View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-15 (Length: 661)
Name: NF1709-Insertion-15
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-15 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 6e-57; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 243 - 391
Target Start/End: Complemental strand, 10156938 - 10156790
Alignment:
| Q |
243 |
gatatactatattttatcagcgtgcacatataaaatgaaatacaggctatgatacaaattattcagacacaataagctggttggctaatgaggcacatgg |
342 |
Q |
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| T |
10156938 |
gatatactatattttattagcatgcacatgtaaaataaaatacaggctatgatacaaattattcagacagtataagctggttggctaatggtgcacatgg |
10156839 |
T |
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| Q |
343 |
aaactgaaaattgagtgctcagttgaatcaccaaaacaaattattcact |
391 |
Q |
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| T |
10156838 |
aaactgaaaattgagtggtcagttgaatcaccaaaacaaattattcact |
10156790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 10157238 - 10157143
Alignment:
| Q |
59 |
tttccaacagctgatataaaagatttggtttggtagaatattaaattcttagtatgttatgtggttgccgccttgtctaatctttgtacatcataa |
154 |
Q |
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| T |
10157238 |
tttccaacagctgatataaaagatttggttcagtagaatattaaattcttagtatgctatatggttgccgccgtgtctgatctttgtaaatcataa |
10157143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 10157126 - 10157053
Alignment:
| Q |
80 |
gatttggtttggtagaatattaaattcttagtatgttatgtggttgccgccttgtctaatctttgtacatcataa |
154 |
Q |
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| T |
10157126 |
gatttggttcgatagaatattaaattcttagtatgctatgtggttg-cgccttatctgatctttgtacgtcataa |
10157053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 10157000 - 10156966
Alignment:
| Q |
204 |
cttctgattatttgatcatttttccacatcttctt |
238 |
Q |
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| T |
10157000 |
cttctgattattagatcatttttccacatcttctt |
10156966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 15806426 - 15806307
Alignment:
| Q |
59 |
tttccaacagctgatataaaagatttggtttggtagaatattaaattcttagtatgttatgtggttgccgccttgtctaatctttgtacatcataaggnn |
158 |
Q |
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| T |
15806426 |
tttccaacagctgatattaaatatttgattcggtagaatattaaattcttagtatgctatgtggttg-cgccttgtctgatctttgtacatcataaggaa |
15806328 |
T |
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| Q |
159 |
nnnnntggtgatgatgtgaac |
179 |
Q |
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| T |
15806327 |
aaaaatggtgatgatgtgaac |
15806307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 528 - 628
Target Start/End: Complemental strand, 15828280 - 15828184
Alignment:
| Q |
528 |
aaccgagtttgagttcmaagatccttgaggttaagaccattgaatgtattgatgagtataagagccctttgtagcatcccttagttatacataagtaatt |
627 |
Q |
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| T |
15828280 |
aaccgagtttgagttc-aagatccttgaggttaagaccattgaatatattgatgagtataagagcc--ttgtagcat-ccttagctatacataagtaatt |
15828185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 15806247 - 15806204
Alignment:
| Q |
245 |
tatactatattttatcagcgtgcacatataaaatgaaatacaggc |
289 |
Q |
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| T |
15806247 |
tatactatattt-attagcgtgcacatgtaaaatgaaatacaggc |
15806204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 512 - 593
Target Start/End: Original strand, 37218355 - 37218435
Alignment:
| Q |
512 |
tgatcaagattgataaaaccgagtttgagttcmaagatccttgaggttaagaccattgaatgtattgatgagtataagagcc |
593 |
Q |
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| T |
37218355 |
tgatcaagatcgataaaaccgagttcgagttc-aagagccttgagattaagaccaatgaatctattgatgagtacaagagcc |
37218435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 512 - 593
Target Start/End: Original strand, 37224071 - 37224151
Alignment:
| Q |
512 |
tgatcaagattgataaaaccgagtttgagttcmaagatccttgaggttaagaccattgaatgtattgatgagtataagagcc |
593 |
Q |
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| T |
37224071 |
tgatcaagatcgataaaaccgagttcgagttg-aagagccttgagattaagaccaatgaatctattgatgagtacaagagcc |
37224151 |
T |
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