View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1708_high_1 (Length: 759)
Name: NF1708_high_1
Description: NF1708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1708_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 16 - 741
Target Start/End: Original strand, 4205233 - 4205959
Alignment:
| Q |
16 |
ataattctggtgtgggagctaacaagtaaacaaaatcacctttattgtcgaatactttagagccaaaaggctttccaatccaatcagaatgtttaaaagc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4205233 |
ataattctggtgtgggagctaacaagtaaacaaaatcacccttattgttgaatactttagagccaaaaggctttccaatccaatcagaatgtttaaaagc |
4205332 |
T |
|
| Q |
116 |
acctaaagagttctgaaagactgaaccctcagacactgttacagctttcatattgccatgttttacgtaaacaataacaagattgccgtcatgaatcttt |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4205333 |
acctaaagagttctgaaagactgaaccctcagacactgttacagctttcatattgccatgttttacgtaaacaataacaagattgccgtcatgaatcttt |
4205432 |
T |
|
| Q |
216 |
cggttgagtgctattgttttttcaggattactagtcaataacatcttgaaaggcttcaaatttttcaacctagtgaaaaagaaaaaccatatgtcatcca |
315 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4205433 |
cggttgaatgctattgttttttcaggattactagtcaataacatcttgaaaggcttcaaatttttcaacctagtgaaaaagaaaaaccatatgtcatcca |
4205532 |
T |
|
| Q |
316 |
caagccaattac--atgtgattatgtgtgagtatatatagggtatgtttcgataaacaacttaatttaaggcttgtaagataagtgattatcacataagt |
413 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||| |
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| T |
4205533 |
caagccaattacatatgtgattatgtgtgagtatatatagggtatgtttcgataaacaacttaatttaaggcttgtaaggtaagtcattatcatataagt |
4205632 |
T |
|
| Q |
414 |
gcttgtctatacatcatttctatataataagataaaatgatttcacaagtaaacaaaacattattggaaaaaataattgaatggatgaaggtgaaaccaa |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4205633 |
gcttgtctatacatcatttctatataataagataaaatgaattcacaagtaaacaaaacattattggaaaaaataattgaatggatgaaggggaaaccaa |
4205732 |
T |
|
| Q |
514 |
ccaatatagatttgaatttgaaccaacaaatttggattgacctaaacaccagtannnnnnntttagaaactcactctgtgtttcatgaaccaataaacaa |
613 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
4205733 |
ccaatatagatttgaatttgaaccaacaaatttggattgacctaaacaccagta-ggggggtttagaaactcactctgtgtttcatgaaccaacaaacaa |
4205831 |
T |
|
| Q |
614 |
cagcattgacctaaacaccagtagccgttcaatttggattaattttttagtattataattgaaattgatatctcatatataaatgctaattaatttgcan |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4205832 |
cagcattgacctaaacaccagtagccgttcaatttggattaattttttagtattataattgaaattgatatctcatatataaatgctaattaattttcat |
4205931 |
T |
|
| Q |
714 |
nnnnnngaaaaattatagggactgaatt |
741 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
4205932 |
ttttttgaaaaattatagggactgaatt |
4205959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 17241898 - 17241813
Alignment:
| Q |
33 |
gctaacaagtaaacaaaatcacctttattgtcgaatactttagagccaaaaggctttccaatccaatcagaatgtttaaaagcacc |
118 |
Q |
| |
|
||||| |||||||||||| | || |||||| |||||||||||| ||||| | |||||| |||||||| |||||||||||| |||| |
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|
| T |
17241898 |
gctaataagtaaacaaaaccgcccttattgctgaatactttagacccaaatgactttcctatccaatctgaatgtttaaaaacacc |
17241813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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