View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-20 (Length: 538)
Name: NF1709-Insertion-20
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-20 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 8 - 538
Target Start/End: Complemental strand, 51418233 - 51417705
Alignment:
| Q |
8 |
ctgtttctgtgtctagtttcattaatgattagcaatttatgggagagaaagaacagcaaaattgtaacaaaggcaatgggattattggttaagatctgtg |
107 |
Q |
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| T |
51418233 |
ctgtttctgtgtctagtttcattaatgattagcaatttatgggagagaaagaacagcaaaattgtaacaaaggcaatgggattattggttaagatctgtg |
51418134 |
T |
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| Q |
108 |
ttagttttgtgagggaagacttgtgagttatactcctatgaatttaaaggaaagaaaaagttaggacaagggcaaagaaagagagagaatgttggtttga |
207 |
Q |
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| T |
51418133 |
ttagttttgtgagggaagacttgtgagtta--ctcctatgaatttaaaggaaagaaaaagttaggacaagggcaaagaaagagagagaatgttggtttga |
51418036 |
T |
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| Q |
208 |
tttgatgttgctgttttggatattgaagaatattgataggtagctatagtagtgaagtataatcatgacagttttattgtgatcgtccttctttttccat |
307 |
Q |
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| T |
51418035 |
tttgatgttgctgttttggatattgaagaatattgttaggtagctatagtagtgaagtataatcatgacacttttattgtgatcgtccttctttttccat |
51417936 |
T |
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| Q |
308 |
tctttcaatgttattggaactccttttaattaattaatttttctttggcatgctttaaatttgttaattttcgttagttgagacaatttaattaaatgtg |
407 |
Q |
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| T |
51417935 |
tctttctatgttattggaactccttttaattaattaatttttctttggcatgctttaaatttgttaattttcgttagttgagacaatttaattaaatgtg |
51417836 |
T |
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| Q |
408 |
tccttgaacaagttctgtcttggtgctaaagagttcaaactggtataaagaagcttatcggcaattaaaagttagtaaaatgattcgatcgaaattgata |
507 |
Q |
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| T |
51417835 |
tctttgaacaagttctgtcttggtgctaaagagttcaaactggtataaagaagcttatcggcaattaaaagttagtaaaatgattcgatcgaaattgata |
51417736 |
T |
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| Q |
508 |
tcacacaccaaaaaggggtggagactttgtt |
538 |
Q |
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| T |
51417735 |
tcacacaccaaaaaggggtggagactttgtt |
51417705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 256 - 334
Target Start/End: Complemental strand, 51412949 - 51412871
Alignment:
| Q |
256 |
gtagtgaagtataatcatgacagttttattgtgatcgtccttctttttccattctttcaatgttattggaactcctttt |
334 |
Q |
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| T |
51412949 |
gtagtgaactataatcatgacagtttcattgtgcttgtctttctttttccttactttccttgttattggaacttctttt |
51412871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 279 - 538
Target Start/End: Complemental strand, 29323615 - 29323364
Alignment:
| Q |
279 |
ttttattgtgatcgtccttctttttccattctttcaatgttattggaactccttttaattaattaatttttctttggcatgctttaaatttgttaatttt |
378 |
Q |
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| T |
29323615 |
ttttattgtgactgtccttctttttcctttctttctatgttattggaactccttttaattaatttatttttctttggcatgcttt------gttaatttt |
29323522 |
T |
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| Q |
379 |
cgttagttgagacaatttaattaaatgtgtccttgaacaagttctgtcttggtgctaaagagttcaaactggtataaagaagcttatcggcaattaaaag |
478 |
Q |
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| T |
29323521 |
cgttagttga--caatttaattaaatgtgtccttgaacaagttctgtcttggtgctaaagagttcaaagtggtataaagaaacttatcagcaattaaaag |
29323424 |
T |
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| Q |
479 |
ttagtaaaatgattcgatcgaaattgatatcacacaccaaaaaggggtggagactttgtt |
538 |
Q |
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| T |
29323423 |
ttagtaaaatgattcgattgaaattgacttcacacaccaaaaaggggtggagactttgtt |
29323364 |
T |
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