View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17089_low_6 (Length: 240)
Name: NF17089_low_6
Description: NF17089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17089_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 28022982 - 28022775
Alignment:
| Q |
20 |
atttcaacattgagacgatgaagggtgaaagtatcaaggggaatgccccaatatcgtgaaactttgtcgcacaggtcactcaccttatcggtctccttca |
119 |
Q |
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| T |
28022982 |
atttcaacattgagacgatgaagggtgaaagtatcaaggggaatgccccaataccgtgaaactttgttgcacaggtcactcaccttatcggtctccttca |
28022883 |
T |
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| Q |
120 |
ccctcacatagccattgctgccatggccaagaaacttcactaaaacatgtagtttcaggtctgatggcagtggatcaacaatgagagtaactgtttctgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28022882 |
ccctcacatagccattgctgccatggccaagaaacttcactaaaacatgtagtttcaggtctgatggcagcggatcaacaatgagagtaactgtttctgt |
28022783 |
T |
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| Q |
220 |
ttcatctc |
227 |
Q |
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|||||||| |
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| T |
28022782 |
ttcatctc |
28022775 |
T |
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