View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1708_low_6 (Length: 236)

Name: NF1708_low_6
Description: NF1708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1708_low_6
NF1708_low_6
[»] chr6 (12 HSPs)
chr6 (155-221)||(1875048-1875114)
chr6 (1-58)||(1875216-1875273)
chr6 (175-216)||(34170089-34170130)
chr6 (169-212)||(12383681-12383724)
chr6 (169-216)||(15517178-15517225)
chr6 (169-216)||(34379823-34379870)
chr6 (171-216)||(29419875-29419920)
chr6 (178-219)||(34792470-34792511)
chr6 (169-221)||(12104828-12104880)
chr6 (173-209)||(12480081-12480117)
chr6 (185-221)||(31759938-31759974)
chr6 (169-221)||(32124207-32124259)
[»] chr4 (25 HSPs)
chr4 (169-216)||(39533844-39533891)
chr4 (169-204)||(483984-484019)
chr4 (169-216)||(2865056-2865103)
chr4 (175-221)||(19936506-19936552)
chr4 (175-212)||(36786161-36786198)
chr4 (169-216)||(4406246-4406293)
chr4 (170-217)||(9993531-9993578)
chr4 (169-216)||(34616220-34616267)
chr4 (169-216)||(39160902-39160949)
chr4 (169-212)||(40575931-40575974)
chr4 (169-216)||(46518508-46518555)
chr4 (170-216)||(12672533-12672579)
chr4 (170-204)||(21142096-21142130)
chr4 (175-221)||(22586788-22586834)
chr4 (177-219)||(29922639-29922681)
chr4 (171-216)||(2253961-2254006)
chr4 (171-216)||(2582815-2582860)
chr4 (171-216)||(8311325-8311370)
chr4 (171-212)||(12672454-12672495)
chr4 (171-216)||(12912616-12912661)
chr4 (170-207)||(38707044-38707081)
chr4 (175-220)||(38716392-38716437)
chr4 (169-205)||(484033-484069)
chr4 (177-221)||(40814752-40814796)
chr4 (175-215)||(48603679-48603719)
[»] chr3 (17 HSPs)
chr3 (169-216)||(27224585-27224632)
chr3 (175-215)||(8150021-8150061)
chr3 (170-219)||(9492682-9492731)
chr3 (171-216)||(34327596-34327641)
chr3 (173-216)||(3447609-3447652)
chr3 (169-216)||(29241568-29241615)
chr3 (169-216)||(48191720-48191767)
chr3 (169-204)||(52461503-52461538)
chr3 (169-216)||(54595795-54595842)
chr3 (170-216)||(10841785-10841831)
chr3 (169-219)||(35511856-35511906)
chr3 (169-219)||(37897767-37897817)
chr3 (175-208)||(24694324-24694357)
chr3 (175-216)||(40639883-40639924)
chr3 (175-204)||(42929106-42929135)
chr3 (171-203)||(41254032-41254064)
chr3 (179-219)||(52606007-52606047)
[»] chr2 (17 HSPs)
chr2 (171-210)||(33555271-33555310)
chr2 (169-204)||(5529247-5529282)
chr2 (169-216)||(32630494-32630541)
chr2 (175-212)||(44868523-44868560)
chr2 (171-219)||(6166108-6166156)
chr2 (171-211)||(36001788-36001828)
chr2 (169-216)||(1961397-1961444)
chr2 (169-216)||(23143574-23143621)
chr2 (169-216)||(23555364-23555411)
chr2 (169-212)||(27331851-27331894)
chr2 (169-216)||(31024176-31024223)
chr2 (169-216)||(38181765-38181812)
chr2 (169-216)||(38465794-38465841)
chr2 (170-212)||(32630412-32630454)
chr2 (169-210)||(15119871-15119912)
chr2 (167-212)||(15859643-15859688)
chr2 (169-221)||(44274547-44274599)
[»] chr8 (15 HSPs)
chr8 (170-216)||(44098998-44099044)
chr8 (169-216)||(7484705-7484752)
chr8 (175-216)||(6189722-6189763)
chr8 (169-221)||(28882747-28882799)
chr8 (169-216)||(1897863-1897910)
chr8 (169-216)||(10934691-10934738)
chr8 (169-216)||(13964424-13964471)
chr8 (169-204)||(25267980-25268015)
chr8 (175-221)||(3385486-3385532)
chr8 (171-221)||(6441530-6441580)
chr8 (175-208)||(24017814-24017847)
chr8 (170-203)||(27503002-27503035)
chr8 (169-210)||(27518409-27518450)
chr8 (169-221)||(6614690-6614742)
chr8 (173-221)||(39099628-39099676)
[»] scaffold0019 (1 HSPs)
scaffold0019 (173-221)||(42772-42820)
[»] scaffold0113 (1 HSPs)
scaffold0113 (169-216)||(40458-40505)
[»] scaffold0065 (2 HSPs)
scaffold0065 (173-216)||(36942-36985)
scaffold0065 (172-216)||(39197-39241)
[»] chr5 (14 HSPs)
chr5 (169-212)||(15549417-15549460)
chr5 (177-219)||(694291-694333)
chr5 (170-216)||(7505184-7505230)
chr5 (170-216)||(18652853-18652899)
chr5 (175-216)||(4082826-4082867)
chr5 (169-204)||(26045319-26045354)
chr5 (169-219)||(10437722-10437772)
chr5 (171-221)||(38084210-38084260)
chr5 (175-216)||(3100416-3100457)
chr5 (171-216)||(8717725-8717770)
chr5 (171-216)||(13710378-13710423)
chr5 (169-210)||(18033449-18033490)
chr5 (169-218)||(28518723-28518772)
chr5 (171-216)||(33868013-33868058)
[»] chr1 (13 HSPs)
chr1 (169-219)||(50308633-50308683)
chr1 (175-216)||(6156645-6156686)
chr1 (175-219)||(14885330-14885374)
chr1 (175-219)||(14885488-14885532)
chr1 (169-216)||(24981929-24981976)
chr1 (171-221)||(6735781-6735831)
chr1 (178-216)||(50878354-50878392)
chr1 (175-216)||(14967313-14967354)
chr1 (171-216)||(29043461-29043506)
chr1 (171-216)||(40610968-40611013)
chr1 (175-216)||(50550207-50550248)
chr1 (175-220)||(52131959-52132004)
chr1 (170-210)||(38595643-38595683)
[»] scaffold0009 (1 HSPs)
scaffold0009 (169-216)||(145973-146020)
[»] chr7 (10 HSPs)
chr7 (169-216)||(2943217-2943264)
chr7 (169-216)||(8127915-8127962)
chr7 (169-216)||(25245231-25245278)
chr7 (169-216)||(38940225-38940272)
chr7 (170-216)||(23818430-23818476)
chr7 (169-219)||(31115694-31115744)
chr7 (175-216)||(27330517-27330558)
chr7 (173-221)||(21096196-21096244)
chr7 (171-215)||(24911615-24911659)
chr7 (175-219)||(28321575-28321619)
[»] scaffold0036 (1 HSPs)
scaffold0036 (171-204)||(89605-89638)
[»] scaffold0470 (1 HSPs)
scaffold0470 (169-221)||(3976-4028)


Alignment Details
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 1875114 - 1875048
Alignment:
Q  155 cctttgcacattcaggtcattattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  1875114 cctttgcacattccggtcattattacaaacaaaaatcaacattttagatttattcaataaatgatat 1875048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1875273 - 1875216
Alignment:
Q  1 ttaaatttaaattcaaattctaataaacagttaggtcatacaaacttgtgccttttaa 58  Q
    ||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  1875273 ttaaatttaaattcagattctaataaacagttaggtcatgcaaatttgtgccttttaa 1875216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 34170089 - 34170130
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||||||||||||||||||| ||||| |||||    
T  34170089 tattataaacaaaaatcaacattttagattcattcattaaat 34170130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 12383724 - 12383681
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaat 212  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||    
T  12383724 ggtcactattataaacaaaaatctacattttagattaattcaat 12383681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 15517225 - 15517178
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||| |||||||||| |||||||||| ||||| |||||    
T  15517225 ggtcattattataagcaaaaatcaatattttagattcattcattaaat 15517178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 34379870 - 34379823
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| |||||    
T  34379870 ggtcactattataagcaaaaatcaacattttagattcattcattaaat 34379823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 29419920 - 29419875
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||||||||||  |||||||||||||||||||| ||||| |||||    
T  29419920 tcattattataagtaaaaatcaacattttagattcattcattaaat 29419875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 34792470 - 34792511
Alignment:
Q  178 tataaacaaaaatcaacattttagatttattcaataaattat 219  Q
    |||||||||||||||| |||||||||| ||||| ||||||||    
T  34792470 tataaacaaaaatcaatattttagattcattcattaaattat 34792511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 12104880 - 12104828
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    ||||| |||||||| ||||||| ||||||||||||||||| | ||||| ||||    
T  12104880 ggtcagtattataagcaaaaattaacattttagatttatttattaaatcatat 12104828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 12480081 - 12480117
Alignment:
Q  173 attattataaacaaaaatcaacattttagatttattc 209  Q
    ||||||||||  |||||||||||||||||||||||||    
T  12480081 attattataagtaaaaatcaacattttagatttattc 12480117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 31759938 - 31759974
Alignment:
Q  185 aaaaatcaacattttagatttattcaataaattatat 221  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  31759938 aaaaatcaacattttagatttattcaattaatgatat 31759974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 32124259 - 32124207
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    |||||||||||||| |||||||  || ||||||||| ||||||||||| ||||    
T  32124259 ggtcattattataagcaaaaattgactttttagattcattcaataaataatat 32124207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 39533891 - 39533844
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||    
T  39533891 ggtcattattataagcaaaaatcaacattttagatttattcattaaat 39533844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 483984 - 484019
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatt 204  Q
    ||||||||||||||||||||||||||||||||||||    
T  483984 ggtcattattataaacaaaaatcaacattttagatt 484019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 2865103 - 2865056
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||||||||||| ||||||||||||| ||||| |||||    
T  2865103 ggtcattattataaacaaaaattaacattttagattaattcattaaat 2865056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 19936506 - 19936552
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  19936506 tattataaacaaaaatcaactttttagattcattgaataaattatat 19936552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 36786161 - 36786198
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaat 212  Q
    |||||||||||||||||||||||||||||| |||||||    
T  36786161 tattataaacaaaaatcaacattttagattcattcaat 36786198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 4406246 - 4406293
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| ||||||||  |||||||||||||||||||||||||| |||||    
T  4406246 ggtcactattataagtaaaaatcaacattttagatttattcattaaat 4406293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 9993578 - 9993531
Alignment:
Q  170 gtcattattataaacaaaaatcaacattttagatttattcaataaatt 217  Q
    |||| ||||||||||||||||  || ||||||||||||||||||||||    
T  9993578 gtcactattataaacaaaaattcactttttagatttattcaataaatt 9993531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 34616220 - 34616267
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| ||||||||||||||||| |||||||||||| ||||| |||||    
T  34616220 ggtcactattataaacaaaaatctacattttagattcattcattaaat 34616267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 39160949 - 39160902
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| ||||||||||||||||| |||||||||||| ||||| |||||    
T  39160949 ggtcactattataaacaaaaatctacattttagattcattcattaaat 39160902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 40575974 - 40575931
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaat 212  Q
    ||||||||||||||| || ||| |||||||||||||||||||||    
T  40575974 ggtcattattataaataataattaacattttagatttattcaat 40575931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 46518555 - 46518508
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||| ||||||| ||| |||||| ||||||||||||||    
T  46518555 ggtcattattataagcaaaaattaactttttaggtttattcaataaat 46518508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 12672579 - 12672533
Alignment:
Q  170 gtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||| ||||||||| ||||||||| |||||||||||||||| |||||    
T  12672579 gtcactattataaagaaaaatcaatattttagatttattcattaaat 12672533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 21142096 - 21142130
Alignment:
Q  170 gtcattattataaacaaaaatcaacattttagatt 204  Q
    |||| ||||||||||||||||||||||||||||||    
T  21142096 gtcactattataaacaaaaatcaacattttagatt 21142130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 22586834 - 22586788
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    |||||||||||||||| || |||||||||||| ||||||||| ||||    
T  22586834 tattataaacaaaaattaatattttagatttagtcaataaataatat 22586788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 29922639 - 29922681
Alignment:
Q  177 ttataaacaaaaatcaacattttagatttattcaataaattat 219  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||    
T  29922639 ttatacacaaaaatcaatattttagatttattcattaaattat 29922681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 2253961 - 2254006
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||||||||| ||  ||||||||||||||| |||||    
T  2253961 tcattattataaacaaaaattaattttttagatttattcattaaat 2254006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 2582815 - 2582860
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||| |||||||||| |||||||||| ||||| |||||    
T  2582815 tcattattataagcaaaaatcaatattttagattgattcattaaat 2582860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 8311370 - 8311325
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||||||    
T  8311370 tcattattataagcaaaaatcaactttttaaattcattcaataaat 8311325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 12672454 - 12672495
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaat 212  Q
    ||||||||||||||||||||  |||||||||||| |||||||    
T  12672454 tcattattataaacaaaaatttacattttagattcattcaat 12672495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 12912616 - 12912661
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||||||||||  |||||| ||||||||||||||||||| |||||    
T  12912616 tcattattataagtaaaaattaacattttagatttattcattaaat 12912661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 38707044 - 38707081
Alignment:
Q  170 gtcattattataaacaaaaatcaacattttagatttat 207  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  38707044 gtcattattataaataaaaatccacattttagatttat 38707081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 38716437 - 38716392
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaattata 220  Q
    ||||||||||||||||  |||||||||||| ||||||| |||||||    
T  38716437 tattataaacaaaaatttacattttagattcattcaattaattata 38716392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 484069 - 484033
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagattt 205  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  484069 ggtcactattataagcaaaaatcaacattttagattt 484033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 40814796 - 40814752
Alignment:
Q  177 ttataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    |||||||||||||| ||||||||||||| ||||| ||||| ||||    
T  40814796 ttataaacaaaaattaacattttagattcattcattaaatgatat 40814752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 48603719 - 48603679
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaa 215  Q
    |||| ||||||||||||||||||||||||| ||||| ||||    
T  48603719 tattgtaaacaaaaatcaacattttagattcattcattaaa 48603679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 27224585 - 27224632
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||    
T  27224585 ggtcactattataaacaaaaatcaacattttagatttattcattaaat 27224632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 8150061 - 8150021
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaa 215  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  8150061 tattataaacaaaaatcaacattttaaatttattcaataaa 8150021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 9492682 - 9492731
Alignment:
Q  170 gtcattattataaacaaaaatcaacattttagatttattcaataaattat 219  Q
    |||||||||||||||||||||  |||||||||||||||| ||| ||||||    
T  9492682 gtcattattataaacaaaaatttacattttagatttatttaattaattat 9492731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 34327641 - 34327596
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||||    
T  34327641 tcattattataaacaaaaattaacattttagattcattcattaaat 34327596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 3447652 - 3447609
Alignment:
Q  173 attattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||||||||| |||| | |||||||||||||||||||||||||    
T  3447652 attattataaataaaatttaacattttagatttattcaataaat 3447609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 29241615 - 29241568
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||| | ||||||||| ||||||||| |||||||||||    
T  29241615 ggtcattattataagccaaaatcaactttttagattcattcaataaat 29241568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 48191720 - 48191767
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||||||||||| ||||||||||||| ||||| |||||    
T  48191720 ggtcactattataaacaaaaattaacattttagattcattcattaaat 48191767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 52461503 - 52461538
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatt 204  Q
    ||||||||||||||| ||||||||||||||||||||    
T  52461503 ggtcattattataaataaaaatcaacattttagatt 52461538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 54595795 - 54595842
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| |||||    
T  54595795 ggtcactattataagcaaaaatcaacattttagattcattcattaaat 54595842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 10841831 - 10841785
Alignment:
Q  170 gtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||||||||||| |||||||| ||||||| |||||||| |||||||    
T  10841831 gtcattattataagcaaaaatctacatttttgatttatttaataaat 10841785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 35511906 - 35511856
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaattat 219  Q
    ||||||||||||||  |||||||||||||||||||| ||||| | ||||||    
T  35511906 ggtcattattataagtaaaaatcaacattttagattcattcattgaattat 35511856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 37897817 - 37897767
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaattat 219  Q
    ||||| |||||||| ||||||||||||||||| ||| ||||| ||||||||    
T  37897817 ggtcactattataagcaaaaatcaacattttaaattcattcattaaattat 37897767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 24694357 - 24694324
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttatt 208  Q
    ||||||||||||||||||||||||| ||||||||    
T  24694357 tattataaacaaaaatcaacatttttgatttatt 24694324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 40639924 - 40639883
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||| ||||||||||||||||| ||||||||| |||||    
T  40639924 tattataagcaaaaatcaacattttaaatttattcattaaat 40639883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 42929135 - 42929106
Alignment:
Q  175 tattataaacaaaaatcaacattttagatt 204  Q
    ||||||||||||||||||||||||||||||    
T  42929135 tattataaacaaaaatcaacattttagatt 42929106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 41254064 - 41254032
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagat 203  Q
    |||||||||||| ||||||||||||||||||||    
T  41254064 tcattattataagcaaaaatcaacattttagat 41254032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 52606047 - 52606007
Alignment:
Q  179 ataaacaaaaatcaacattttagatttattcaataaattat 219  Q
    |||||||||| |  |||||||||||||||||||||||||||    
T  52606047 ataaacaaaacttgacattttagatttattcaataaattat 52606007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 33555310 - 33555271
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattca 210  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33555310 tcattattataaacaaaaatcaacattttagatttattca 33555271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 5529282 - 5529247
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatt 204  Q
    ||||||||||||||||||||||||||||||||||||    
T  5529282 ggtcattattataaacaaaaatcaacattttagatt 5529247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 32630541 - 32630494
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  32630541 ggtcactattataaataaaaatcaacattttagatttattcattaaat 32630494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 44868523 - 44868560
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaat 212  Q
    |||||||||||||||||||||||||| |||||||||||    
T  44868523 tattataaacaaaaatcaacattttaaatttattcaat 44868560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 6166156 - 6166108
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaattat 219  Q
    ||||| ||||||||||||||| |||||||| ||| ||||||||||||||    
T  6166156 tcattgttataaacaaaaatctacattttaaattcattcaataaattat 6166108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 36001788 - 36001828
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaa 211  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  36001788 tcattattataaacaaaaattaacattttagattcattcaa 36001828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 1961444 - 1961397
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| |||||    
T  1961444 ggtcactattataagcaaaaatcaacattttagattcattcattaaat 1961397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 23143621 - 23143574
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||| ||||||||||| |||||| ||||||||||||||    
T  23143621 ggtcactattataagcaaaaatcaactttttaggtttattcaataaat 23143574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 23555411 - 23555364
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||| ||||||||||| |||||| ||||||||||||||    
T  23555411 ggtcactattataagcaaaaatcaactttttaggtttattcaataaat 23555364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 27331894 - 27331851
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaat 212  Q
    ||||| |||||||| ||||||||||||||||||||| |||||||    
T  27331894 ggtcactattataagcaaaaatcaacattttagattcattcaat 27331851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 31024176 - 31024223
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| |||||    
T  31024176 ggtcactattataagcaaaaatcaacattttagattcattcattaaat 31024223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 38181765 - 38181812
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||| |||||||||| |||||||||| ||||| |||||    
T  38181765 ggtcattattataagcaaaaatcaatattttagattcattcattaaat 38181812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 38465794 - 38465841
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| |||||    
T  38465794 ggtcactattataagcaaaaatcaacattttagattaattcattaaat 38465841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 32630412 - 32630454
Alignment:
Q  170 gtcattattataaacaaaaatcaacattttagatttattcaat 212  Q
    |||||||||||||||||||||| ||||||| |||| |||||||    
T  32630412 gtcattattataaacaaaaatctacattttggattcattcaat 32630454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 15119912 - 15119871
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattca 210  Q
    ||||| |||||||| |||||||| ||||||||||||||||||    
T  15119912 ggtcactattataagcaaaaatctacattttagatttattca 15119871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 15859688 - 15859643
Alignment:
Q  167 caggtcattattataaacaaaaatcaacattttagatttattcaat 212  Q
    |||||||||||||||| |||||||| | |||||||||| |||||||    
T  15859688 caggtcattattataagcaaaaatctatattttagattcattcaat 15859643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 44274547 - 44274599
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    ||||| |||||||||||||| |  |||||||||||| ||||||||||| ||||    
T  44274547 ggtcactattataaacaaaagttgacattttagattcattcaataaatgatat 44274599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 44098998 - 44099044
Alignment:
Q  170 gtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||    
T  44098998 gtcattattataaacaaaaatcaacattttaaattcattcaataaat 44099044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 7484752 - 7484705
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||| ||||||||||||||||||||| ||||| |||||    
T  7484752 ggtcattattataagcaaaaatcaacattttagattcattcattaaat 7484705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 6189763 - 6189722
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  6189763 tattataaacaaaaatcaacgttttagattcattcaataaat 6189722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 28882799 - 28882747
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    ||||| |||||||| ||||||||||| |||||| |||||||||||||| ||||    
T  28882799 ggtcactattataagcaaaaatcaaccttttaggtttattcaataaatgatat 28882747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 1897863 - 1897910
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||| |||||||||| |||||| ||||||||| |||||    
T  1897863 ggtcattattataagcaaaaatcaatattttatatttattcattaaat 1897910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 10934738 - 10934691
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| |||||    
T  10934738 ggtcactattataagcaaaaatcaacattttagattcattcattaaat 10934691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 13964424 - 13964471
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||| ||||||||||||||||| ||| |||||||||||    
T  13964424 ggtcactattataagcaaaaatcaacattttaaattcattcaataaat 13964471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 25267980 - 25268015
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatt 204  Q
    ||||||||||||||||||||||| ||||||||||||    
T  25267980 ggtcattattataaacaaaaatctacattttagatt 25268015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 3385486 - 3385532
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    |||||||| ||||||||||||||||| ||||||||| ||||| ||||    
T  3385486 tattataagcaaaaatcaacattttaaatttattcattaaatgatat 3385532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 6441530 - 6441580
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    ||||| ||||||||||||||||  |||||||||||||||| ||||| ||||    
T  6441530 tcattgttataaacaaaaatcactattttagatttattcattaaatcatat 6441580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 24017847 - 24017814
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttatt 208  Q
    |||||||| |||||||||||||||||||||||||    
T  24017847 tattataagcaaaaatcaacattttagatttatt 24017814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 27503035 - 27503002
Alignment:
Q  170 gtcattattataaacaaaaatcaacattttagat 203  Q
    ||||||||||||| ||||||||||||||||||||    
T  27503035 gtcattattataagcaaaaatcaacattttagat 27503002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 27518450 - 27518409
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattca 210  Q
    ||||| ||||||||||||||||| |||||||||||| |||||    
T  27518450 ggtcactattataaacaaaaatctacattttagattcattca 27518409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 6614690 - 6614742
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    ||||| ||||||||| |||||||||||||||| ||| ||| | ||||||||||    
T  6614690 ggtcactattataaataaaaatcaacattttacattcatttactaaattatat 6614742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 39099676 - 39099628
Alignment:
Q  173 attattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    |||||||||| ||||||||||||||||| ||| | ||||||||| ||||    
T  39099676 attattataagcaaaaatcaacattttaaattcagtcaataaataatat 39099628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 42772 - 42820
Alignment:
Q  173 attattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    |||||||||| ||||||||||| ||||||||||||||||||||| ||||    
T  42772 attattataatcaaaaatcaactttttagatttattcaataaatgatat 42820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 40458 - 40505
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  40458 ggtcactattataaataaaaatcaacattttagatttattcattaaat 40505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 36985 - 36942
Alignment:
Q  173 attattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  36985 attattataaacaaaaatcaacattttagattcattcattaaat 36942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 39241 - 39197
Alignment:
Q  172 cattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||||||||| |||||||||| |||||||||| ||||| |||||    
T  39241 cattattataagcaaaaatcaaaattttagattcattcattaaat 39197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 15549460 - 15549417
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaat 212  Q
    ||||| |||||||||||||||||||||||||||||| |||||||    
T  15549460 ggtcactattataaacaaaaatcaacattttagattcattcaat 15549417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 694333 - 694291
Alignment:
Q  177 ttataaacaaaaatcaacattttagatttattcaataaattat 219  Q
    ||||||||||||||||||||||||| |||||| ||||||||||    
T  694333 ttataaacaaaaatcaacattttaggtttatttaataaattat 694291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 7505230 - 7505184
Alignment:
Q  170 gtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||||||||||||||||||| |||| ||||| |||||    
T  7505230 gtcattattataaacaaaaatcaacattttggattcattcattaaat 7505184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 18652899 - 18652853
Alignment:
Q  170 gtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||| |||||||||||||||||||||||||||||| ||||| |||||    
T  18652899 gtcactattataaacaaaaatcaacattttagattcattcattaaat 18652853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 4082867 - 4082826
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  4082867 tattataaacaaaaattcacattttagatttattcaataaat 4082826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 26045354 - 26045319
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatt 204  Q
    ||||| ||||||||||||||||||||||||||||||    
T  26045354 ggtcactattataaacaaaaatcaacattttagatt 26045319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 10437772 - 10437722
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaattat 219  Q
    ||||| |||||||| ||||||||||||||||||||| ||| | ||||||||    
T  10437772 ggtcactattataagcaaaaatcaacattttagattcatttattaaattat 10437722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 38084210 - 38084260
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    ||||||||||||||||||||||| |||||| | ||||||| ||||| ||||    
T  38084210 tcattattataaacaaaaatcaatattttaaaattattcattaaataatat 38084260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 3100416 - 3100457
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||| ||||||| ||||||||||||| |||||||||||    
T  3100416 tattataagcaaaaattaacattttagattcattcaataaat 3100457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 8717725 - 8717770
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||| ||||||||||| |||||| |||||| |||||||    
T  8717725 tcattattataagcaaaaatcaactttttaggtttatttaataaat 8717770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 13710423 - 13710378
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||||||||||  |||||||||||||||| ||||||||| |||||    
T  13710423 tcattattataagtaaaaatcaacattttatatttattcattaaat 13710378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 18033490 - 18033449
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattca 210  Q
    ||||| |||||||| |||||||| ||||||||||||||||||    
T  18033490 ggtcactattataagcaaaaatctacattttagatttattca 18033449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 28518723 - 28518772
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaatta 218  Q
    ||||| |||||||| |||||||||||||||| |||| ||||||| |||||    
T  28518723 ggtcactattataagcaaaaatcaacattttggattcattcaattaatta 28518772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 33868058 - 33868013
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||| ||||||||||||||||| | ||||||| |||||    
T  33868058 tcattattataagcaaaaatcaacattttataattattcactaaat 33868013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 50308633 - 50308683
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaattat 219  Q
    ||||| |||||||| ||||||||||| ||||||||||||||| ||||||||    
T  50308633 ggtcactattataagcaaaaatcaactttttagatttattcattaaattat 50308683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 6156645 - 6156686
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  6156645 tattataaacaaaaatcaactttttagattcattcaataaat 6156686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 14885330 - 14885374
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaattat 219  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||||    
T  14885330 tattataaaaaaaaatcaacattttaaatttattcattaaattat 14885374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 14885488 - 14885532
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaattat 219  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||||    
T  14885488 tattataaaaaaaaatcaacattttaaatttattcattaaattat 14885532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 24981976 - 24981929
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| |||||    
T  24981976 ggtcactattataagcaaaaatcaacattttagattcattcattaaat 24981929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 6735831 - 6735781
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    |||||||| ||| ||||||||||| ||||||||||||| ||||||| ||||    
T  6735831 tcattattttaagcaaaaatcaactttttagatttattgaataaatgatat 6735781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 50878354 - 50878392
Alignment:
Q  178 tataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  50878354 tataaacaaaaatttacattttagatttattcaataaat 50878392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 14967354 - 14967313
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||| ||||||||||||||||||||| ||||| |||||    
T  14967354 tattataagcaaaaatcaacattttagattcattcattaaat 14967313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 29043461 - 29043506
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||| ||||||||||| |||||| || |||||||||||    
T  29043461 tcattattataagcaaaaatcaactttttaggttcattcaataaat 29043506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 40610968 - 40611013
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||||||||||| |||||| ||||||||| ||| |||||||||||    
T  40610968 tcattattataaataaaaattaacattttaaattcattcaataaat 40611013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 50550248 - 50550207
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||||||| |||||||||||||||||||| ||||| |||||    
T  50550248 tattataaagaaaaatcaacattttagattcattcattaaat 50550207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 52131959 - 52132004
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaattata 220  Q
    |||| ||||||||||| ||||||||| ||| |||||||||||||||    
T  52131959 tattttaaacaaaaattaacattttaaattcattcaataaattata 52132004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 38595643 - 38595683
Alignment:
Q  170 gtcattattataaacaaaaatcaacattttagatttattca 210  Q
    |||||||||||||| |||||| || ||||||||||||||||    
T  38595643 gtcattattataaataaaaattaatattttagatttattca 38595683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 145973 - 146020
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||||||||||||| ||||||||||| ||||| |||||    
T  145973 ggtcactattataaacaaaaatcatcattttagattcattcattaaat 146020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 2943217 - 2943264
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| |||||    
T  2943217 ggtcactattataagcaaaaatcaacattttagattcattcattaaat 2943264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 8127962 - 8127915
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| ||||||||||||||||||||  |||||||| |||||||||||    
T  8127962 ggtcactattataaacaaaaatcaactgtttagattcattcaataaat 8127915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 25245278 - 25245231
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    ||||| |||||||| ||||||||||||||||||||| ||||| |||||    
T  25245278 ggtcactattataagcaaaaatcaacattttagattcattcattaaat 25245231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 38940225 - 38940272
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||||||||| |||||||  |||||||||||| |||||||||||    
T  38940225 ggtcattattataagcaaaaattgacattttagattcattcaataaat 38940272  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 23818430 - 23818476
Alignment:
Q  170 gtcattattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||||    
T  23818430 gtcactattataagcaaaaatcaacattttagattcattcattaaat 23818476  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 31115744 - 31115694
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaattat 219  Q
    ||||| |||||||| |||||||||||||||||| || ||||| ||||||||    
T  31115744 ggtcactattataagcaaaaatcaacattttagcttcattcattaaattat 31115694  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 27330517 - 27330558
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaat 216  Q
    |||||||| ||||||||||||||||||||| ||||| |||||    
T  27330517 tattataagcaaaaatcaacattttagattcattcattaaat 27330558  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 21096196 - 21096244
Alignment:
Q  173 attattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    |||||||||| ||||||| || |||||||||||||||| ||||| ||||    
T  21096196 attattataagcaaaaattaatattttagatttattcattaaataatat 21096244  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 24911659 - 24911615
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatttattcaataaa 215  Q
    ||||||||||||| ||||||  |||||||||||| ||||||||||    
T  24911659 tcattattataaataaaaatttacattttagattaattcaataaa 24911615  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 28321575 - 28321619
Alignment:
Q  175 tattataaacaaaaatcaacattttagatttattcaataaattat 219  Q
    |||| ||| ||||||| ||||||||||||| ||||||||||||||    
T  28321575 tattgtaagcaaaaattaacattttagattcattcaataaattat 28321619  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 89605 - 89638
Alignment:
Q  171 tcattattataaacaaaaatcaacattttagatt 204  Q
    |||||||||||| |||||||||||||||||||||    
T  89605 tcattattataagcaaaaatcaacattttagatt 89638  T

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Target: scaffold0470 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 3976 - 4028
Alignment:
Q  169 ggtcattattataaacaaaaatcaacattttagatttattcaataaattatat 221  Q
    ||||| ||||||||| |||||||||||||||| ||| ||| | ||||||||||    
T  3976 ggtcactattataaataaaaatcaacattttacattcatttactaaattatat 4028  T

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