View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709-Insertion-17 (Length: 616)

Name: NF1709-Insertion-17
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709-Insertion-17
NF1709-Insertion-17
[»] chr1 (5 HSPs)
chr1 (427-616)||(9506384-9506568)
chr1 (217-348)||(9506015-9506146)
chr1 (8-83)||(9505798-9505873)
chr1 (221-279)||(49349131-49349189)
chr1 (362-395)||(9506158-9506191)
[»] chr7 (5 HSPs)
chr7 (532-614)||(40687011-40687090)
chr7 (221-281)||(45877577-45877637)
chr7 (221-281)||(11592184-11592244)
chr7 (221-281)||(33351533-33351593)
chr7 (221-281)||(32629106-32629166)
[»] chr5 (4 HSPs)
chr5 (221-281)||(2077200-2077260)
chr5 (221-281)||(20317485-20317545)
chr5 (10-75)||(26263-26328)
chr5 (221-281)||(1289256-1289316)
[»] chr4 (2 HSPs)
chr4 (221-281)||(23908030-23908090)
chr4 (221-281)||(48624255-48624315)
[»] chr3 (2 HSPs)
chr3 (221-281)||(52137684-52137744)
chr3 (221-281)||(51449432-51449492)
[»] chr8 (1 HSPs)
chr8 (223-281)||(31977161-31977219)
[»] chr2 (1 HSPs)
chr2 (221-281)||(8179286-8179346)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 427 - 616
Target Start/End: Original strand, 9506384 - 9506568
Alignment:
Q  427 gaagaacattttttcacttacataagaaaatttgagacaatatgaaaccctaataactaatttggtctcactcagtcctcacctcaacagtcatccctca 526  Q
    |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||     |||||||||||    
T  9506384 gaagaacaatttatcacttacataagaaaatttgagaccatatgaaaccctaataactaatttggtctcactcagtcctcaact-----gtcatccctca 9506478  T
Q  527 ccagctcacccactctttctcgccggccaccgtaagcttctcacttttccaggctttcattttcatgtttcactttcagagttgtttttt 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9506479 ccagctcacccactctttctcgccggccaccgtaagcttctcacttttccaggctttcattttcatgtttcactttcagagttgtttttt 9506568  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 217 - 348
Target Start/End: Original strand, 9506015 - 9506146
Alignment:
Q  217 gataagcgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggagggagnnnnnnnnttaccaaacaatttaactttaatttta 316  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  9506015 gataagcgaagcaaaaacctaagcttttgaagggttataccaatccttatgcaccaaggagggagaaaaaaaattaccaaacaatttaactttaatttta 9506114  T
Q  317 aagctctaaatttgactttatagcactaaaac 348  Q
    ||||||||||||||||||||||||||||||||    
T  9506115 aagctctaaatttgactttatagcactaaaac 9506146  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 9505798 - 9505873
Alignment:
Q  8 gagacaatatgtcacatgatattataatagtagcaaaaaatacgccgggagaatcaatagcttttggatccaaggt 83  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9505798 gagacaatatgtcacatgagattataatagtagcaaaaaatacgccgggagaatcaatagcttttggatccaaggt 9505873  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 49349189 - 49349131
Alignment:
Q  221 agcgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggaggg 279  Q
    |||||||| | ||| |||||||||||||| ||||||||||| ||| | |||||||||||    
T  49349189 agcgaagcgagaactcaagcttttgaaggattataccaatctttaggtaccaaggaggg 49349131  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 395
Target Start/End: Original strand, 9506158 - 9506191
Alignment:
Q  362 ttaaacataaataatttggtaaaacgcaagtgat 395  Q
    ||||||||||||||||| ||||||||||||||||    
T  9506158 ttaaacataaataatttagtaaaacgcaagtgat 9506191  T

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Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 532 - 614
Target Start/End: Original strand, 40687011 - 40687090
Alignment:
Q  532 tcacccactctttctcgccggccaccgtaagcttctcacttttccaggctttcattttcatgtttcactttcagagttgtttt 614  Q
    |||||| ||||||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||| |||||||    
T  40687011 tcaccccctctttctcgccggccaccgtaagcttctcactctt---ggctttcattttcatgtttcactttcagacttgtttt 40687090  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 45877637 - 45877577
Alignment:
Q  221 agcgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggagggag 281  Q
    |||||||||| ||| ||||||||||||||||||| |||||||||  |||||||||||||||    
T  45877637 agcgaagcaagaactcaagcttttgaagggttattccaatccttcggcaccaaggagggag 45877577  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 11592184 - 11592244
Alignment:
Q  221 agcgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggagggag 281  Q
    |||||||| | ||| |||||||||||||| ||||||||||| ||| | |||||||||||||    
T  11592184 agcgaagcgagaactcaagcttttgaaggattataccaatctttaggtaccaaggagggag 11592244  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 33351593 - 33351533
Alignment:
Q  221 agcgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggagggag 281  Q
    |||||||| | ||| |||||||||||||| ||||||||||| ||| | |||||||||||||    
T  33351593 agcgaagcgagaactcaagcttttgaaggattataccaatctttaggtaccaaggagggag 33351533  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 32629106 - 32629166
Alignment:
Q  221 agcgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggagggag 281  Q
    |||||||| | ||| ||||| |||||||| |||||| |||| ||| |||||||||||||||    
T  32629106 agcgaagcgagaactcaagcatttgaaggattatactaatctttaggcaccaaggagggag 32629166  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 2077260 - 2077200
Alignment:
Q  221 agcgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggagggag 281  Q
    |||||||| | ||| |||||||||||||| ||||||||||| ||| | |||||||||||||    
T  2077260 agcgaagcgagaactcaagcttttgaaggattataccaatctttaggtaccaaggagggag 2077200  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 20317485 - 20317545
Alignment:
Q  221 agcgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggagggag 281  Q
    |||||||| | ||| |||||||||||||| ||||||||||| ||| | |||||||||||||    
T  20317485 agcgaagcgagaactcaagcttttgaaggattataccaatctttaggtaccaaggagggag 20317545  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 26263 - 26328
Alignment:
Q  10 gacaatatgtcacatgatattataatagtagcaaaaaatacgccgggagaatcaatagcttttgga 75  Q
    ||||| ||| ||||||| |||| ||||||||||||||| |||  ||||||||||| || |||||||    
T  26263 gacaagatgacacatgagattaaaatagtagcaaaaaagacgttgggagaatcaagaggttttgga 26328  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 1289316 - 1289256
Alignment:
Q  221 agcgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggagggag 281  Q
    |||||||| | ||| |||||||||||||| ||||||||||| ||| | || ||||||||||    
T  1289316 agcgaagcgagaactcaagcttttgaaggattataccaatctttaggtactaaggagggag 1289256  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 23908090 - 23908030
Alignment:
Q  221 agcgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggagggag 281  Q
    |||||||| | ||| |||||||||||||| ||||||||||| ||| | |||||||||||||    
T  23908090 agcgaagcgagaactcaagcttttgaaggattataccaatctttaggtaccaaggagggag 23908030  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 48624315 - 48624255
Alignment:
Q  221 agcgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggagggag 281  Q
    |||||||| | ||| |||||||||||||| ||||||||||| ||| | |||||||| ||||    
T  48624315 agcgaagcgagaactcaagcttttgaaggattataccaatctttaggtaccaaggaaggag 48624255  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 52137684 - 52137744
Alignment:
Q  221 agcgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggagggag 281  Q
    |||||||| | ||| |||||||||||||| ||||||||||| ||| | |||||||||||||    
T  52137684 agcgaagcgagaactcaagcttttgaaggattataccaatctttaggtaccaaggagggag 52137744  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 51449492 - 51449432
Alignment:
Q  221 agcgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggagggag 281  Q
    |||||||| | ||| |||||||||||| | ||||||||||| ||| | |||||||||||||    
T  51449492 agcgaagcgagaactcaagcttttgaaagattataccaatctttaggtaccaaggagggag 51449432  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 31977161 - 31977219
Alignment:
Q  223 cgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggagggag 281  Q
    |||||||| ||||||| ||||||| || |||||||||||||||   |||||||||||||    
T  31977161 cgaagcaagaacccaaacttttgatggattataccaatccttagaaaccaaggagggag 31977219  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 8179286 - 8179346
Alignment:
Q  221 agcgaagcaaaaacccaagcttttgaagggttataccaatccttatgcaccaaggagggag 281  Q
    |||||||| | ||| |||||||||||||| ||||||||||| ||| | | |||||||||||    
T  8179286 agcgaagcgagaactcaagcttttgaaggattataccaatctttaggtatcaaggagggag 8179346  T

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