View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-14 (Length: 661)
Name: NF1709-Insertion-14
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-14 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 7 - 661
Target Start/End: Complemental strand, 783839 - 783182
Alignment:
| Q |
7 |
aattttaatatctgtaatagtattctaagtgattagttaccaagatttgatcataaagtaacctcaaaaagaacatactcctaatattgagatccaaccc |
106 |
Q |
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| T |
783839 |
aattttaatatctgtaatagtattctaagtgattagttaccaagatttgatcataaagtaacctcaaaaagaacatactcctaatattgagatccaaccc |
783740 |
T |
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| Q |
107 |
ctcacccaacnnnnnnnnnnnnnn---cttgatggatgagttggttattttatttctgaagtatttacttttccnnnnnnnnnnnnnnnnnntttcctca |
203 |
Q |
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| T |
783739 |
ctcacccaacaaaaaaagaaaaaaaaacttgatggatgagttggttattttatttctgaagtatttacttttccctctctctatctctctcttttcctca |
783640 |
T |
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| Q |
204 |
ttcttttgaaagagttaactatgcttcctttgtttttggcattggcttaatcctctttgcccttgaatacnnnnnnnctccaacaagtgcaatagcagtt |
303 |
Q |
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| T |
783639 |
ttcttttgaaagagttaactatgcttcctttgtttttggcattggcttaatcctctttgcccttgaatacaagaaaactccaacaagtgcaatagcagtt |
783540 |
T |
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| Q |
304 |
cctgcagccaaaattagcaccacaaaaaagtaaatgaaaatggcgagaaaatatcgaatatatattctatcatgtttattggttgacgtgaaaattaaaa |
403 |
Q |
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| T |
783539 |
cctgcagccaaaattagcaccacaaaaaagtaaatgaaaatggcgagaaaatatcgaatatatattctatcatgtttattggttgacgtgaaaattaaaa |
783440 |
T |
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| Q |
404 |
gaagaaatatggatagtaaatggtcccataagttgtagcaatttttgtgacttcgaagacaccaaaaatttgcaagtacttgaaaatatgtggaccatta |
503 |
Q |
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| T |
783439 |
gaagaaatatggatagtaaatggtcccataagttgtagcaatttttgtgacttcgaagacaccaaaaatttgcaagtacttgaaaatatgtggaccatta |
783340 |
T |
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| Q |
504 |
gagagacttaccaagggcattgataggtgagacaggagtttggaagaagataacagaagagacgatgacaacgacacgcttaacacaatttccgactgag |
603 |
Q |
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| T |
783339 |
gagagacttaccaagggcattgataggtgagacaggagtttggaagaagataacagaagagacgatgacaacgacacgcttaacgcaatttccgactgag |
783240 |
T |
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| Q |
604 |
tgtgtcacaggtgacactttctctaatatcccatatgaaacctgccaccaaatgaatt |
661 |
Q |
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| T |
783239 |
tgtgtcacaggtgacactttctctaatatcccatatgaaacctgccaccaaatgaatt |
783182 |
T |
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