View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1708_low_3 (Length: 293)

Name: NF1708_low_3
Description: NF1708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1708_low_3
NF1708_low_3
[»] chr3 (12 HSPs)
chr3 (41-202)||(50296044-50296205)
chr3 (199-293)||(50295924-50296018)
chr3 (21-152)||(42531100-42531228)
chr3 (36-129)||(22821044-22821136)
chr3 (199-293)||(46691818-46691913)
chr3 (222-293)||(42531016-42531087)
chr3 (84-194)||(46691666-46691784)
chr3 (34-126)||(2593272-2593363)
chr3 (21-103)||(16462826-16462905)
chr3 (38-105)||(34338082-34338149)
chr3 (13-49)||(50297370-50297406)
chr3 (52-101)||(46573941-46573990)
[»] chr2 (8 HSPs)
chr2 (13-186)||(8986703-8986873)
chr2 (40-293)||(1172950-1173207)
chr2 (199-293)||(8986568-8986661)
chr2 (20-202)||(32290919-32291093)
chr2 (38-160)||(38583677-38583799)
chr2 (199-293)||(9048016-9048110)
chr2 (38-130)||(20593595-20593684)
chr2 (36-129)||(42633121-42633213)
[»] chr4 (6 HSPs)
chr4 (13-185)||(16871428-16871597)
chr4 (199-292)||(16871293-16871385)
chr4 (13-129)||(54148109-54148221)
chr4 (223-293)||(54147929-54148003)
chr4 (13-130)||(24225885-24225998)
chr4 (59-125)||(7259055-7259120)
[»] chr7 (15 HSPs)
chr7 (16-186)||(46963232-46963399)
chr7 (20-190)||(15614422-15614585)
chr7 (199-293)||(46963441-46963534)
chr7 (38-160)||(44338852-44338974)
chr7 (20-156)||(11828087-11828224)
chr7 (13-158)||(17921364-17921505)
chr7 (36-160)||(3902045-3902168)
chr7 (14-160)||(3889553-3889695)
chr7 (222-292)||(15614591-15614661)
chr7 (13-87)||(26403377-26403448)
chr7 (36-126)||(3890037-3890126)
chr7 (36-124)||(24486661-24486747)
chr7 (21-103)||(21814286-21814365)
chr7 (257-292)||(21814018-21814053)
chr7 (98-160)||(3889296-3889357)
[»] chr1 (9 HSPs)
chr1 (49-194)||(15629549-15629694)
chr1 (13-160)||(2075225-2075370)
chr1 (199-293)||(15629728-15629822)
chr1 (13-160)||(2071695-2071840)
chr1 (39-126)||(3774504-3774591)
chr1 (20-119)||(10354204-10354299)
chr1 (22-160)||(11993432-11993565)
chr1 (194-251)||(9168095-9168152)
chr1 (79-128)||(370586-370634)
[»] chr5 (6 HSPs)
chr5 (20-194)||(24137369-24137536)
chr5 (44-128)||(11320614-11320698)
chr5 (199-293)||(24137235-24137335)
chr5 (21-156)||(9512268-9512396)
chr5 (36-127)||(27315086-27315178)
chr5 (262-293)||(9512085-9512116)
[»] chr6 (11 HSPs)
chr6 (36-160)||(28063184-28063308)
chr6 (13-160)||(21862367-21862511)
chr6 (13-187)||(9290805-9290976)
chr6 (200-293)||(9291018-9291111)
chr6 (13-144)||(33424145-33424272)
chr6 (38-107)||(18984353-18984422)
chr6 (41-129)||(13098076-13098163)
chr6 (36-105)||(2131735-2131804)
chr6 (50-107)||(3900645-3900702)
chr6 (223-293)||(28063417-28063491)
chr6 (37-80)||(10741661-10741704)
[»] scaffold0007 (2 HSPs)
scaffold0007 (13-194)||(14418-14592)
scaffold0007 (199-252)||(14626-14679)
[»] chr8 (4 HSPs)
chr8 (38-160)||(20242529-20242651)
chr8 (38-193)||(20250509-20250660)
chr8 (36-129)||(5616763-5616855)
chr8 (57-127)||(16578989-16579057)
[»] scaffold0499 (1 HSPs)
scaffold0499 (41-129)||(7045-7132)
[»] scaffold0018 (1 HSPs)
scaffold0018 (48-106)||(31956-32014)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 50296205 - 50296044
Alignment:
Q  41 tataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagctggcagcaaaac 140  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || || ||||||    
T  50296205 tataaagttctaacattacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccataaaaataaaccaaattagttgtcaccaaaac 50296106  T
Q  141 caatagagagcagcaaccaaccaaacttaggtatcttcgtagagagagcagcaaaaatcatc 202  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  50296105 caatagagagtagcaaccaaccaaacttagttatcttcgtagagagagcagcaaaaaccatc 50296044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 199 - 293
Target Start/End: Complemental strand, 50296018 - 50295924
Alignment:
Q  199 catccaaacaatagaaccagtatagagaagcagccatacataagaaccaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaatc 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50296018 catccaaacaatagaaccagtatagagaagcagccatacataagaaccaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaatc 50295924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 42531228 - 42531100
Alignment:
Q  21 aaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaacc 120  Q
    |||||||||||||||| ||   |||||||||||||||| ||||||| | ||||||||||||||||||  || |||| | ||||| |||||||||||||||    
T  42531228 aaaaacatactaaatagta---taaagttctaacactaaccctcaaactgaagcttactaagctttaaactagttatagattaatccagaaaaataaacc 42531132  T
Q  121 aaatcagctggcagcaaaaccaatagagagca 152  Q
    ||||||| || ||||||||||||| |||||||    
T  42531131 aaatcaggtgtcagcaaaaccaatggagagca 42531100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 22821044 - 22821136
Alignment:
Q  36 aataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagct 129  Q
    |||||||||||||||||||||||||||| ||||  |||| ||||||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  22821044 aataatataaagttctaacactacccctaaagctaaagcctactaagctttaaacttgttacaaattaaccca-aaaaataaaccaaatcagct 22821136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 46691818 - 46691913
Alignment:
Q  199 catccaaacaatagaaccagtatagagaag--cagccatacataagaaccaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaatc 293  Q
    ||||||||||||||||||| || |||||||  ||  |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46691818 catccaaacaatagaaccaatagagagaaggtcatacata-ataagaaccaatagaggagtaaccaaagaatcatcaaaagtgggagaagtgcaatc 46691913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 222 - 293
Target Start/End: Complemental strand, 42531087 - 42531016
Alignment:
Q  222 agagaagcagccatacataagaaccaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaatc 293  Q
    |||||||||| ||||||||| |||||||| | |||||||||||||||||| |||||||||||||||||||||    
T  42531087 agagaagcagtcatacataaaaaccaatataggagtaaccaaagaatcattaaaagtgggagaagtgcaatc 42531016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 46691666 - 46691784
Alignment:
Q  84 tttaggcttgttacaaattaacccagaaaaataaaccaaatcagct--------ggcagcaaaaccaatagagagcagcaaccaaccaaacttaggtatc 175  Q
    |||| ||||||||||||||| | ||||||||||||| |||||||||        | ||||||||||||| ||||||| |||||| ||||| | || ||||    
T  46691666 tttaagcttgttacaaattatctcagaaaaataaactaaatcagctaatcagctgtcagcaaaaccaatggagagcaacaaccagccaaagtgagttatc 46691765  T
Q  176 ttcgtagagagagcagcaa 194  Q
    || ||||||||||||||||    
T  46691766 tttgtagagagagcagcaa 46691784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 2593272 - 2593363
Alignment:
Q  34 ataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatca 126  Q
    |||||||||||||||||||||| ||||| |||||   |||||||||||||||   |||||||| ||||||||| | ||||||||| |||||||    
T  2593272 ataataatataaagttctaacaataccc-tcaagtaaaagcttactaagcttctagcttgttaaaaattaacctaaaaaaataaaacaaatca 2593363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 16462905 - 16462826
Alignment:
Q  21 aaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaatta 103  Q
    |||||||||||||||||||   |||||||||||||||||||||||||  ||  ||||| |||||||| | |||||||| ||||    
T  16462905 aaaaacatactaaataata---taaagttctaacactacccctcaagttgagtcttaccaagctttatgtttgttacatatta 16462826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 34338149 - 34338082
Alignment:
Q  38 taatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaac 105  Q
    ||||||||| || |||  |||||||||||||  |||||||||||||||||  ||||||||||||||||    
T  34338149 taatataaacttttaaagctacccctcaagctaaagcttactaagctttaaacttgttacaaattaac 34338082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 50297406 - 50297370
Alignment:
Q  13 aaaatacaaaaaacatactaaataataatataaagtt 49  Q
    ||||||| |||||||||||||||||||||||||||||    
T  50297406 aaaatacgaaaaacatactaaataataatataaagtt 50297370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 46573990 - 46573941
Alignment:
Q  52 aacactacccctcaagccgaagcttactaagctttaggcttgttacaaat 101  Q
    |||||| ||||||||||  ||||||| ||||||||| |||||||||||||    
T  46573990 aacactccccctcaagcttaagcttaataagctttatgcttgttacaaat 46573941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 8986873 - 8986703
Alignment:
Q  13 aaaatacaaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaa 112  Q
    ||||||| |||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||    
T  8986873 aaaatacgaaaaacatactaaataata---taaagttctaacactacccctcaagctgaagcttactaagctttaagcttgttacaaattaaccaagaaa 8986777  T
Q  113 aataaaccaaatcagctggcagcaaaaccaatagagagcagcaaccaaccaaacttaggtatcttcgtagagag 186  Q
    |||||||||||||||||| ||||||| ||||| |||||||||||| |||||||||||| |||||| ||||||||    
T  8986776 aataaaccaaatcagctgtcagcaaacccaatggagagcagcaacaaaccaaacttagttatctttgtagagag 8986703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 40 - 293
Target Start/End: Original strand, 1172950 - 1173207
Alignment:
Q  40 atataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagctggcagcaaaa 139  Q
    |||||||||||||| |||||| ||||||| |||||||||  ||||||| | ||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  1172950 atataaagttctaatactacctctcaagctgaagcttacggagctttaagtttgttacaaattaacccagaaaaatcaaccaaatcagctgttagcaaaa 1173049  T
Q  140 ccaatagagagcagcaaccaaccaaacttaggtatcttcgtagagagagcagcaa--------aaatcatccaaacaatagaaccagtatagagaagcag 231  Q
    ||||| ||||||||||| |||    | | || |||||||||||||||||||||||        |||||||| | |||| |||||  ||| ||||||||||    
T  1173050 ccaatggagagcagcaatcaa----agtgagttatcttcgtagagagagcagcaagaacaatcaaatcatcaagacaaaagaacaggtagagagaagcag 1173145  T
Q  232 ccatacataagaaccaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaatc 293  Q
     |||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  1173146 tcatacaaaagaaccaatagaggagcaaccaaagaatcatcaaaagtggaagaagtgcaatc 1173207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 199 - 293
Target Start/End: Complemental strand, 8986661 - 8986568
Alignment:
Q  199 catccaaacaatagaaccagtatagagaagcagccatacataagaaccaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaatc 293  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  8986661 catccaaacaatagaaccagtagagagaagcagccatacataagaaccaatagaggag-aaccaaagaatcatcaaaagtgggagaagtgcaatc 8986568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 32291093 - 32290919
Alignment:
Q  20 aaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaac 119  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| ||||||||||||    
T  32291093 aaaaaacatactaaataata---taaagatctaacactacccctcaagctgaagcttactaagctttaagcttgttaccaattaacctagaaaaataaac 32290997  T
Q  120 caaatcagctggcagcaaaaccaatagagagcagcaaccaaccaaacttaggtatcttcgtagagagagcagcaaaaatcatc 202  Q
      |||||||||  ||| |||||| | ||||||||    |||| ||| | || ||| ||||||||||||||||||| |||||||    
T  32290996 tgaatcagctgttagc-aaaccattggagagcag----caactaaagtgagttattttcgtagagagagcagcaagaatcatc 32290919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 38 - 160
Target Start/End: Original strand, 38583677 - 38583799
Alignment:
Q  38 taatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaa-cccagaaaaataaaccaaatcagctggcagca 136  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| || | |||||||||||||||||||||| || |    
T  38583677 taatataaagttctaacactacccctcaagctgaagcttactaagcttta-acttgttacaaattaatccaaaaaaaataaaccaaatcagctggtagaa 38583775  T
Q  137 aaaccaatagagagcagcaaccaa 160  Q
     |||||||  ||||||||||||||    
T  38583776 gaaccaattaagagcagcaaccaa 38583799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 9048016 - 9048110
Alignment:
Q  199 catccaaacaatagaaccagtatagagaagcagccatacataagaaccaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaatc 293  Q
    |||||||||||||||| ||||| ||| ||| || ||||||||||||  |||||| ||||||||||| ||||||||||||| | |||| |||||||    
T  9048016 catccaaacaatagaatcagtagagaaaaggagtcatacataagaattaatagaggagtaaccaaaaaatcatcaaaagtagtagaactgcaatc 9048110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 20593595 - 20593684
Alignment:
Q  38 taatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagctg 130  Q
    |||||| ||||||||| ||||||||| |||  |||| |||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||    
T  20593595 taatatgaagttctaa-actacccctaaagttgaagtttactaag-tttaagcttgttacaaattaatcca-aaaaataaaccaaatcagctg 20593684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 42633121 - 42633213
Alignment:
Q  36 aataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagct 129  Q
    ||||||||||| || ||||||||| |||||||   ||||||||||| ||||  | || ||| |||||||||| | ||||||||| |||||||||    
T  42633121 aataatataaacttttaacactacacctcaagttaaagcttactaaacttttagtttattataaattaaccctg-aaaataaactaaatcagct 42633213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 16871597 - 16871428
Alignment:
Q  13 aaaatacaaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaa 112  Q
    ||||||| |||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||| |||||    
T  16871597 aaaatacgaaaaacatactaaataata---taaagttctaacactacccctcaagctgaagcttactaagctttaaacttgttacaaattaaccaagaaa 16871501  T
Q  113 aataaaccaaatcagctggcagcaaaaccaatagagagcagcaaccaaccaaacttaggtatcttcgtagaga 185  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| |||||| |||||||    
T  16871500 aataaaccaaatcagctgtcagcaaaaccaatggagagcagcaacaaaccaaacttagttatctttgtagaga 16871428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 199 - 292
Target Start/End: Complemental strand, 16871385 - 16871293
Alignment:
Q  199 catccaaacaatagaaccagtatagagaagcagccatacataagaaccaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaat 292  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  16871385 catccaaacaatagaaccagtagagagaagcagccatacataagaaccaatagaggag-aaccaaagaatcatcaaaagtgggagaagtgcaat 16871293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 54148221 - 54148109
Alignment:
Q  13 aaaatacaaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaa 112  Q
    ||||||| ||||||||| |||||||||   |||| || |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||  |||    
T  54148221 aaaatacgaaaaacatagtaaataata---taaacttttaacactacccctcaagctgaagcttactaagctttaagcttgttacaaattaaccc-caaa 54148126  T
Q  113 aataaaccaaatcagct 129  Q
    |||||||||||| ||||    
T  54148125 aataaaccaaattagct 54148109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 54148003 - 54147929
Alignment:
Q  223 gagaagcagccatacataagaaccaataga-agagtaac---caaagaatcatcaaaagtgggagaagtgcaatc 293  Q
    |||||||| ||||||| |||||||||| || |||| |||   |||||||||||||||||||||||||||||||||    
T  54148003 gagaagcaaccatacagaagaaccaatcgagagagaaacaaccaaagaatcatcaaaagtgggagaagtgcaatc 54147929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 24225998 - 24225885
Alignment:
Q  13 aaaatacaaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaa 112  Q
    ||||||| ||||| |||||||||||||   |||| ||| |||||||||||| |||   |||||||||||| || | |||  |||||||||||||  | ||    
T  24225998 aaaatacgaaaaatatactaaataata---taaacttcgaacactacccctgaagttaaagcttactaagtttgaagctcattacaaattaacctcg-aa 24225903  T
Q  113 aataaaccaaatcagctg 130  Q
    ||||||||||||||||||    
T  24225902 aataaaccaaatcagctg 24225885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 7259055 - 7259120
Alignment:
Q  59 cccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatc 125  Q
    |||||||||| ||| ||||||||| |||| |||||||||||||||| |||| |||||||| ||||||    
T  7259055 cccctcaagctgaaacttactaagttttaagcttgttacaaattaa-ccaggaaaataaatcaaatc 7259120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 46963232 - 46963399
Alignment:
Q  16 atacaaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaat 115  Q
    |||| ||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||    
T  46963232 atacgaaaaacatactaaata---atataaagttctaacactacccctcaagctgaagcttactaagctttaaacttgttacaaattaaccaagaaaaat 46963328  T
Q  116 aaaccaaatcagctggcagcaaaaccaatagagagcagcaaccaaccaaacttaggtatcttcgtagagag 186  Q
    ||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| |||||| ||||||||    
T  46963329 aaaccaaatcagctgtcagcaaaaccaatggagagcagcaacaaaccaaacttagttatctttgtagagag 46963399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 15614422 - 15614585
Alignment:
Q  20 aaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaac 119  Q
    ||||||||||||||||||||   ||||||||| |||||||||||| ||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||    
T  15614422 aaaaaacatactaaataata---taaagttcttacactacccctcgagctgaagcttactaagttttaagcttgttaaaaattaacccagaaaaataaac 15614518  T
Q  120 caaatcagctggcagcaaaaccaatagagagcagcaaccaaccaaacttaggtatcttcgtagagagagca 190  Q
    |||||| | ||  |||||||||||| ||||||| |||||||    | | || |||||||||||||||||||    
T  15614519 caaatctgttgttagcaaaaccaatggagagcatcaaccaa----agtgagttatcttcgtagagagagca 15614585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 46963441 - 46963534
Alignment:
Q  199 catccaaacaatagaaccagtatagagaagcagccatacataagaaccaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaatc 293  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  46963441 catccaaacaatagaaccagtagagagaagcagccatacataagaaccaatagaggag-aaccaaagaatcatcaaaagtgggagaagtgcaatc 46963534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 44338974 - 44338852
Alignment:
Q  38 taatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagctggcagcaa 137  Q
    ||||||||||||| ||||| ||||||||||  || ||||||||||||||| || | ||||||||||| | |||||||||||||||||||||||  ||||     
T  44338974 taatataaagttcaaacaccacccctcaagttgaggcttactaagctttaagcctattacaaattaatctagaaaaataaaccaaatcagctgttagcag 44338875  T
Q  138 aaccaatagagagcagcaaccaa 160  Q
    |||||||  ||||||||||||||    
T  44338874 aaccaatgaagagcagcaaccaa 44338852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 11828087 - 11828224
Alignment:
Q  20 aaaaaacatactaaataataatataaagttctaacac--tacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataa 117  Q
    ||||||||||||||||| |||||| ||||||||||||  |||||||||||  |||| ||||||||| ||| |||||||||||||||||| ||||||||||    
T  11828087 aaaaaacatactaaata-taatatgaagttctaacacattacccctcaagttgaagattactaagccttaagcttgttacaaattaacctagaaaaataa 11828185  T
Q  118 accaaatcagctggcagcaaaaccaatagagagcagcaa 156  Q
    || ||||||  ||  |||  ||||||| |||||||||||    
T  11828186 actaaatcatttgatagcggaaccaatggagagcagcaa 11828224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 17921364 - 17921505
Alignment:
Q  13 aaaatacaaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaa 112  Q
    ||||||| ||||||||||||||||||    |||| ||  |||| ||||||||||||  ||||||||||||||||| ||||||||||||||||||||| ||    
T  17921364 aaaatacgaaaaacatactaaataatt---taaaatttgaacagtacccctcaagctaaagcttactaagctttaagcttgttacaaattaacccag-aa 17921459  T
Q  113 aataaaccaaatcagctggcagcaaaaccaatagagagcagcaacc 158  Q
    |||||| ||||| |||||  | || |||||| ||||||||||||||    
T  17921460 aataaaacaaattagctgataacagaaccaacagagagcagcaacc 17921505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 36 - 160
Target Start/End: Complemental strand, 3902168 - 3902045
Alignment:
Q  36 aataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagctggcagc 135  Q
    |||||||||||||||||||||| ||| | ||||  |||||| ||||||||||  ||||||||||||||||| | |||||||||||| ||||||||  | |    
T  3902168 aataatataaagttctaacacttccctttaagctaaagcttgctaagctttaaacttgttacaaattaaccga-aaaaataaaccagatcagctgatatc 3902070  T
Q  136 aaaaccaatagagagcagcaaccaa 160  Q
    |||||||||  ||||||||||||||    
T  3902069 aaaaccaatgaagagcagcaaccaa 3902045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 3889695 - 3889553
Alignment:
Q  14 aaatacaaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaa 113  Q
    ||||||||||| |||| ||   |||||||||||||||||||||| ||| | ||||  ||| || ||||||||||  ||| ||||||||||||||| ||||    
T  3889695 aaatacaaaaatcatatta---aataatataaagttctaacacttccctttaagctaaagtttgctaagctttaaacttattacaaattaaccca-aaaa 3889600  T
Q  114 ataaaccaaatcagctggcagcaaaaccaatagagagcagcaaccaa 160  Q
    ||||||||||||| | |  | ||||||||||  ||||||||||||||    
T  3889599 ataaaccaaatcaaccgatatcaaaaccaatgaagagcagcaaccaa 3889553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 15614591 - 15614661
Alignment:
Q  222 agagaagcagccatacataagaaccaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaat 292  Q
    |||||||||| |||||||||||||||||||| | |||||||||||||||||| |||||||| |||| ||||    
T  15614591 agagaagcagtcatacataagaaccaatagaggcgtaaccaaagaatcatcacaagtgggaaaagtacaat 15614661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 26403448 - 26403377
Alignment:
Q  13 aaaatacaaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagcttta 87  Q
    ||||||| |||||||||||||||||||   ||||||||||||||||||||||||||  ||| |||||||||||||    
T  26403448 aaaatacgaaaaacatactaaataata---taaagttctaacactacccctcaagctaaagtttactaagcttta 26403377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 3890126 - 3890037
Alignment:
Q  36 aataatataaagttctaaca-ctacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatca 126  Q
    |||||||||||||||||||| |||| | | ||||  |||||||||||||||||  |||||||||||||||||   |||||||||||||||||    
T  3890126 aataatataaagttctaacaactacactttaagctaaagcttactaagctttaaacttgttacaaattaacc--aaaaaataaaccaaatca 3890037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 24486661 - 24486747
Alignment:
Q  36 aataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaat 124  Q
    ||||||||||| |||||||||||||| | |||   ||||||||||||||||| | |||||||||||||  ||  |||||||||||||||    
T  24486661 aataatataaacttctaacactacccttgaagttaaagcttactaagctttaagtttgttacaaattactcc--aaaaataaaccaaat 24486747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 21814365 - 21814286
Alignment:
Q  21 aaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaatta 103  Q
    |||||||||||||||||||   |||||||||||||||||||||||||  ||  ||||| |||||||| | |||||||| ||||    
T  21814365 aaaaacatactaaataata---taaagttctaacactacccctcaagttgagtcttaccaagctttatgtttgttacatatta 21814286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 21814053 - 21814018
Alignment:
Q  257 taaccaaagaatcatcaaaagtgggagaagtgcaat 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  21814053 taaccaaagaatcatcaaaagtgggagaagtgcaat 21814018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 3889357 - 3889296
Alignment:
Q  98 aaattaacccagaaaaataaaccaaatcagctggcagcaaaaccaatagagagcagcaaccaa 160  Q
    ||||||||||| |||||||||||||||||||||  | ||||||||||  |||| |||||||||    
T  3889357 aaattaaccca-aaaaataaaccaaatcagctgataccaaaaccaatgaagagtagcaaccaa 3889296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 15629549 - 15629694
Alignment:
Q  49 tctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagctggcagcaaaaccaatagag 148  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| || ||||||||||||| |||    
T  15629549 tctaacactacccctcaagctgaagcttactaagctttaagcttgttacaaattaactcagaaaaataaactaaatcagttgtcagcaaaaccaatggag 15629648  T
Q  149 agcagcaaccaaccaaacttaggtatcttcgtagagagagcagcaa 194  Q
    | ||||||||||||||| | || |||||||| ||||||||||||||    
T  15629649 aacagcaaccaaccaaagtgagttatcttcgcagagagagcagcaa 15629694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 2075225 - 2075370
Alignment:
Q  13 aaaatacaaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagc-tttaggcttgttacaaattaacccagaa 111  Q
    ||||||| |||||||||||||||||||   |||| || ||||||||||||||||||  ||||||||||||| |||| |||||||||||||||| ||| ||    
T  2075225 aaaatacgaaaaacatactaaataata---taaacttgtaacactacccctcaagctaaagcttactaagcgtttaagcttgttacaaattaaaccataa 2075321  T
Q  112 aaataaaccaaatcagctggcagcaaaaccaatagagagcagcaaccaa 160  Q
    |||||||| ||||||| ||  |||| ||| ||||||||||| |||||||    
T  2075322 aaataaactaaatcagttgatagcataacaaatagagagcaacaaccaa 2075370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 199 - 293
Target Start/End: Original strand, 15629728 - 15629822
Alignment:
Q  199 catccaaacaatagaaccagtatagagaagcagccatacataagaaccaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaatc 293  Q
    |||||||| ||||||||||||| ||||| ||| ||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  15629728 catccaaaaaatagaaccagtagagagatgcaaccatacataagaaccaatagaggagtaaccaaaaaatcatcaaaagttggagaagtgcaatc 15629822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 2071695 - 2071840
Alignment:
Q  13 aaaatacaaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagc-tttaggcttgttacaaattaacccagaa 111  Q
    ||||||| |||||||||||||||||||   |||| || ||||||||||||||||||  ||||||||||||| |||| |||||||||||||||| ||| ||    
T  2071695 aaaatacgaaaaacatactaaataata---taaacttgtaacactacccctcaagctaaagcttactaagcgtttaagcttgttacaaattaaaccataa 2071791  T
Q  112 aaataaaccaaatcagctggcagcaaaaccaatagagagcagcaaccaa 160  Q
    |||||||| ||||||| ||  |||| ||| ||| ||||||| |||||||    
T  2071792 aaataaactaaatcagttgatagcataacaaatggagagcaacaaccaa 2071840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 3774504 - 3774591
Alignment:
Q  39 aatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatca 126  Q
    |||||||| |||||||| |||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  3774504 aatataaacttctaacattacccctcaagttaaagcttactaagctttatgcttgttacaaattaacccagaaaaataaaccatatca 3774591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 10354299 - 10354204
Alignment:
Q  20 aaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaac 119  Q
    ||||||||||||||||||||   ||||||||||||||||| | ||||||  ||||||||||||||||| | |||||| ||||||||||| ||||||||||    
T  10354299 aaaaaacatactaaataata---taaagttctaacactactcttcaagctaaagcttactaagctttaagtttgttagaaattaaccca-aaaaataaac 10354204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 11993565 - 11993432
Alignment:
Q  22 aaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaacca 121  Q
    ||||||||||||||   |||||||| ||||||||||||||||||||   ||||||| |||| |||| |||||||| ||||||||  || |||||||||||    
T  11993565 aaaacatactaaat---aatataaacttctaacactacccctcaagttaaagcttattaagatttaagcttgtta-aaattaacaaag-aaaataaacca 11993471  T
Q  122 aatcagctggcagcaaaaccaatagagagcagcaaccaa 160  Q
    |||||||||  |||| |||||||  |||||| |||||||    
T  11993470 aatcagctgatagcataaccaatgaagagcatcaaccaa 11993432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 9168095 - 9168152
Alignment:
Q  194 aaaatcatccaaacaatagaaccagtatagagaagcagccatacataagaaccaatag 251  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||||||| ||||||    
T  9168095 aaaatcatccaaacaaaagaaccagtagagagaagtagccatacataagaatcaatag 9168152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 370634 - 370586
Alignment:
Q  79 taagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagc 128  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  370634 taagctttaagcttgttgcaaattaaccc-gaaaaataaaccaaatcagc 370586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 24137536 - 24137369
Alignment:
Q  20 aaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaac 119  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24137536 aaaaaacatactaaataata---taaagttctaacactacccctcaagctaaagcttactaagctttaagcttgttacaaattaacccagaaaaataaac 24137440  T
Q  120 caaatcagctggcagcaaaaccaatagagagcagcaaccaaccaaacttaggtatcttcgtagagagagcagcaa 194  Q
    |||||||||||  |||| |||||||  ||||||||||||||    | | || ||||||| |||||||||||||||    
T  24137439 caaatcagctgctagcagaaccaatgaagagcagcaaccaa----aatgagttatcttcatagagagagcagcaa 24137369  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 11320614 - 11320698
Alignment:
Q  44 aaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagc 128  Q
    |||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||    
T  11320614 aaagttctaacactacccatcaagctgaagcttactaagctttaagcttgttacaaattaacccaaaaaaataaatcaaatcagc 11320698  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 199 - 293
Target Start/End: Complemental strand, 24137335 - 24137235
Alignment:
Q  199 catccaaacaatagaaccagtatagagaagcagccatacataaga------accaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaat 292  Q
    ||||||||||||||||||| || |||||||||| |||||||||||      |||||||||  |||| |||||||||||||||||||||||||||||||||    
T  24137335 catccaaacaatagaaccattagagagaagcagtcatacataagatccagaaccaatagagtagtatccaaagaatcatcaaaagtgggagaagtgcaat 24137236  T
Q  293 c 293  Q
    |    
T  24137235 c 24137235  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 9512396 - 9512268
Alignment:
Q  21 aaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaacc 120  Q
    |||||||||||||||||||   |||||||||||||| |||| |||||| || ||||| | |   ||| ||||||||||||||||||| | ||||||||||    
T  9512396 aaaaacatactaaataata---taaagttctaacacaacccatcaagctgatgcttaatta---ttaagcttgttacaaattaaccccg-aaaataaacc 9512304  T
Q  121 aaatcagctggcagcaaaaccaatagagagcagcaa 156  Q
    |||| |||| | |||| |||||||  ||||||||||    
T  9512303 aaattagctcgtagcataaccaatgaagagcagcaa 9512268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 27315178 - 27315086
Alignment:
Q  36 aataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaa-ttaacccagaaaaataaaccaaatcag 127  Q
    |||||||| ||||| |||||||||||||||||   |||||||||||| |||| |||||||||||| ||| || | |||||||||| |||||||    
T  27315178 aataatatgaagttttaacactacccctcaaggtaaagcttactaagttttaagcttgttacaaatttatccaaaaaaaataaactaaatcag 27315086  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 262 - 293
Target Start/End: Complemental strand, 9512116 - 9512085
Alignment:
Q  262 aaagaatcatcaaaagtgggagaagtgcaatc 293  Q
    ||||||||||||||||||||||||||||||||    
T  9512116 aaagaatcatcaaaagtgggagaagtgcaatc 9512085  T

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Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 28063184 - 28063308
Alignment:
Q  36 aataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagctggcagc 135  Q
    |||||||||||||||||||||| |||||||||  |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||    
T  28063184 aataatataaagttctaacacttcccctcaagatgaagtttactaagctttaagcttgttacaaattaacccagaaaaataaaccaaatcagctgatagc 28063283  T
Q  136 aaaaccaatagagagcagcaaccaa 160  Q
    | |||||||||||||||||||||||    
T  28063284 ataaccaatagagagcagcaaccaa 28063308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 21862511 - 21862367
Alignment:
Q  13 aaaatacaaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaa 112  Q
    ||||||| |||||||||||||||||||   ||||||||||||||| |||||||||| ||||| |||||| ||||| |||||||||||||||||| |||||    
T  21862511 aaaatacgaaaaacatactaaataata---taaagttctaacacttcccctcaagctgaagcatactaaactttaagcttgttacaaattaacctagaaa 21862415  T
Q  113 aataaaccaaatcagctggcagcaaaaccaatagagagcagcaaccaa 160  Q
     |||||||||||||||||  |||||||||||| ||||| ||| |||||    
T  21862414 tataaaccaaatcagctgttagcaaaaccaatggagagtagcgaccaa 21862367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 9290805 - 9290976
Alignment:
Q  13 aaaatacaaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaa 112  Q
    ||||||| |||| |||||||||||   |||||||||||||||| ||| ||| |||| |||| |||| |||||||| |||||||||||||||||| | |||    
T  9290805 aaaatacgaaaagcatactaaata---atataaagttctaacattactcctgaagctgaagtttaccaagctttaagcttgttacaaattaacctaaaaa 9290901  T
Q  113 aataaaccaaatcagctggcagcaaaaccaatagagagcagcaaccaaccaaacttaggtatcttcgtagagaga 187  Q
    |||||||||||||| ||  ||||||||||||| ||||| |||||||||||||| | || ||| ||||||||||||    
T  9290902 aataaaccaaatcaactatcagcaaaaccaatggagagaagcaaccaaccaaagtgagttatgttcgtagagaga 9290976  T

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Target: chr6; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 9291018 - 9291111
Alignment:
Q  200 atccaaacaatagaaccagtatagagaagcagccatacataagaaccaatagaagagtaaccaaagaatcatcaaaagtgggagaagtgcaatc 293  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  9291018 atccaaataatagaaccagtatagagaagcaaccatacataacaaccaatagagaagtaaccaaagaatcatcaaaagtgggagaagtgcaatc 9291111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 33424145 - 33424272
Alignment:
Q  13 aaaatacaaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaa 112  Q
    ||||||| ||||||||||||||||   ||||||||||||||||||||||||||||  |||||||||||||||||| | |||||||||||||| |||| ||    
T  33424145 aaaatacgaaaaacatactaaata---atataaagttctaacactacccctcaagttgaagcttactaagctttaagtttgttacaaattaatccag-aa 33424240  T
Q  113 aataaaccaaatcagctggcagcaaaaccaat 144  Q
    |||||||||||| |||| | |||| |||||||    
T  33424241 aataaaccaaattagctcgtagcacaaccaat 33424272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 18984422 - 18984353
Alignment:
Q  38 taatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaaccc 107  Q
    ||||||||| ||||||||| |||||||||||  |||||||||||| |||| |||||||||||||||||||    
T  18984422 taatataaaattctaacaccacccctcaagctaaagcttactaaggtttaagcttgttacaaattaaccc 18984353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 13098163 - 13098076
Alignment:
Q  41 tataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagct 129  Q
    |||||| |||||||||||||||| ||||  | |||||||||| |||| ||| ||||||||||||||| | |||||||||||||||||||    
T  13098163 tataaacttctaacactaccccttaagctaaggcttactaaggtttaagctcgttacaaattaaccctg-aaaataaaccaaatcagct 13098076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 2131735 - 2131804
Alignment:
Q  36 aataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaac 105  Q
    ||||||||||| | |||| | ||||| |||||  |||||||||||||||||| |||||||||||||||||    
T  2131735 aataatataaactcctaatattacccttcaagttgaagcttactaagctttaagcttgttacaaattaac 2131804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 3900702 - 3900645
Alignment:
Q  50 ctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaaccc 107  Q
    ||||||||||||||||| || |||||||||||||||||  |||||| | |||||||||    
T  3900702 ctaacactacccctcaatccaaagcttactaagctttaaacttgttgcgaattaaccc 3900645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 293
Target Start/End: Original strand, 28063417 - 28063491
Alignment:
Q  223 gagaagcagccatacataagaaccaataga-agagtaac---caaagaatcatcaaaagtgggagaagtgcaatc 293  Q
    |||||||| ||||||| |||||||||| || |||| |||   ||||||||||||||||||||||||| |||||||    
T  28063417 gagaagcaaccatacaaaagaaccaattgatagagaaacaaccaaagaatcatcaaaagtgggagaaatgcaatc 28063491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 10741704 - 10741661
Alignment:
Q  37 ataatataaagttctaacactacccctcaagccgaagcttacta 80  Q
    |||||||||||||||||| ||||||||||||| |||||| ||||    
T  10741704 ataatataaagttctaacgctacccctcaagctgaagctcacta 10741661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 14418 - 14592
Alignment:
Q  13 aaaatacaaaaaacatactaaataataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaa 112  Q
    ||||||| ||||||||||||| |||||   |||| ||||||||| ||| ||||||| |||||||||||||||||| |||||||||||||| ||| || ||    
T  14418 aaaatacgaaaaacatactaattaata---taaaattctaacaccacctctcaagctgaagcttactaagctttaagcttgttacaaattgaccgaggaa 14514  T
Q  113 aataaaccaaatcagctggcagcaaaaccaatagagagcagcaaccaaccaaacttaggtatcttcgtagagagagcagcaa 194  Q
    |||||| |||||||||||  |  | |||||||| ||||||||||||||    | | || || ||||||||||||||||||||    
T  14515 aataaatcaaatcagctgttaaaagaaccaataaagagcagcaaccaa----agtgagctaccttcgtagagagagcagcaa 14592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 14626 - 14679
Alignment:
Q  199 catccaaacaatagaaccagtatagagaagcagccatacataagaaccaataga 252  Q
    ||||||||||| |||||| ||| ||| ||  |||||||||||||||||||||||    
T  14626 catccaaacaaaagaaccggtagagataactagccatacataagaaccaataga 14679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 20242651 - 20242529
Alignment:
Q  38 taatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagctggcagcaa 137  Q
    ||||||||||||| ||||| ||||||||||  || ||||||||||||||| || | ||||||||||| | |||||||||||||||||||||||  ||||     
T  20242651 taatataaagttcaaacaccacccctcaagttgaggcttactaagctttaagcctattacaaattaatctagaaaaataaaccaaatcagctgttagcag 20242552  T
Q  138 aaccaatagagagcagcaaccaa 160  Q
    |||||||  ||||||||||||||    
T  20242551 aaccaatgaagagcagcaaccaa 20242529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 20250509 - 20250660
Alignment:
Q  38 taatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagctggcagcaa 137  Q
    ||||||||||||| ||||| ||||||||||  || ||||||||||||||| || | ||||||||||| | |||||||||||||||||||||||  ||||     
T  20250509 taatataaagttcaaacaccacccctcaagttgaggcttactaagctttaagcctattacaaattaatctagaaaaataaaccaaatcagctgttagcag 20250608  T
Q  138 aaccaatagagagcagcaaccaaccaaacttaggtatcttcgtagagagagcagca 193  Q
    |||||||  ||||||||||||||    | | || |||||| |||||||||||||||    
T  20250609 aaccaatgaagagcagcaaccaa----agtgagttatctttgtagagagagcagca 20250660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 5616855 - 5616763
Alignment:
Q  36 aataatataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagct 129  Q
    |||||||||||||||||||||||||||| ||||  |||| ||||||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  5616855 aataatataaagttctaacactacccctaaagctaaagcctactaagctttaaacttgttacaaattaaccca-aaaaataaaccaaatcagct 5616763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 16578989 - 16579057
Alignment:
Q  57 tacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcag 127  Q
    |||||||||||   ||||||| |||||||||  |||||||||||||||||   ||||||||||||||||||    
T  16578989 tacccctcaagttaaagcttaataagctttaaacttgttacaaattaacc--taaaaataaaccaaatcag 16579057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 7045 - 7132
Alignment:
Q  41 tataaagttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacccagaaaaataaaccaaatcagct 129  Q
    |||||| |||||||||||||||| ||||  |||||||||||| |||| ||| ||||||||||||||  | |||||||||||||||||||    
T  7045 tataaacttctaacactaccccttaagctaaagcttactaaggtttaagctcgttacaaattaaccttg-aaaataaaccaaatcagct 7132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 32014 - 31956
Alignment:
Q  48 ttctaacactacccctcaagccgaagcttactaagctttaggcttgttacaaattaacc 106  Q
    |||||||||| ||||||| ||  ||||||||||||||||| ||||||||||||| ||||    
T  32014 ttctaacactccccctcaggctaaagcttactaagctttaagcttgttacaaataaacc 31956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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