctaaaaatagcgaatgactgactgtcatca 55  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  30335 aaaagactctcaaaatagcgaatgacggactgtcatca 30298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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