View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-16 (Length: 641)
Name: NF1709-Insertion-16
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-16 |
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Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 7 - 634
Target Start/End: Complemental strand, 9473288 - 9472655
Alignment:
| Q |
7 |
atgttgaggttcattcaacaaggcagaatcattgaacaatgttagttccttccaaaattctggttctcactttacctgcmtgtgacgtgagagcatgaat |
106 |
Q |
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| T |
9473288 |
atgttgaggttcattcaacaagccagaatcattgaacaatgttagttccttccaaaattctggttctcactttacctgcatgtgacgtgagagcatgaat |
9473189 |
T |
|
| Q |
107 |
gggtatctccatacatgatgaatgactgcataagagaactataatagggttgtttcaatataaatgtatatcagttaatgatgcttaatctatgtacctc |
206 |
Q |
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| T |
9473188 |
aggtatctccatacatgatgaatgactgcataagagaactataatagggttgtttcaatataaatgtatatcagttaatgatggttaatctatgtacctc |
9473089 |
T |
|
| Q |
207 |
ataatcctataataggggtcttaagatattctggtttctcccctatggaagttcttgtgtcatactcttgattatatatggtggatgtttgttgtgtttg |
306 |
Q |
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| T |
9473088 |
ataatcctataataggggtcttaagatattctggtttctcccctatggaagttcttgtgtcatactcttgattatatatggtggatgtttgttgtttttg |
9472989 |
T |
|
| Q |
307 |
aatggtctatttgatgagtatgtattaggtttttgttgaggtctatttcatccttat--aactgatttgaaagatgaattaataaattattttg------ |
398 |
Q |
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| T |
9472988 |
aatggtctatttgatgagtatggattaggtttttgttgaggtctattttatccttataaaactgatttgaaagatgaattaataaattattttgaagtct |
9472889 |
T |
|
| Q |
399 |
taccgttttttattatgggacttatttaatcgacattatattggtctgagtgaaactgaactcagatcccgtaacgttttccttggaagtttataagaga |
498 |
Q |
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| T |
9472888 |
taccgttttttattataggacttatttaatcgacattatattggtctgagtgaaactgaactcagatcctgtagcatttttcttcgaagtttataagaga |
9472789 |
T |
|
| Q |
499 |
acatcatccttctttataaggttgtctaatatggacccggttcaacggtggatcctcttatttctataaaatttannnnnnnactaaaaatagtaaaaga |
598 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
9472788 |
acatcatcattctttataaggttgtctaatatggacccggtccaacggtggatcctcttatttctataaaatttatttttttactaaaaatagt-aaagg |
9472690 |
T |
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| Q |
599 |
tccaccttttaaaccatattttgagaggttgatatt |
634 |
Q |
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| T |
9472689 |
tccacc-tttgaaccatattttgagaggttgatatt |
9472655 |
T |
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