View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-23 (Length: 590)
Name: NF1709-Insertion-23
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-23 |
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| [»] scaffold0189 (2 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 7 - 407
Target Start/End: Complemental strand, 31036 - 30636
Alignment:
| Q |
7 |
atactcttctttcccagtcttaaacttatcactccgaaccttctttggaacatatacctgaaattaacacacacagaacatcaacatccaaacactctac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31036 |
atactcttctttcccagtcttaaacttatcactccgaaccttctttggaacatatacctgaaattaacacacacagaacatcaacatccaaacactctac |
30937 |
T |
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| Q |
107 |
atgtt-atttctatctctcttacttttcatcttctacaactcacccacaaaaaccaaaggataccgtagtaattttaatgtcaaaaatcatttcttgtta |
205 |
Q |
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| T |
30936 |
gtgtttatttctatctctcttacttttcatcttctacaactcacccacaaaaaccaaaggacaccgtagtgattttaatgtcaaaaatcatttcttgtta |
30837 |
T |
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| Q |
206 |
acacataaccatcaaacaggaaccacaaatttcaaatcatactaacccacttttcaaaatgaacatcaaaatacacctgtaattaacacacatgcagttg |
305 |
Q |
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| T |
30836 |
acacataaccatcaaa-aggaaacacaaatttcaaatcatactaacccacttttcaaaatgaacatcaaaatacacctgtaattaacacacatgcagttg |
30738 |
T |
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| Q |
306 |
tgttatttgaactataaaatacaaacaccacctatgtgtttatttccagctctactactatttacacacaaaaaccaaaagacacccaagtaattttcaa |
405 |
Q |
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| T |
30737 |
tgttatttgaactataaaatacaaacaccacctatgtgtttatttccagctctactactatttaaacacaaaaaccaaaagacacccaagtaattttcaa |
30638 |
T |
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| Q |
406 |
gt |
407 |
Q |
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| T |
30637 |
gt |
30636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 493 - 590
Target Start/End: Complemental strand, 30550 - 30453
Alignment:
| Q |
493 |
tttataaaatgagtaacctgaagttgaacatcaactttaactttggaagcataagtcatcctctgtaacctagcatgtctcggaagcatcttcttctc |
590 |
Q |
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| T |
30550 |
tttataaaatgagtaacctgaagttgaacatcaactttaactttggaagcataagtcatcctctgtaacctagcatgtctcggaagcatcttcatctc |
30453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 6e-48; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 48882618 - 48882986
Alignment:
| Q |
11 |
tcttctttcccagtcttaaacttatcactccgaaccttctttggaacatatacctgaaattaacacacacag------------aacatcaacatccaaa |
98 |
Q |
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| T |
48882618 |
tcttctttcccagtcttaaacttatcactccgaaccttcttcataacatatacctgaaattaacacacacagttctgttatctgaacatcaaaatacaaa |
48882717 |
T |
|
| Q |
99 |
cactctacatgttatttctatctctcttacttttca-tcttctacaactcacccacaaaaaccaaaggataccgtagtaattttaatgtcaaaaatcatt |
197 |
Q |
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| T |
48882718 |
cactatgtgt-ttatctctatatctcatactttttaatcttctaca-----cacacaaaaatcaaaggacgc--taacaattttgatgtcaaaaatcatt |
48882809 |
T |
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| Q |
198 |
tcttgttaacacataaccatcaaacaggaaccacaaatttcaaatcatactaacccacttttcaaaatgaacatcaaaatacacc-tgtaatta--acac |
294 |
Q |
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| T |
48882810 |
tcttgttaacaaa--accatcaaataggaactaaaaatttcaaatcatactaacccacatttcaaaatgaacattaaaatacaccttgtaattaacacac |
48882907 |
T |
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| Q |
295 |
acatgcag-ttgtgttatttgaactataaaatacaaacaccacctatgtgtttatttccagctctactactatttacaca |
373 |
Q |
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| T |
48882908 |
acatgcagtttgcgttatttgaacaccaaaaaacaagcacacactatgtgtttattt-tagctcttctactatttacaca |
48882986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 53014002 - 53014076
Alignment:
| Q |
7 |
atactcttctttcccagtcttaaacttatcactccgaaccttctttggaacatatacctgaaattaacacacaca |
81 |
Q |
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|||||| ||||| || |||||||| ||||||||| |||||||||| ||| |||||||||||||||||||||||| |
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| T |
53014002 |
atactcctcttttcctgtcttaaatttatcactctgaaccttcttcggagtatatacctgaaattaacacacaca |
53014076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 517 - 585
Target Start/End: Original strand, 48883162 - 48883230
Alignment:
| Q |
517 |
tgaacatcaactttaactttggaagcataagtcatcctctgtaacctagcatgtctcggaagcatcttc |
585 |
Q |
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| T |
48883162 |
tgaacatcaactttcatcttagaagcataagtcatcctctgcaacctggcatgtctgggaagcatcttc |
48883230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 557
Target Start/End: Original strand, 53014493 - 53014544
Alignment:
| Q |
506 |
taacctgaagttgaacatcaactttaactttggaagcataagtcatcctctg |
557 |
Q |
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| T |
53014493 |
taacctgaacttgaacatcaattttgattttggaagcataggtcatcctctg |
53014544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 36394577 - 36394621
Alignment:
| Q |
110 |
ttatttctatctctcttacttttcatcttctacaactcacccaca |
154 |
Q |
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| T |
36394577 |
ttatctctatctctcttactttttatcttctaccactcacacaca |
36394621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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