View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-18 (Length: 691)
Name: NF1709-Insertion-18
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-18 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0340 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 8 - 691
Target Start/End: Original strand, 50289026 - 50289733
Alignment:
| Q |
8 |
atttcaattctattttgatggattatttaattaagtgaaaatgcagtactctgtcagcatttttgggtttttatttatgaatattaaaactgctatagaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50289026 |
atttcaattctattttgatggattatttaattaagtgaaaatgcagtactctgttagcatttttgggtttttatttatgaatattaaaactgctatagaa |
50289125 |
T |
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| Q |
108 |
ttaagtatatcaattctgctgtttatgatgttgatgcataatgtga---------ttatattccgataattgtgattg----------------aggttg |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
50289126 |
ttaagtatatcaattctgctgtttatgatgttgatgcataatgtgagctgtgtgattatattccgataattgtgattgcttaagtgtttgtttgaggttg |
50289225 |
T |
|
| Q |
183 |
gagtggaggggaaagacttgtgatttgatttagtttggccaaaacataacctgtagggcttgatttagtttgattagcaatttatcattattattgagaa |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50289226 |
gagtggaggggaaagacttgtgatttgatttagtttggccaaaacataacctgtagggcttgatttagtttgattagcaatttatcattattatggagaa |
50289325 |
T |
|
| Q |
283 |
aaactaccttctaaacctcttcggagttctctttttagtacattctttgtgttctttcaaattggggtattcctatggagaaaaataatttcaaatgaaa |
382 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50289326 |
aaactaccttctaaacctcttcggagttctctttt-agtacattctttgtgttctttcaaattggggtattcctatggagaaaaataatttcaaatgaaa |
50289424 |
T |
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| Q |
383 |
gtgagagacctagctttttccttcccttgnnnnnnnaggtgaaaccctattcctttccttattttgctccccattgtccatacagtcccctcatctcttg |
482 |
Q |
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| T |
50289425 |
gtgagagacctagctttctccttcccttgtttttttaggtgaaaccctattcctttccttattttgctcctcattgtccatacagtcccctcatctcttg |
50289524 |
T |
|
| Q |
483 |
tgagtgacggttatatgcatatattgagatacatgtatttttcattcttagcacaatttaacatgttactcggaatcatctcaaataatgaaataaccgt |
582 |
Q |
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| T |
50289525 |
tgagtgacggttatatgcatatattgagatacatgtatgtttcattcttcgcacaatttaacatgttacccggaatcatctcaaataatgaaataaccgt |
50289624 |
T |
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| Q |
583 |
attcttcattgttacctttgtagcagactttcattttgaactgtcaacggttttagtgtatgttgcatttattttgttattaaagttggtcaattttgaa |
682 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50289625 |
attcttcattgttacctttgtagcagactttcattttgaactgtcaacggttttagtgtatgttgcatttattttgttattaaagttggtcaattttgaa |
50289724 |
T |
|
| Q |
683 |
taatattaa |
691 |
Q |
| |
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||||||||| |
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| T |
50289725 |
taatattaa |
50289733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 3404 - 3484
Alignment:
| Q |
25 |
atggattatttaattaagtgaaaatgcagtactctgtcagcatttttgggtttttatttatgaatattaaaactgctatag |
105 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3404 |
atggattatttaattaagagaaaatgcagtactctgttagcatttttgggtttttatttctgaatattaaaactgctatag |
3484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 373 - 628
Target Start/End: Original strand, 5471 - 5716
Alignment:
| Q |
373 |
tcaaatgaaagtgagagacctagctttttccttcccttgnnnnnnnaggtgaaaccctattcctttccttattttgctccccattgtccatacagtcccc |
472 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| | ||||||| |||| ||||| ||||||| |
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| T |
5471 |
tcaaatgaaagtgagagacctagctttctccttccctt-atttttaaggtgac-ccctattcctttc----tcttgctcctcattttccatgaagtcccc |
5564 |
T |
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| Q |
473 |
tc--atctcttgtgagtgacggttatatgcatatattgagatacatgtatttttcattcttagcacaatttaacatgttactcggaatcatctcaaataa |
570 |
Q |
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|| ||| ||| ||||||| |||| ||||||| ||||||||||||||| |||||| |||||||||||||||||||| || | || ||| ||||||| |
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| T |
5565 |
tctcatcccttctgagtgagggttgtatgcatctattgagatacatgt----ttcatttttagcacaatttaacatgtttctggtaagtatcacaaataa |
5660 |
T |
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| Q |
571 |
tgaaataaccgtattcttcattgttacctttgtagcagactttcattttgaactgtca |
628 |
Q |
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|||||| | ||||| ||||| ||||||||| ||| |||||||||||||||||||||| |
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| T |
5661 |
tgaaatca--gtatttttcatagttacctttatagtagactttcattttgaactgtca |
5716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 3614 - 3670
Alignment:
| Q |
198 |
acttgtgatttgatttagtttggccaaaacataacctgtagggcttgatttagtttg |
254 |
Q |
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| T |
3614 |
acttgtgatttgatttagtttggctgaaacataaactgtagggtttgatttagtttg |
3670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 5385 - 5457
Alignment:
| Q |
253 |
tgattagcaatttatcattattattgagaaaaactaccttctaaacctcttcggagttctctttttagtacatt |
326 |
Q |
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|||||||||||||||||||| ||| |||||| | |||| |||||| |||||| |||||||| |||||||||||| |
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| T |
5385 |
tgattagcaatttatcattactatggagaaatattaccctctaaaactcttcagagttctc-ttttagtacatt |
5457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 3513 - 3545
Alignment:
| Q |
112 |
gtatatcaattctgctgtttatgatgttgatgc |
144 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
3513 |
gtatatcaattctgctgtttatgttgttgatgc |
3545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 581 - 628
Target Start/End: Original strand, 39115792 - 39115839
Alignment:
| Q |
581 |
gtattcttcattgttacctttgtagcagactttcattttgaactgtca |
628 |
Q |
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||||| ||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
39115792 |
gtatttttcatagttacctttgtagtagactttcattttgaactgtca |
39115839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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