View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709-Insertion-25 (Length: 537)

Name: NF1709-Insertion-25
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709-Insertion-25
NF1709-Insertion-25
[»] chr6 (11 HSPs)
chr6 (8-537)||(4267298-4267826)
chr6 (290-537)||(4256744-4256989)
chr6 (7-112)||(4260869-4260974)
chr6 (299-383)||(4260380-4260464)
chr6 (343-515)||(4621953-4622125)
chr6 (412-502)||(4260296-4260385)
chr6 (225-291)||(4260515-4260581)
chr6 (239-291)||(4257045-4257097)
chr6 (373-463)||(4299953-4300044)
chr6 (94-134)||(4257140-4257179)
chr6 (236-291)||(4289140-4289195)
[»] chr5 (4 HSPs)
chr5 (76-228)||(24102622-24102775)
chr5 (324-464)||(24102821-24102961)
chr5 (312-464)||(24109251-24109408)
chr5 (237-274)||(24041261-24041298)
[»] chr4 (1 HSPs)
chr4 (43-152)||(37578028-37578134)


Alignment Details
Target: chr6 (Bit Score: 433; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 8 - 537
Target Start/End: Complemental strand, 4267826 - 4267298
Alignment:
Q  8 gccaacaaattaaccttgtacattttggctctatcacacataaaataccttctcttttttgtcaatgtactacatcaaaaagttggacatttttcttgaa 107  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4267826 gccaacagattaacctagtacattttggctctatcacacataaaataccttctcttttgtgtcaatgtactacatcaaaaagttggacatttttcttgaa 4267727  T
Q  108 ttaattcccccttttccaagtaaagtatgccacaattagttctttactagctgaacaatattgctgctggttatgatcatcaatagtaatgaaatcactc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4267726 ttaattcccccttttccaagtaaagtatgccacaattagttctctactagctgaacaatattgctgctggttatgatcatcaatagtaatgaaatcactc 4267627  T
Q  208 actatgatatcagataaaccaggtccatggtaaataatgtgcatgtttctgccactgttatgtacccatatacagattcttaaaatacaattatatgcca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  4267626 actatgatatcagataaaccaggtccatggtaaataatgtgcatgtttctgccactgttatgtacccctatacagattcttaaaatacaattatatgcta 4267527  T
Q  308 tttgtatatatgaaaatgaaagaaaaataacactagtaactgaatttcatacaattacatgaaaaattatttatattgaaccaaaatcacataataagtc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||    
T  4267526 tttgtatatatgaaaatgaaagaaaaataacactagtaactgaatttcatacaattatatgaaacattatttatattgaaccaaaatcacataataaatc 4267427  T
Q  408 atacttatatggtttacatttcaaatataactagcacctcacactaaatgcatcatannnnnnnacaataaaacaaattcaagaggagatgacacaacta 507  Q
    |||| || |||| ||  |||| ||||||||| |||||||||||||||||||||||||       |||||||||||||||||||||||||| |||||||||    
T  4267426 atac-taaatggcttttattttaaatataacaagcacctcacactaaatgcatcatattttttgacaataaaacaaattcaagaggagattacacaacta 4267328  T
Q  508 caattcctagaataaataacttcaatctag 537  Q
    ||||||||||||||||| ||||||||||||    
T  4267327 caattcctagaataaatgacttcaatctag 4267298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 290 - 537
Target Start/End: Complemental strand, 4256989 - 4256744
Alignment:
Q  290 aaatacaattatatgccatttgtatatatgaaaatgaaagaaaaataacactagtaactgaatttcatacaattacatgaaaaattatttatattgaacc 389  Q
    |||||| || |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  4256989 aaataccatcatattccatttgtatatatgcaaatgaaagaaaaataacactagtaactgaatttcatacaattatatgaaacattatttatattgaacc 4256890  T
Q  390 aaaatcacataataagtcatacttatatggtttacatttcaaatataactagcacctcacactaaatgcatcatannnnnnnacaataaaacaaattcaa 489  Q
    |||||||||||||||||||||| || |||| ||  |||| ||||||||| |||||||||||||||||||||||||       ||||||||||||||||||    
T  4256889 aaaatcacataataagtcatac-taaatggctttaattt-aaatataacaagcacctcacactaaatgcatcatattttttgacaataaaacaaattcaa 4256792  T
Q  490 gaggagatgacacaactacaattcctagaataaataacttcaatctag 537  Q
    |||||||| ||||||| ||| ||| |||||||||| |||  |||||||    
T  4256791 gaggagattacacaaccacatttcatagaataaattactataatctag 4256744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 4260974 - 4260869
Alignment:
Q  7 agccaacaaattaaccttgtacattttggctctatcacacataaaataccttctcttttttgtcaatgtactacatcaaaaagttggacatttttcttga 106  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  4260974 agccaacaaattaaccttgtacattttggctctatgacacataaaataccttctcttttgtgtcaatgtactacatcaaaaagttggacagttttcttga 4260875  T
Q  107 attaat 112  Q
    ||||||    
T  4260874 attaat 4260869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 299 - 383
Target Start/End: Complemental strand, 4260464 - 4260380
Alignment:
Q  299 tatatgccatttgtatatatgaaaatgaaagaaaaataacactagtaactgaatttcatacaattacatgaaaaattatttatat 383  Q
    |||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||||||||    
T  4260464 tatatgtcatttgtatatatgcaaatgaaataaaaataacactagtaactgaatttcatacaattatatgagacattatttatat 4260380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 343 - 515
Target Start/End: Original strand, 4621953 - 4622125
Alignment:
Q  343 gtaactgaatttcatacaattacatgaaaaattatttatattgaaccaaaatcacataataagtcatacttatatggtttacatttcaaatataactagc 442  Q
    |||| ||||||||||||||||| ||| |  ||||||| |||||||| ||||| ||||||||||| | | |||||||| ||| |||| |||||||||||||    
T  4621953 gtaaatgaatttcatacaattatatgtatcattatttctattgaactaaaatgacataataagttacatttatatggcttagattttaaatataactagc 4622052  T
Q  443 acctcacactaaatgcatcat--annnnnnnacaataaaacaaattcaagaggagatgacacaactacaattcct 515  Q
    ||||||||||  |||||||||          ||||||||| ||||||||||| |||||||||||| ||| |||||    
T  4622053 acctcacact--atgcatcattatttttttgacaataaaataaattcaagagaagatgacacaaccacatttcct 4622125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 412 - 502
Target Start/End: Complemental strand, 4260385 - 4260296
Alignment:
Q  412 ttatatggtttacatttcaaatataactagcacctcacactaaatgcatcatannnnnnnacaataaaacaaattcaagaggagatgacac 502  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||       |||||||||||||||||||||||||| ||||    
T  4260385 ttatatggtttacattttaaatataacaagcacctca-actaaatgcatcttatttttttacaataaaacaaattcaagaggagattacac 4260296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 4260581 - 4260515
Alignment:
Q  225 accaggtccatggtaaataatgtgcatgtttctgccactgttatgtacccatatacagattcttaaa 291  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||| | | ||||||||||||    
T  4260581 accaggtccatagtaaataatgtgcatgtttctgccacaattatgtacccctgtgcagattcttaaa 4260515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 4257097 - 4257045
Alignment:
Q  239 aaataatgtgcatgtttctgccactgttatgtacccatatacagattcttaaa 291  Q
    ||||||||||||||||||||||||| |||||||||| ||| ||||||||||||    
T  4257097 aaataatgtgcatgtttctgccactattatgtacccctatgcagattcttaaa 4257045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 463
Target Start/End: Complemental strand, 4300044 - 4299953
Alignment:
Q  373 attatttatattgaaccaaaatcacataataagtcatacttatatggtttac-atttcaaatataactagcacctcacactaaatgcatcat 463  Q
    ||||||||||||||||  |||| ||||||||| ||||| |||||||| |||| |||| ||||||||| | || ||| ||||| |||||||||    
T  4300044 attatttatattgaactcaaataacataataaatcatatttatatggcttacaatttaaaatataaccatcagctctcactatatgcatcat 4299953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 4257179 - 4257140
Alignment:
Q  94 acatttttcttgaattaattcccccttttccaagtaaagta 134  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  4257179 acatttttcttgaattaatt-ccccttttccaagtaaagta 4257140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 4289195 - 4289140
Alignment:
Q  236 ggtaaataatgtgcatgtttctgccactgttatgtacccatatacagattcttaaa 291  Q
    |||||||||||||||||||||||||| | |||| ||| | ||| ||||||||||||    
T  4289195 ggtaaataatgtgcatgtttctgccattattatttactcctatgcagattcttaaa 4289140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 76 - 228
Target Start/End: Original strand, 24102622 - 24102775
Alignment:
Q  76 actacatcaaaaagttgg-acatttttcttgaattaattcccccttttccaagtaaagtatgccacaattagttctttactagctgaacaatattgctgc 174  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  24102622 actacatcaaaaagttgggacatttttcttgaattaattcccccttttgcaagtaaagtatgccacaattagttctctactagctgaataatattgctgc 24102721  T
Q  175 tggttatgatcatcaatagtaatgaaatcactcactatgatatcagataaacca 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24102722 tggttatgatcatcaatagtaatgaaatcactcactatgatatcagataaacca 24102775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 324 - 464
Target Start/End: Original strand, 24102821 - 24102961
Alignment:
Q  324 tgaaagaaaaataacactagtaactgaatttcatacaattacatgaaaaattatttatattgaaccaaaatcacataataagtcatacttatatggttta 423  Q
    ||||||||||||||||||||||| |||||| |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24102821 tgaaagaaaaataacactagtaattgaattccatacaattatacgaaacattatttatattgaaccaaaatcacataataagtcatacttatatggttta 24102920  T
Q  424 catttcaaatataactagcacctcacactaaatgcatcata 464  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  24102921 cattttaaatagaactagcacctcacactaaatgcatcata 24102961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 312 - 464
Target Start/End: Original strand, 24109251 - 24109408
Alignment:
Q  312 tatatatgaaaatgaaagaaaaataacactagtaactgaatttcatacaattacatgaaaaattatttatattgaacca-----aaatcacataataagt 406  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||| | ||| |||||| ||||||||| |||||| |     ||||||||||||||||    
T  24109251 tatatatgcaaatgaaacaaaaataacactagtaactgaatttcataaagttatatgaaacattatttatgttgaactaaaattaaatcacataataagt 24109350  T
Q  407 catacttatatggtttacatttcaaatataactagcacctcacactaaatgcatcata 464  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||||||| |||||||    
T  24109351 catacttatatggcttacattttaaatataaccagcacctcacactaaatacatcata 24109408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 24041261 - 24041298
Alignment:
Q  237 gtaaataatgtgcatgtttctgccactgttatgtaccc 274  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  24041261 gtaaataatgtgcatgtttctgccactattatgtaccc 24041298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 37578028 - 37578134
Alignment:
Q  43 acacataaaataccttctcttttttgtcaatgtactacatcaaaaagttggacatttttcttgaattaattcccccttttccaagtaaagtatgccacaa 142  Q
    ||||||||||||| ||||||| |  |||||||||||||| ||||||||||||| ||| ||||||||||||| ||||   |||||||||| ||||||||||    
T  37578028 acacataaaatacattctcttgt--gtcaatgtactacagcaaaaagttggacttttctcttgaattaatt-ccccacatccaagtaaattatgccacaa 37578124  T
Q  143 ttagttcttt 152  Q
    ||| ||||||    
T  37578125 ttatttcttt 37578134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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