View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-22 (Length: 589)
Name: NF1709-Insertion-22
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-22 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 30 - 441
Target Start/End: Original strand, 36519917 - 36520324
Alignment:
| Q |
30 |
aatctatgaccataaacataagtttctacgtaccagtactgtttccttagtttctatgaccaaataatgcaattacctggcccactttgcatgcgcacca |
129 |
Q |
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| T |
36519917 |
aatccatgaccataaacataagtttctac----cagtactgtttccttagtttctatgaccaaataatgcaattacctggcccactttgcatgcgcacca |
36520012 |
T |
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| Q |
130 |
tttaaaacattgccattattgctgaagattttttcgttttcatgtcttgaattgaatggttctgaccaaaaattagaaaatgatcacagccatacatatg |
229 |
Q |
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| T |
36520013 |
tttaaaacattgccattattgttgaagattttttcgttttcatgtcttgaattgaatggttctgaccaaaaattagaaaatgatcacagccata----tg |
36520108 |
T |
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| Q |
230 |
tcttaaaagaaaaatggatggtgataggttgcattattcgttctcttggatactatcttatcttgaaagaacgtgtgggtctagggcttcaacacaccac |
329 |
Q |
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| T |
36520109 |
tcttaaaagaaaaatggatggtcataggttgcattattcgttctcttggatactatcttatcttgaaagaacgtgtgggtctagggcttcaacacaccac |
36520208 |
T |
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| Q |
330 |
gtttcgtgggtatttcatttgtgaggatagggaacaagacaacaatttaaaagcagttctgattggattaattccacttac----tactgtcattggagg |
425 |
Q |
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| T |
36520209 |
gtttcgtgggtatttcatttgtgaggatagggaacaagacaacaatttaaaagcagttctgattggattaattccacttactaggtactgtcattggagg |
36520308 |
T |
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| Q |
426 |
atgagtgtgacaaaag |
441 |
Q |
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| T |
36520309 |
atgagtgtgacaaaag |
36520324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 473 - 588
Target Start/End: Original strand, 36520302 - 36520417
Alignment:
| Q |
473 |
ttggaggatgagtgtgacaaaagaaagagtagtttgctatgtgtttatcacacaactccgttttgattccaatccgcaaaagtttaagatctaactaagc |
572 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36520302 |
ttggaggatgagtgtgacaaaagaaagagtagtttgctatgtgtttatcacacaactccgttttgattccaatccgcaaaagtgtaagatctaactaagc |
36520401 |
T |
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| Q |
573 |
agacaacactgtgtta |
588 |
Q |
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| T |
36520402 |
aaacaacactatgtta |
36520417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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