View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17089_low_8 (Length: 234)
Name: NF17089_low_8
Description: NF17089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17089_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 44544869 - 44544655
Alignment:
| Q |
1 |
caagtggatcaattgttttttcatgacccagatggatttatgattgaaatatgcaattgtgatagtctcccagttattcctctagctggtgagattgtta |
100 |
Q |
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| T |
44544869 |
caagtggatcaattgttttttcatgacccagatggatttatgattgaaatatgcaattgtgatagtctcccagttattcctctagctggtgagattgtta |
44544770 |
T |
|
| Q |
101 |
attcatgctctagaatcaaccttgaggctatgccacaaaagatacaccaacctgtagaaaaaatttaaacatgatgaggccaaacttcttattttatctt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44544769 |
attcatgctctagaatcaaccttgagactatgccacaaaagatacaccaacctgtagaaaaaatttaaacatgatgaggccaaacttcttattttatctt |
44544670 |
T |
|
| Q |
201 |
aattttgtggtgatg |
215 |
Q |
| |
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||||||||||||||| |
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| T |
44544669 |
aattttgtggtgatg |
44544655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 44555511 - 44555300
Alignment:
| Q |
1 |
caagtggatcaattgttttttcatgacccagatggatttatgattgaaatatgcaattgtgatagtctcccagttattcctctagctggtgagattgtta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| || |||| |
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| T |
44555511 |
caagtggatcaattgttttttcatgacccagatggatttatgattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggtta |
44555412 |
T |
|
| Q |
101 |
attcatgctctagaatcaaccttgaggctatgccacaaaagatacaccaacctgtagaaaaaatttaaacatgatgaggccaaacttcttattttatctt |
200 |
Q |
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|||||||||||| ||||||||||| |||||||||| ||||||||||| |||| | |||||| | |||||||||||||| |||||||||||||||| |
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| T |
44555411 |
gatcatgctctagactcaaccttgagattatgccacaacagatacaccaagttgtaaagcaaatttgatcatgatgaggccaagcttcttattttatctt |
44555312 |
T |
|
| Q |
201 |
aattttgtggtg |
212 |
Q |
| |
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|||||||||||| |
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| T |
44555311 |
aattttgtggtg |
44555300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 375995 - 376047
Alignment:
| Q |
7 |
gatcaattgttttttcatgacccagatggatttatgattgaaatatgcaattg |
59 |
Q |
| |
|
||||||||||| |||||||| |||||||||| |||||||||||| |||||||| |
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|
| T |
375995 |
gatcaattgttctttcatgatccagatggatatatgattgaaatgtgcaattg |
376047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 51845978 - 51846193
Alignment:
| Q |
1 |
caagtggatcaattgttttttcatgacccagatggatttatgattgaaatatgcaattgtgatagtctcccagttattcctctagctggtgagattgtta |
100 |
Q |
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|
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| ||||||||| ||| |||| |
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| T |
51845978 |
caagtggatcagttgttttttcatgacccagatggattcatgattgagatatgcaattgtgatagtctccctgttattcctttagctggtgggatggtta |
51846077 |
T |
|
| Q |
101 |
attcatgctctagaatcaaccttgaggctatgccacaaaagatacaccaacctgtagaaaaaatttaaacat----gatgaggccaaacttcttatttta |
196 |
Q |
| |
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| |||| ||||| ||||| ||||| ||||||||||| ||||| ||||| || | | |||||| | ||| ||||||||||| |||||||||||| |
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| T |
51846078 |
cattatgccctagactcaactttgagtctatgccacaacagatagaccaagttgcaaagcaaatttgatcatgctcgatgaggccaagcttcttatttta |
51846177 |
T |
|
| Q |
197 |
tcttaattttgtggtg |
212 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
51846178 |
tcttaattttgtggtg |
51846193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 2573272 - 2573324
Alignment:
| Q |
16 |
ttttttcatgacccagatggatttatgattgaaatatgcaattgtgatagtct |
68 |
Q |
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||||| |||||||||||||| || |||||||| |||||||||||||||||||| |
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|
| T |
2573272 |
tttttccatgacccagatggtttcatgattgagatatgcaattgtgatagtct |
2573324 |
T |
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