View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1709-Insertion-24 (Length: 514)
Name: NF1709-Insertion-24
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-24 |
 | |
|
| [»] chr6 (9 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0249 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 41 - 514
Target Start/End: Complemental strand, 11168908 - 11168431
Alignment:
| Q |
41 |
aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatacnnnn |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11168908 |
aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgttcttcgcacgggttgaatactgtt |
11168809 |
T |
|
| Q |
141 |
nnnnnnnnnnn----aatccttactacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgtt |
236 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11168808 |
tttatttttatttttaatccttactacatgtttgaataagtcaaatgaaactgatttcttaagataaaatccaagtgtcctaagccaatcccaaaatgtt |
11168709 |
T |
|
| Q |
237 |
accgcattaaataagaaacacagccaaatagtgcacatattatgtaatctaaacaaatatacatagactgaataatacaaatcctcatatttgttaatta |
336 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11168708 |
accgcactagataagaaacacagccaaatagtgcacatattatgtaatctaaacaaatatacatagactgaataatacaaatcctcatatttgttaatta |
11168609 |
T |
|
| Q |
337 |
acatcatcatgatcatactaaataacttgagctccgctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11168608 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
11168509 |
T |
|
| Q |
437 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagtgatcgcattgattta |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11168508 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaaactcagtgatcgcattgattta |
11168431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 41 - 491
Target Start/End: Complemental strand, 11207648 - 11207198
Alignment:
| Q |
41 |
aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatacnnnn |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11207648 |
aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgaattgaatactgtt |
11207549 |
T |
|
| Q |
141 |
nnnnnnnnnnnaatccttactacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttaccg |
240 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11207548 |
ttttcttttttaatccttactatatgtttgaataagttaaatgaaactgatttcttaagataaactccaagtgtactaagccaatcccaaaatgttaccg |
11207449 |
T |
|
| Q |
241 |
cattaaataagaaacacagccaaatagtgcacatattatgtaatctaaacaaatatacatagactgaataatacaaatcctcatatttgttaattaacat |
340 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11207448 |
cactaaataaaaaacacagccaaatagtgcacatattatgtaatctaaacaaatatacatagactgaataatacaaatcctcatatttgttaattaacat |
11207349 |
T |
|
| Q |
341 |
catcatgatcatactaaataacttgagctccgctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttttagt |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11207348 |
catcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttttagt |
11207249 |
T |
|
| Q |
441 |
gtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattca |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11207248 |
gtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattca |
11207198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 2627704 - 2627783
Alignment:
| Q |
55 |
agagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaat |
134 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2627704 |
agagagatgttcaaattacataacattgctattcttcgtaaatttgagaacgaaggtcgcgtgcttcgcacgggttgaat |
2627783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 22978377 - 22978456
Alignment:
| Q |
55 |
agagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaat |
134 |
Q |
| |
|
|||| |||||||||||||| |||||| || |||||||||| ||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
22978377 |
agagagatgttcaaattacataacattgttgttcttcgtaaatttgagaacgaaggtcgtgtgcttcgcacgggttgaat |
22978456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 23810026 - 23809947
Alignment:
| Q |
55 |
agagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaat |
134 |
Q |
| |
|
|||| |||||||||||||| |||||| || |||||||||| ||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
23810026 |
agagagatgttcaaattacataacattgttgttcttcgtaaatttgagaacgaaggtcgtgtgcttcgcacgggttgaat |
23809947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 8743687 - 8743728
Alignment:
| Q |
387 |
aattaacagtcacaggctccaatataattcataaattgcttt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8743687 |
aattaacagtcacaggctccaatataattcataaattgcttt |
8743728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 8746751 - 8746816
Alignment:
| Q |
49 |
tctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgc |
114 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| | ||||||||||| ||||||||| |||||||| |
|
|
| T |
8746751 |
tctaaaggagggatgttcaaattatggaacattgtcattcttcgtaaatttgagaacaaaggtcgc |
8746816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 34218797 - 34218722
Alignment:
| Q |
60 |
gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaata |
135 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||| ||| || || |||||||||||| | |||||||| ||||||||| |
|
|
| T |
34218797 |
gatgttcaaattacggaatattgtaattcttcataaattcgaaaacgaaggtcgcatgcttcgcacaggttgaata |
34218722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 1363207 - 1363154
Alignment:
| Q |
48 |
ctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttga |
101 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
1363207 |
ctctaaaggagatatgttcaaattacggaacattgttattcttcgtaaatttga |
1363154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 41 - 514
Target Start/End: Complemental strand, 13624303 - 13623834
Alignment:
| Q |
41 |
aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatacnnnn |
140 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13624303 |
aaaatttctctaaaggagagatgttcaaattacggaacattcctattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatactgtt |
13624204 |
T |
|
| Q |
141 |
nnnnnnnnnnnaatccttactacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttaccg |
240 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13624203 |
tttttta----aatccttactatatgtttgaataagtcaaatgaaactgatttcctaagataaaatccaagtgtactaagccaatcccaaaatgttaccg |
13624108 |
T |
|
| Q |
241 |
cattaaataagaaacacagccaaatagtgcacatattatgtaatctaaacaaatatacatagactgaataatacaaatcctcatatttgttaattaacat |
340 |
Q |
| |
|
|| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13624107 |
cactaaataaggaacacagccaaatagtgcaaatattatgtaatctaaacaaatatacatagactgaataatacaaatgctcatatttgttaattaacat |
13624008 |
T |
|
| Q |
341 |
catcatgatcatactaaataacttgagctccgctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttttagt |
440 |
Q |
| |
|
||||||||||||||| |||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13624007 |
catcatgatcatactcaataacttgacctcctctacactacatgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttttagt |
13623908 |
T |
|
| Q |
441 |
gtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagtgatcgcattgattta |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13623907 |
gtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagcgatcgcattgattta |
13623834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 41 - 251
Target Start/End: Original strand, 52037441 - 52037652
Alignment:
| Q |
41 |
aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatacnnnn |
140 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52037441 |
aaaattcctctaaaggagagatgttcaaattacggaacattgctattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatactgtt |
52037540 |
T |
|
| Q |
141 |
nnnnnnnnnnnaa-tccttactacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttacc |
239 |
Q |
| |
|
|| ||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52037541 |
tttttttttaaaaatccttactatatgtttgaataagtcaaatgaaactgatttcctaagataaaatccaagtgtactaagccaatcccaaaatgttacg |
52037640 |
T |
|
| Q |
240 |
gcattaaataag |
251 |
Q |
| |
|
||| |||||||| |
|
|
| T |
52037641 |
gcactaaataag |
52037652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 253 - 514
Target Start/End: Complemental strand, 19582 - 19321
Alignment:
| Q |
253 |
aacacagccaaatagtgcacatattatgtaatctaaacaaatatacatagactgaataatacaaatcctcatatttgttaattaacatcatcatgatcat |
352 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19582 |
aacacagccaaatagtgcaaatattatgtaatctaaacaaatatacatagactgaataatacaaatcctcatatttgttaattaacatcatcatgatcat |
19483 |
T |
|
| Q |
353 |
actaaataacttgagctccgctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttttagtgtatcaaaaaac |
452 |
Q |
| |
|
||| ||||||||||||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19482 |
actcaataacttgagctccactacactacaccagaattaacagtcacaggctccgatataattcataaattgcttttggttttttagtgtatcaaaaaac |
19383 |
T |
|
| Q |
453 |
aacatttatgaaggattgacagtgacaaatccttattcaagctcagtgatcgcattgattta |
514 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19382 |
aaaatttatgaaggattgacagtgacaaatccttattcaagctcagcaatcgcattgattta |
19321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 253 - 476
Target Start/End: Complemental strand, 41050650 - 41050427
Alignment:
| Q |
253 |
aacacagccaaatagtgcacatattatgtaatctaaacaaatatacatagactgaataatacaaatcctcatatttgttaattaacatcatcatgatcat |
352 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41050650 |
aacacagccaaatagtgcaaatattatgtaatctaaacaaatatacatagactgaataatacaaatcctcatatttgttaattaacatcatcatgatcat |
41050551 |
T |
|
| Q |
353 |
actaaataacttgagctccgctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttttagtgtatcaaaaaac |
452 |
Q |
| |
|
||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41050550 |
actcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcataaattgcttttggttttttagtgtatcacaaaac |
41050451 |
T |
|
| Q |
453 |
aacatttatgaaggattgacagtg |
476 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
41050450 |
aacatttatgaaggattgacagtg |
41050427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 60 - 251
Target Start/End: Complemental strand, 41053776 - 41053588
Alignment:
| Q |
60 |
gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatacnnnnnnnnnnnnnnnaatcctta |
159 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41053776 |
gatgttcaaattacggaacattgttattctttgtaattttaagaacgaaggtcgcgtccttcgcacgggttgaatactgtttttttgga---aatcctta |
41053680 |
T |
|
| Q |
160 |
ctacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttaccgcattaaataag |
251 |
Q |
| |
|
||| |||| | |||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41053679 |
ctatatgtctgaataagacaaatgaaaccgatttcctaagataaaatccaagtgtactaagccaatcccaaaatgttaccgcactaaataag |
41053588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 42614306 - 42614362
Alignment:
| Q |
60 |
gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgt |
116 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| || |||||||||||||||||||| |
|
|
| T |
42614306 |
gatgttcaaattacgaaacattgttattcttcgaaaatttgagaacgaaggtcgcgt |
42614362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 9878399 - 9878440
Alignment:
| Q |
60 |
gatgttcaaattacggaacattcttattcttcgtaattttga |
101 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
9878399 |
gatgttcaaatttcggaacattgttattcttcgtaaatttga |
9878440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 253 - 476
Target Start/End: Original strand, 21889744 - 21889967
Alignment:
| Q |
253 |
aacacagccaaatagtgcacatattatgtaatctaaacaaatatacatagactgaataatacaaatcctcatatttgttaattaacatcatcatgatcat |
352 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21889744 |
aacacagccaaatagtgcaaatattatgtaatctaaacaaatatacatagactgaataatacaaatcctcatatttgttaattaacatcatcatgatcat |
21889843 |
T |
|
| Q |
353 |
actaaataacttgagctccgctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttttagtgtatcaaaaaac |
452 |
Q |
| |
|
||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21889844 |
actcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcataaattgcttttggttttttagtgtatctcaaaac |
21889943 |
T |
|
| Q |
453 |
aacatttatgaaggattgacagtg |
476 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
21889944 |
aacatttatgaaggattgacagtg |
21889967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 37477961 - 37478060
Alignment:
| Q |
152 |
aatccttactacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttaccgcattaaataag |
251 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
37477961 |
aatccttactatatgtttgaataagtcaaatgaaactgatttcctaagataaaatccaaatgtactaagtcaatcccaaaatgttactgcagtaaataag |
37478060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 25731121 - 25731051
Alignment:
| Q |
41 |
aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggt |
111 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||||||| ||||| | | ||||||||| ||||||||||||||| |
|
|
| T |
25731121 |
aaaattgctctaaaggagagatgttcaaattacgcgacattgtcagtcttcgtaaatttgagaacgaaggt |
25731051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 33097893 - 33097950
Alignment:
| Q |
48 |
ctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaac |
105 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| | ||||||||||| ||| ||||| |
|
|
| T |
33097893 |
ctctaaaggagagatgttcaaattacggaacattgtcattcttcgtaaatttaagaac |
33097950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 21895132 - 21895079
Alignment:
| Q |
48 |
ctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttga |
101 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
21895132 |
ctctaaaggagatatgttcaaattacggaacattactattcttcgtaaatttga |
21895079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 25350167 - 25350208
Alignment:
| Q |
63 |
gttcaaattacggaacattcttattcttcgtaattttgagaa |
104 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
25350167 |
gttcaaattacggaacattgtcattcttcgtaaatttgagaa |
25350208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 25355861 - 25355902
Alignment:
| Q |
63 |
gttcaaattacggaacattcttattcttcgtaattttgagaa |
104 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
25355861 |
gttcaaattacggaacattgtcattcttcgtaaatttgagaa |
25355902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 48 - 251
Target Start/End: Original strand, 1685106 - 1685311
Alignment:
| Q |
48 |
ctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatacnnnnnnnnnnn |
147 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1685106 |
ctctaaaggagagatgttcaaattacggaacattgctattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatactgttttttttt |
1685205 |
T |
|
| Q |
148 |
nnnnaa--tccttactacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttaccgcatta |
245 |
Q |
| |
|
|| ||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
1685206 |
taaaaaaatccttactatatgtttgaataagtcaaatgaaactgatttcctaagataaaatccaagtgtactaagccaatcccaaaatgttacggcacta |
1685305 |
T |
|
| Q |
246 |
aataag |
251 |
Q |
| |
|
|||||| |
|
|
| T |
1685306 |
aataag |
1685311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 39954665 - 39954566
Alignment:
| Q |
152 |
aatccttactacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttaccgcattaaataag |
251 |
Q |
| |
|
|||| ||| ||||||||| |||||| |||||||||| |||| || |||||||| |||||||||||| |||||| |||||||||| ||| |||||||| |
|
|
| T |
39954665 |
aatcattaatacatgtttgaataagacaaatgaaaccaatttaccaatataaaatctaagtgtactaagtcaatcctaaaatgttacagcactaaataag |
39954566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 4805609 - 4805642
Alignment:
| Q |
253 |
aacacagccaaatagtgcacatattatgtaatct |
286 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
4805609 |
aacacagccaaatagtgcaaatattatgtaatct |
4805642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 255 - 437
Target Start/End: Complemental strand, 1975047 - 1974854
Alignment:
| Q |
255 |
cacagccaaatagtgcacatattatgtaatctaaacaaatatacatagactgaataatacaaatcctcatatttgttaattaacatcatcatgatcatac |
354 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
1975047 |
cacagccaaatagtgcaaatattatgcaatctaaacaaatatacatagactgaataatacaaatcctcatatttgttaattaatatcatcatgatcatgc |
1974948 |
T |
|
| Q |
355 |
taaataac----ttgagctccgctacactacac--gaa-----aattaacagtcacaggctccaatataattcataaattgcttttggtttttt |
437 |
Q |
| |
|
| |||||| || |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
1974947 |
tcaataacttaattaagctcctctacactacaccagaattaagaattaacagtcacaggctccaatataattcataaattgctttggatttttt |
1974854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 273 - 418
Target Start/End: Complemental strand, 56540595 - 56540450
Alignment:
| Q |
273 |
atattatgtaatctaaacaaatatacatagactgaataatacaaatcctcatatttgttaattaacatcatcatgatcatactaaataacttgagctccg |
372 |
Q |
| |
|
||||||| ||||||||||||||||||| | | |||| ||| |||||||| ||||||||||||||| |||||||||||||| || || ||||| | |||| |
|
|
| T |
56540595 |
atattatttaatctaaacaaatatacacataatgaacaatgcaaatcctgatatttgttaattaatatcatcatgatcatgctcaacaacttaaactcct |
56540496 |
T |
|
| Q |
373 |
ctacactacacgaaaattaacagtcacaggctccaatataattcat |
418 |
Q |
| |
|
||| || ||| | |||||||| ||||||| |||||||||| |||| |
|
|
| T |
56540495 |
ttactcttcaccagaattaacattcacagggtccaatataactcat |
56540450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 1694882 - 1694788
Alignment:
| Q |
41 |
aaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaata |
135 |
Q |
| |
|
|||||| ||||||| ||| |||||||||| |||||||||| |||||||||||| |||||||||||||||| | | |||| ||| ||||||||| |
|
|
| T |
1694882 |
aaaattgctctaaaggagatatgttcaaatcacggaacattgctattcttcgtaaatttgagaacgaaggtcccatgcttcacactggttgaata |
1694788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 5483006 - 5482931
Alignment:
| Q |
60 |
gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaata |
135 |
Q |
| |
|
|||||||||||||||||| ||| | |||||| ||| |||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
5483006 |
gatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtcacatgcttcgcacgggttgaata |
5482931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 1967484 - 1967538
Alignment:
| Q |
51 |
taaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaac |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||||||||||| || |||||| |
|
|
| T |
1967484 |
taaaagagaaatgttcaaattacggaacattgtcattcttcgtaaattagagaac |
1967538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 36678788 - 36678862
Alignment:
| Q |
48 |
ctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgca |
124 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||| |||| ||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
36678788 |
ctctaaaagag--atgtttaaattacaaaacattgctatttttcgtaaatttgagaacgaaggtcgtgtgcttcgca |
36678862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 60 - 251
Target Start/End: Complemental strand, 44800627 - 44800441
Alignment:
| Q |
60 |
gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaatacnnnnnnnnnnnnnnnaatcctta |
159 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||| ||| |||||||| |
|
|
| T |
44800627 |
gatgttcaaattacgaaacattgctattcttcgtaaatttgagaacgaaggttgcgtccttcgcacggattgagtactgttttttta-----aatcctta |
44800533 |
T |
|
| Q |
160 |
ctacatgtttaaataagtcaaatgaaactgatttcttaagataaaatccaagtgtactaagccaatcccaaaatgttaccgcattaaataag |
251 |
Q |
| |
|
||| ||||| |||||| |||||||||| ||||| ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
44800532 |
ctatctgtttgaataagacaaatgaaaccgatttactaagataaaatccaagtgtactaagtcaattccaaaatgttaccgcactaaataag |
44800441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 45003731 - 45003806
Alignment:
| Q |
60 |
gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaata |
135 |
Q |
| |
|
|||||||||||||||||| ||| | |||||| ||| |||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
45003731 |
gatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtcacatgcttcgcacgggttgaata |
45003806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 25123500 - 25123551
Alignment:
| Q |
60 |
gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggt |
111 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
25123500 |
gatgttcaaattacggaacattgtcattcttcgtaaacttgagaacgaaggt |
25123551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 15084357 - 15084410
Alignment:
| Q |
48 |
ctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttga |
101 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
15084357 |
ctctaaaggagatatgttcaaattacggaacattgctattcttcgtaaatttga |
15084410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 2680305 - 2680380
Alignment:
| Q |
60 |
gatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgcgtccttcgcacgggttgaata |
135 |
Q |
| |
|
|||||||||||||||||| ||| | |||||| ||| |||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
2680305 |
gatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtcacatgcttcgcacgggttgaata |
2680380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 24847957 - 24848022
Alignment:
| Q |
49 |
tctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgc |
114 |
Q |
| |
|
|||||| ||| ||||||||||||| |||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
24847957 |
tctaaaggagagatgttcaaattataaaacattgtcattcttcgtaaatttgagaacgaaggtcgc |
24848022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 28940772 - 28940835
Alignment:
| Q |
49 |
tctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtc |
112 |
Q |
| |
|
|||||| ||| |||||||||||||| ||||||| | ||||||||||| |||||||| |||||| |
|
|
| T |
28940772 |
tctaaaggagagatgttcaaattacagaacattgtcattcttcgtaaacttgagaacaaaggtc |
28940835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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