View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1709-Insertion-1 (Length: 997)
Name: NF1709-Insertion-1
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 801; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 801; E-Value: 0
Query Start/End: Original strand, 8 - 985
Target Start/End: Complemental strand, 9902588 - 9901596
Alignment:
| Q |
8 |
cacatcgagttgtacgccaagatatatgttgcccagaaatgggaaaaggaggaattctgagccagctcttgaggagggggttcacaacgaaaatactatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9902588 |
cacatcgagttgtacgccaagatatatgttgcccaaaaatgggaaaaggaggaattctgagccagctcttgaggagggggttcacaacgaaaatactatt |
9902489 |
T |
|
| Q |
108 |
aacnnnnnnnttccaaagcaacaatattccatcacgagtacaaattatatctcccatttcttgaggtattcccaaattagtcctttcaaattggccattc |
207 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9902488 |
aacaaaaaaattccaaagcaacaatatgccatcacgagtacaaattatatctcccatttcttgaggtattcccaaattagtcctttcaaattggccattc |
9902389 |
T |
|
| Q |
208 |
accccatctttaaattccaaaaaataagaaccactccgtgttgtacgattttcaacgtaaagaccaggtttagaacgtgcacgactttcacacatttgaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9902388 |
accccatctttaaattccaaaaaataagaactactccgtgttgtacgattttcaacgtaaagaccaggtttagaacgtgcacgactttcacacatttgaa |
9902289 |
T |
|
| Q |
308 |
cataaaaagagctggcaataatagcagcccaaggtttgcaaacataccttgcagagttgatcagacaatcaagaggaaccaaagtaaggatataaaacat |
407 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9902288 |
cataaaaggagctggcaataatagcagcccaaggtttgcaaacataccttgcagagttgatcagacaatcaagaggaaccaaagtaaggatataaaacat |
9902189 |
T |
|
| Q |
408 |
caagtcttcaggaagcaacacctttgaaattacttcacaactcttagtggcgtgatcatatgagttagagactgaatcagagcaaattcccttcttcttg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9902188 |
caagtcttcaggaagcaacacctttgaaattacttcacaactcttagtggcgtgatcatatgagttagagactgaatcagagcaaattcccttcttcttg |
9902089 |
T |
|
| Q |
508 |
gatatatttttcttgcttctacgtctagccatttttaattaattaatgttatcctgcgacgatcactggatatagtatattaaaaaagttaaaaaggatt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9902088 |
gatatatttttcttgcttctacgtctagccatttttaattaattaatgttatcctgcgacgatcactgcatatagtatattaaaaaagttaaaaaggatt |
9901989 |
T |
|
| Q |
608 |
taaaatagtttcacnnnnnnnngcttgtgaataaaatgcatgctatgaaagatgaacaaaataaataacaacgctgaa-gaattagactgagttgttgcc |
706 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
9901988 |
taaaatagtttcacagaaaaaagcttgtgaataaaatgcatgctatgaaagatgaacaaaataaataacaacgttgaaggaattagactgagttgttgcc |
9901889 |
T |
|
| Q |
707 |
ctagccgctgcactcgcgtctctctatctcacgatcgt-acttcacttaattttaatttattctatttaattaaaggaaatgtgtgtttgctcaataacg |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9901888 |
ctagccgctgcactcgcgtctctctatctcacgatcgtaacttcacttaattttaatttattctatttaattaaaggaaatgtgtgtttgctcaataacg |
9901789 |
T |
|
| Q |
806 |
ggtctacggcatggcctatt--agtctggtctagactgacttgtttatt-aaaagttaggcttagtttctt--aaaacttattt-agt-aacaagttgat |
898 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
9901788 |
ggtctacggcatggcctatttaggtctggtctagactgacttgtttattaaaaagttaggcttagtttcttaaaaaacttatttaagtaaacaagttgat |
9901689 |
T |
|
| Q |
899 |
tataggctat-agaaaagcgtac-aagtctgaattacc-acatatttatgcatwtctat--aaactt-gatcggatcctaactcctgaataat |
985 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||| |||| |||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
9901688 |
tataggctataagaaaagcatacaaagtctgatataccaacatatttatgcatatctattaaaacttggatcggatcctaactcctgaataat |
9901596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 151 - 452
Target Start/End: Complemental strand, 9846571 - 9846270
Alignment:
| Q |
151 |
attatatctcccatttcttgaggtattcccaaattagtcctttcaaattggccattcaccccatctttaaattccaaaaaataagaaccactccgtgttg |
250 |
Q |
| |
|
||||||| |||||| |||||||| ||||||||| |||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||| |||||| |
|
|
| T |
9846571 |
attatattccccattccttgaggtgttcccaaatcagtcctttcaaattggtcattcacatcatctttaaattccaagaaataagaactactctgtgttg |
9846472 |
T |
|
| Q |
251 |
tacgattttcaacgtaaagaccaggtttagaacgtgcacgactttcacacatttgaacataaaaagagctggcaataatagcagcccaaggtttgcaaac |
350 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||| ||| |||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
9846471 |
tgcgattttcaacataaagaccaggtttagaacgtgcacggctttcgcacatttcaacaaaaagggagctggcaatagtagcagcccaagctttacaaac |
9846372 |
T |
|
| Q |
351 |
ataccttgcagagttgatcagacaatcaagaggaaccaaagtaaggatataaaacatcaagtcttcaggaagcaacacctttgaaattacttcacaactc |
450 |
Q |
| |
|
|||||||||||| || ||||| || | |||| ||||||| ||||||||| ||||| ||||| |||||||||||||| | ||||||| |||||||||||| |
|
|
| T |
9846371 |
ataccttgcagaattaatcaggcagttaagatgaaccaacctaaggatatcaaacaccaagtgttcaggaagcaacagcgttgaaatcacttcacaactc |
9846272 |
T |
|
| Q |
451 |
tt |
452 |
Q |
| |
|
|| |
|
|
| T |
9846271 |
tt |
9846270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 123 - 554
Target Start/End: Complemental strand, 9841520 - 9841089
Alignment:
| Q |
123 |
aagcaacaatattccatcacgagtacaaattatatctcccatttcttgaggtattcccaaattagtcctttcaaattggccattcaccccatctttaaat |
222 |
Q |
| |
|
||||| |||||| ||||||| | ||| |||| || ||| | || ||||||| |||| |||| |||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
9841520 |
aagcagcaatatgccatcacaactaccgattacatatcctagtttttgaggtgttcctaaatcagtcctttcaaattggtcattcacatcatctttaaat |
9841421 |
T |
|
| Q |
223 |
tccaaaaaataagaaccactccgtgttgtacgattttcaacgtaaagaccaggtttagaacgtgcacgactttcacacatttgaacataaaaagagctgg |
322 |
Q |
| |
|
||||| |||||||||| ||| ||| || | ||||| ||| || |||||||| |||||||||| ||| | ||| | || | || || ||||| | |
|
|
| T |
9841420 |
tccaagaaataagaactacttgttgtggtgcaattttgaacatatagaccaggcttagaacgtggacggcgttcgtatgcttcagcaaaaggggagcttg |
9841321 |
T |
|
| Q |
323 |
caataatagcagcccaaggtttgcaaacataccttgcagagttgatcagacaatcaagaggaaccaaagtaaggatataaaacatcaagtcttcaggaag |
422 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||| | || || |||||||||||||||||||| || ||||| |||||||||| |||| |
|
|
| T |
9841320 |
caatagtagcagcccaaggtttgcaaacatatcttgcagagttaaacaagcaggtaagaggaaccaaagtaaggacatgaaacaacaagtcttcaagaag |
9841221 |
T |
|
| Q |
423 |
caacacctttgaaattacttcacaactcttagtggcgtgatcatatgagttagagactgaatcagagcaaattcccttcttcttggatatatttttcttg |
522 |
Q |
| |
|
||||| ||||||||| |||| |||||||||| ||||||||| |||||||||| ||||||||||| || ||||||| ||||| | || ||| | |
|
|
| T |
9841220 |
caacaactttgaaatcactttacaactcttatcatcgtgatcatgtgagttagagtctgaatcagaggaaccgtgcttcttcatggattgaattctctgg |
9841121 |
T |
|
| Q |
523 |
cttctacgtctagccatttttaattaattaat |
554 |
Q |
| |
|
|||||||||||| ||||||| |||||| |||| |
|
|
| T |
9841120 |
cttctacgtctatccattttcaattaactaat |
9841089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 9860237 - 9860185
Alignment:
| Q |
49 |
ggaaaaggaggaattctgagccagctcttgaggagggggttcacaacgaaaat |
101 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||||||||||||| |||||||| |
|
|
| T |
9860237 |
ggaaaaggaggaattctaagccaacacttgaggagggggttcaccacgaaaat |
9860185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 189 - 418
Target Start/End: Original strand, 5054814 - 5055043
Alignment:
| Q |
189 |
cctttcaaattggccattcaccccatctttaaattccaaaaaataagaaccactccgtgttgtacgattttcaacgtaaagaccaggtttagaacgtgca |
288 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| |||||||||| || |||| || |||||||||||||||||| |||||||||||||| |
|
|
| T |
5054814 |
cctttcaaattggccattcacattgtctttgaattccaagaaataagaactaccatatgtttcacagttttcaacgtaaagaccaagtttagaacgtgca |
5054913 |
T |
|
| Q |
289 |
cgactttcacacatttgaacataaaaagagctggcaataatagcagcccaaggtttgcaaacataccttgcagagttgatcagacaatcaagaggaacca |
388 |
Q |
| |
|
|| |||||| | || || | ||| |||||| ||||| |||||||||| | |||||| |||||||||| |||||| | ||| | | || |||||||| |
|
|
| T |
5054914 |
cggtgttcacaaacttcaaaaaaaagggagctgccaatagtagcagcccatgatttgcatacataccttgtagagttaaacagtgagttaataggaacca |
5055013 |
T |
|
| Q |
389 |
aagtaaggatataaaacatcaagtcttcag |
418 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| |
|
|
| T |
5055014 |
aagtaaagatatgaaacatcaagtcttcag |
5055043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 122 - 427
Target Start/End: Complemental strand, 46445525 - 46445217
Alignment:
| Q |
122 |
aaagcaacaatattccatcacgagtacaaattatatctcccatttcttgaggtattcccaaattagtcctttcaaattggccattcaccccatctttaaa |
221 |
Q |
| |
|
|||| ||||||| ||||||| ||||| |||||||| ||||| | || ||||||||| |||| | ||||||||||||||| ||||| |||| ||||| |
|
|
| T |
46445525 |
aaagaaacaataagccatcacaagtactaattatatatcccagattttcaggtattccaaaatcaaacctttcaaattggccgttcacatcatcattaaa |
46445426 |
T |
|
| Q |
222 |
ttccaaaaaataagaaccactccgtgttgtacga--ttttcaacgtaaagaccaggtttagaacgtgcacgacttt---cacacatttgaacataaaaag |
316 |
Q |
| |
|
|||||| |||||||||| ||| |||| |||| |||||||| || |||||| |||||||||||| || ||||| || | || |||| || | |
|
|
| T |
46445425 |
ttccaagaaataagaacg--tccttgtttcacgagattttcaacatacagaccaagtttagaacgtggacaactttgttcataagcttcaacaaaacggg |
46445328 |
T |
|
| Q |
317 |
agctggcaataatagcagcccaaggtttgcaaacataccttgcagagttgatcagacaatcaagaggaaccaaagtaaggatataaaacatcaagtcttc |
416 |
Q |
| |
|
||||| ||||| || |||||||| | |||||||| ||||||||||||| | ||| || ||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
46445327 |
agctgtgaataacagtagcccaagatatgcaaacaaaccttgcagagttaagcaggcagctaagaggaaccaaagtaaataaataaagcatcaagtcttc |
46445228 |
T |
|
| Q |
417 |
aggaagcaaca |
427 |
Q |
| |
|
||||||||||| |
|
|
| T |
46445227 |
aggaagcaaca |
46445217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 122 - 453
Target Start/End: Original strand, 46672642 - 46672972
Alignment:
| Q |
122 |
aaagcaacaatattccatcacgagtacaaattatatctccca---tttcttgaggtattcccaaattagtcctttcaaattggccattcaccccatcttt |
218 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||| ||| ||||| |||| | ||||||||||||||||| |||||||||||| |||||||| | ||||| |
|
|
| T |
46672642 |
aaagcaacaatatgccatcacaagtactgattttatatcccagtttttcattaggtattcccaaattaggcctttcaaattgaccattcacatcgtcttt |
46672741 |
T |
|
| Q |
219 |
aaattccaaaaaataagaaccactccgtgttgtacgattttcaacgtaaagaccaggtttagaacgtgcacgactttcacacatttgaacataaaaagag |
318 |
Q |
| |
|
||| ||||| |||||||||| || |||| ||| ||| |||||| || ||| || |||||||||||||| ||| ||| ||| ||| ||| ||| | |
|
|
| T |
46672742 |
aaactccaagaaataagaacgaccttgtgtggtatgatcttcaacatatagatcaagtttagaacgtgcaagacattcgcacgtttcaac----aaaatg |
46672837 |
T |
|
| Q |
319 |
ctggcaataatagcagcccaaggtttgcaaacataccttgcagagttgatcagacaatcaagaggaaccaaagtaaggatataaaacatcaagtcttcag |
418 |
Q |
| |
|
|| |||| | | |||||| | || ||||||||| ||||||| || | ||| | ||||||||||||||||| ||| ||||||| |||||||| || |
|
|
| T |
46672838 |
ttgttaatagttgtagcccatgacttacaaacatactttgcagaattaagcaggtatgtaagaggaaccaaagtaaagatgtaaaacaacaagtcttaag |
46672937 |
T |
|
| Q |
419 |
gaagcaacacctttgaaattacttcacaactctta |
453 |
Q |
| |
|
||||||| | ||| ||||| | || |||||||||| |
|
|
| T |
46672938 |
gaagcaaaaacttagaaatgagtttacaactctta |
46672972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 4e-19; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 324 - 453
Target Start/End: Complemental strand, 4145197 - 4145068
Alignment:
| Q |
324 |
aataatagcagcccaaggtttgcaaacataccttgcagagttgatcagacaatcaagaggaaccaaagtaaggatataaaacatcaagtcttcaggaagc |
423 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||||||||| | |||||| | || ||| | ||| ||||||||| ||||| |||||||||||| | |
|
|
| T |
4145197 |
aatagtagtagcccaagatttgcaaacataccttgcagagttaagcagacatttaacagggagaaaactaaggatatcaaacaccaagtcttcagggatt |
4145098 |
T |
|
| Q |
424 |
aacacctttgaaattacttcacaactctta |
453 |
Q |
| |
|
|||| ||||||||| |||| |||||||||| |
|
|
| T |
4145097 |
aacaactttgaaatcactttacaactctta |
4145068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 151 - 455
Target Start/End: Original strand, 2326923 - 2327227
Alignment:
| Q |
151 |
attatatctcccatttcttgaggtattcccaaattagtcctttcaaattggccattcaccccatctttaaattccaaaaaataagaaccactccgtgttg |
250 |
Q |
| |
|
||||||||||||||| | ||||||||| |||| |||||||||||||||| | ||||| ||||||||||||||| ||||||||| | || |
|
|
| T |
2326923 |
attatatctcccattattgaaggtattcctaaatcagtcctttcaaattggtcgttcacataatctttaaattccaagaaataagaattgtccggttcca |
2327022 |
T |
|
| Q |
251 |
tacgattttcaacgtaaagaccaggtttagaacgtgcacgactttcacacatttgaacataaaaagagctggcaataatagcagcccaaggtttgcaaac |
350 |
Q |
| |
|
| | ||||||||| ||||||||| |||||||| ||||| | | ||| | || | || || |||||| ||||| |||||||||| ||||| || |
|
|
| T |
2327023 |
tgcaattttcaacataaagaccaagtttagaatgtgcatggcgttcgtatgcttcagcaaaatgggagctgccaatagtagcagcccacagtttgtttac |
2327122 |
T |
|
| Q |
351 |
ataccttgcagagttgatcagacaatcaagaggaaccaaagtaaggatataaaacatcaagtcttcaggaagcaacacctttgaaattacttcacaactc |
450 |
Q |
| |
|
||||||||||||||| | ||| |||| ||||||||| ||||||| ||||| |||| ||||||||||| | || | || ||||||||| | || ||||||| |
|
|
| T |
2327123 |
ataccttgcagagttaagcaggcaattaagaggaacaaaagtaaagatatgaaacctcaagtcttcaagtagaagcaactttgaaatcattttacaactc |
2327222 |
T |
|
| Q |
451 |
ttagt |
455 |
Q |
| |
|
||||| |
|
|
| T |
2327223 |
ttagt |
2327227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 324 - 453
Target Start/End: Complemental strand, 39571684 - 39571555
Alignment:
| Q |
324 |
aataatagcagcccaaggtttgcaaacataccttgcagagttgatcagacaatcaagaggaaccaaagtaaggatataaaacatcaagtcttcaggaagc |
423 |
Q |
| |
|
|||| |||| ||||||| |||||||||||| |||| |||||| || || | || ||||||||||||| ||| ||||| ||||| || |||||||| ||| |
|
|
| T |
39571684 |
aatagtagccgcccaagatttgcaaacatatcttgtagagttaattaggctattaagaggaaccaaactaaagatatcaaacaataaatcttcagggagc |
39571585 |
T |
|
| Q |
424 |
aacacctttgaaattacttcacaactctta |
453 |
Q |
| |
|
| || ||||||||| |||| |||||||||| |
|
|
| T |
39571584 |
agcaactttgaaatcactttacaactctta |
39571555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 284
Target Start/End: Complemental strand, 39571879 - 39571724
Alignment:
| Q |
129 |
caatattccatcacgagtacaaattatatctcccatttcttgaggtattcccaaattagtcctttcaaattggccattcaccccatctttaaattccaaa |
228 |
Q |
| |
|
|||||| ||||||| ||||| |||| ||| |||||| ||||||| || |||||| | ||||||||||||| | ||||| ||||||||| ||||| |
|
|
| T |
39571879 |
caatatgccatcacaagtactgattaaatcccccattgtttgaggtgtttccaaatcaatcctttcaaattgcctattcatatcatctttaatatccaag |
39571780 |
T |
|
| Q |
229 |
aaataagaaccactccgtgttgtacgattttcaacgtaaagaccaggtttagaacg |
284 |
Q |
| |
|
|||||||||| ||| || | || ||||||||||||| |||| |||||||||| |
|
|
| T |
39571779 |
aaataagaactactttttgacatgcggttttcaacgtaaataccaagtttagaacg |
39571724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 453
Target Start/End: Complemental strand, 39575672 - 39575561
Alignment:
| Q |
342 |
tttgcaaacataccttgcagagttgatcagacaatcaagaggaaccaaagtaaggatataaaacatcaagtcttcaggaagcaacacctttgaaattact |
441 |
Q |
| |
|
|||||||||||| |||| |||||| || | |||| ||||||||||||| | | ||||| ||||| || ||||||||| |||| ||| |||| ||| || |
|
|
| T |
39575672 |
tttgcaaacatatcttgtagagttaattatgcaattaagaggaaccaaactgaagatatcaaacaacaggtcttcagggagcagcacttttggaatctct |
39575573 |
T |
|
| Q |
442 |
tcacaactctta |
453 |
Q |
| |
|
| |||||||||| |
|
|
| T |
39575572 |
ttacaactctta |
39575561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 284
Target Start/End: Complemental strand, 39575885 - 39575730
Alignment:
| Q |
129 |
caatattccatcacgagtacaaattatatctcccatttcttgaggtattcccaaattagtcctttcaaattggccattcaccccatctttaaattccaaa |
228 |
Q |
| |
|
|||||| ||||||| ||||| |||| |||||||||| ||| ||| ||||||||| | ||||||||||||| ||| ||| ||||||||| ||||| |
|
|
| T |
39575885 |
caatatgccatcacaagtactgattaaatctcccattgtttggggtgttcccaaatcaatcctttcaaattgaccactcatatcatctttaatatccaag |
39575786 |
T |
|
| Q |
229 |
aaataagaaccactccgtgttgtacgattttcaacgtaaagaccaggtttagaacg |
284 |
Q |
| |
|
||||| |||| ||| | | || |||||||||||||||||| |||||||||| |
|
|
| T |
39575785 |
aaataggaactactttcttccatgcgcttttcaacgtaaagaccaagtttagaacg |
39575730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 159 - 365
Target Start/End: Complemental strand, 7256334 - 7256128
Alignment:
| Q |
159 |
tcccatttcttgaggtattcccaaattagtcctttcaaattggccattcaccccatctttaaattccaaaaaataagaaccactccgtgttgtacgattt |
258 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||||||||| |||||||| || | ||||||||||||||| |||||||| ||| | | |||| |
|
|
| T |
7256334 |
tcccattttttgaggtgttcccaaatcagtcctttcaaagtggccattgacactatctttaaattccaagaaataagatttgtcttgtgccatgcaattt |
7256235 |
T |
|
| Q |
259 |
tcaacgtaaagaccaggtttagaacgtgcacgactttcacacatttgaacataaaaagagctggcaataatagcagcccaaggtttgcaaacataccttg |
358 |
Q |
| |
|
|||||||||||||| ||||| |||| | | |||| |||| || || | || || |||||| |||| |||||||||||||||||||||||||||| | |
|
|
| T |
7256234 |
tcaacgtaaagaccgggtttcgaacatcctcgacgttcatacgcttcagcaaaatgggagctgccaattgtagcagcccaaggtttgcaaacatacctcg |
7256135 |
T |
|
| Q |
359 |
cagagtt |
365 |
Q |
| |
|
||||||| |
|
|
| T |
7256134 |
cagagtt |
7256128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 49388122 - 49388200
Alignment:
| Q |
160 |
cccatttcttgaggtattcccaaattagtcctttcaaattggccattcaccccatctttaaattccaaaaaataagaac |
238 |
Q |
| |
|
||||||| ||||| | ||||||||| |||| |||||||||||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
49388122 |
cccattttttgagatgttcccaaatcagtcttttcaaattggccattcaaatcatctttgaattccaagaaataagaac |
49388200 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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