View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709-Insertion-10 (Length: 723)

Name: NF1709-Insertion-10
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709-Insertion-10
NF1709-Insertion-10
[»] chr5 (1 HSPs)
chr5 (8-693)||(41167054-41167738)
[»] scaffold0449 (1 HSPs)
scaffold0449 (279-340)||(621-682)


Alignment Details
Target: chr5 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 8 - 693
Target Start/End: Original strand, 41167054 - 41167738
Alignment:
Q  8 gtttttgtgttatttatacttgttcaccataatctcctcttagttatgagtttctaattcattgttatgnnnnnnnnnnnnnnnnngatcataggttttg 107  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||                 ||||||||||||||    
T  41167054 gtttttgtgttatttatacttgttcaccataatctcctcttaattatgagtttctaattcattgttatgtttttttcactttttt-gatcataggttttg 41167152  T
Q  108 agactgttacatatatgttacaggtaacttttgggtcatttcttttttgttattacaaagtcaaaggtatagaatataatataaaggccattataggggg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41167153 agactgttacatatatgttacaggtaacttttgggtcatttcttttttgttattacaaagtcaaaggtatagaatataatataatggccattataggggg 41167252  T
Q  208 aataaattaatagtattacga----aaagaaaactatagtaaactaaacatttagtttttgatttaannnnnnnattctatgttagctcaaagtttgtta 303  Q
    ||||||||||||||||||  |    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  41167253 aataaattaatagtattattacaaaaaagaaaactatagtaaactaaacatttagtttttgatttaatttttttattctatgttagctcaaagtttgtta 41167352  T
Q  304 gttgagctaaatattcaactcaatatggtattaatctgtgtgctagtacgtggtatgtcacatatatcatgtcttgtttatttttctagaaggtcaacta 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41167353 gttgagctaaatattcaactcaatatggtattaatctgtgtgctagt----ggtatgtcacatatatcatgtcttgtttatttttctagaaggccaacta 41167448  T
Q  404 ctagcttgagtgaacttaagttttttgcatgcaatattggttacgcatgcttgtgctaacttcatcttaatgtatttgtttgtgaaattaagggtgcagt 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41167449 ctagcttgagtgaacttaagttttttgcatgcaatattggttacgcatgcttgtgctaacttcatcttaatgtatttgtttgtgaaattaagggtgcagt 41167548  T
Q  504 aacacatgaagattttgaaggacacaagggaacaattgaagctggtgacttgcagtggatgactgctggtagagggatagtgcactcagaaatgcctgct 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41167549 aacacatgaagattttgaaggacacaagggaacaattgaagctggtgacttgcagtggatgactgctggtagagggatagtgcactcagaaatgcctgct 41167648  T
Q  604 tctcaaggaatccaaaagggtctgcagctatggatcaaccttgcttcccagcataaaatgtaagtcaacaatagataacttaaaatctcg 693  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41167649 tctcaaggaatccaaaagggtctacagctatggatcaaccttgcttcccagcataaaatgtaagtcaacaatagataacttaaaatctcg 41167738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 682 - 621
Alignment:
Q  279 ttctatgttagctcaaagtttgttagttgagctaaatattcaactcaatatggtattaatct 340  Q
    ||||||||||||| ||||||||||||||| | |||||| |    ||||||||||||||||||    
T  682 ttctatgttagcttaaagtttgttagttgggataaatagtttgttcaatatggtattaatct 621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University