View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709-Insertion-21 (Length: 584)

Name: NF1709-Insertion-21
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709-Insertion-21
NF1709-Insertion-21
[»] chr4 (1 HSPs)
chr4 (8-584)||(4021560-4022136)
[»] scaffold0376 (1 HSPs)
scaffold0376 (348-425)||(5113-5190)


Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 8 - 584
Target Start/End: Complemental strand, 4022136 - 4021560
Alignment:
Q  8 acaccaacatgtggttggtttgcggtagggggaagcttcacttgctgccaaagagtttccttgaccaattgttagtattcatatatagcacttaaatctg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4022136 acaccaacatgtggttggtttgcggtagggggaagcttcacttgctgccaaagagtttccttgaccaattgttagtattcatatatagcacttaaatctg 4022037  T
Q  108 acaatttaaatccttaacccaactcaaatactatgttaaatgaacttggatttttccttaaaatctcccgacaacctgtgtgagactccaatacaactta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4022036 acaatttaaatccttaacccaactcaaatactatgttaaatgaacatggatttttccttaaaatctcccgacaacctgtgtgagactccaatacaactta 4021937  T
Q  208 aataatttggtatatcatctgccaaattaaagagaacagggaactgatcgcataaaggttgatccccaagccatagatctctccaaaacaatgtgttttc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4021936 aataatttggtatatcatctgccaaattaaagagaacagggaactgatcgcataaaggttgattcccaagccatagatctctccaaaacaatgtgttttc 4021837  T
Q  308 acttttcaccatttccgactactcacataacttaatttgtaaaccagtttggttcgacttcacatgcctttccaatagaacataaatatcgccaccataa 407  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4021836 acttttcaccgtttccaactactcacttaacttaatttgtaaaccagtttggttcgacttcacatgcctttccaatagaacataaatatcgccaccataa 4021737  T
Q  408 cgagtctatccttcccgactacacggtatctggacggagcaattttcctgaaactggactgtacctatactttattaacccgaaccaaatagtaccattt 507  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4021736 cgagtctatccttcccgactacacggtatctggatggagcaattttcctgaaactggactgtacctatactttattaacctgaaccaaatagtaccattt 4021637  T
Q  508 tccgcaatgcacctccataaccattttcttcgtaacgttaaatgaaataagtacaagttttttacttcgagtcctcc 584  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4021636 tccgcaatgcacctccataaccattttcttcgtaactttaaatgaaataagtacaagttttttacttcgagtcctcc 4021560  T

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Target: scaffold0376 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 348 - 425
Target Start/End: Complemental strand, 5190 - 5113
Alignment:
Q  348 aaaccagtttggttcgacttcacatgcctttccaatagaacataaatatcgccaccataacgagtctatccttcccga 425  Q
    ||||||||||||||| ||||||||  ||||||| || ||||||||||  ||||||||||||||||||| |||||||||    
T  5190 aaaccagtttggttccacttcacacacctttcctattgaacataaatcacgccaccataacgagtctaaccttcccga 5113  T

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