View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17089_low_4 (Length: 271)
Name: NF17089_low_4
Description: NF17089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17089_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 4 - 271
Target Start/End: Complemental strand, 3714715 - 3714448
Alignment:
| Q |
4 |
actcttcgaactcttttacctgtgttattcttcatgcatgcatatcnnnnnnnatgttcattttgacttcatattgaacaatataagattttgattttat |
103 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3714715 |
actctttgaactcttttacctgtgttattcttcatgcatgcatatcttttttgatgttcattttgactgcatattgaacaatataagattttgattttat |
3714616 |
T |
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| Q |
104 |
tcatgaaagttctcctaccgtctattgtgggaaccgagtcagtgtatggtgaaataaataatatattagtccttaatatactaccaagtactaacttttt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
3714615 |
tcatgaaagttctcctaccgtctattgtgggaaccgagtcagtgtatggtgaaataaataatatatcagtccttaatataccaccaagtactaacttttt |
3714516 |
T |
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| Q |
204 |
ctggtgcattacttatattgatatatatttggtaaaagctaataagttttcttaaagtgtcagtatat |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3714515 |
ctggtgcattacttatattgatatatatttggtaaaagctaataagttttcttaaagtgtcagtatat |
3714448 |
T |
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