View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-26 (Length: 452)
Name: NF1709-Insertion-26
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-26 |
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| [»] scaffold0662 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 30506976 - 30506821
Alignment:
| Q |
15 |
tactgtacatcccttgtttttctattttcataaaaaagccctagca----gcaacagcatccatttctctgtctattcaccaacataataaaggaatatt |
110 |
Q |
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| T |
30506976 |
tactgtacatcccttgtttttctattttcataaaaaagccctagcaagtagcaacagcatccatttctctgtctattcaccaacataataaaggaatatt |
30506877 |
T |
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| Q |
111 |
aatattgccattaatataagtgatgaaagtctgagtttgcaccacccttttaaggc |
166 |
Q |
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| T |
30506876 |
aatattgccattaatataagtgatgaaagtctgagtttgcaccacccttttaaggc |
30506821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 332 - 444
Target Start/End: Complemental strand, 30506656 - 30506544
Alignment:
| Q |
332 |
cttaaaagttgttacaaaatagttttacaaatatcattattcaaaatcctttttcttcttccgtattacttattttgacaacttttcagttgtccaacac |
431 |
Q |
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| T |
30506656 |
cttaaaagttgttacaaaatggttttacagctatcattattcaaagtcctttttcttcttccgtattacttattttgacaacttttcagttgtccaacac |
30506557 |
T |
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| Q |
432 |
ttaatatttattc |
444 |
Q |
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| T |
30506556 |
tcaatatttattc |
30506544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 30506788 - 30506718
Alignment:
| Q |
199 |
ccacataattcaaaggaaaattgactgtacatttgaacaattacatctcttatactttatattttgtttctac |
271 |
Q |
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| T |
30506788 |
ccacataattcaaaagaaaattgactgtac-tttgaacaattacatctcttatac-ttatattttgtttctac |
30506718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 370
Target Start/End: Original strand, 37848559 - 37848594
Alignment:
| Q |
335 |
aaaagttgttacaaaatagttttacaaatatcatta |
370 |
Q |
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| T |
37848559 |
aaaagttgttacaaaatagttatacaaatatcatta |
37848594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 42225799 - 42225842
Alignment:
| Q |
335 |
aaaagttgttacaaaatagttttacaaatatcattattcaaaat |
378 |
Q |
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| T |
42225799 |
aaaagttgttacaaaatggttttacaaatatcatttctcaaaat |
42225842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 369
Target Start/End: Complemental strand, 42815442 - 42815408
Alignment:
| Q |
335 |
aaaagttgttacaaaatagttttacaaatatcatt |
369 |
Q |
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| T |
42815442 |
aaaagttgttacaaaatagttgtacaaatatcatt |
42815408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 6290498 - 6290466
Alignment:
| Q |
337 |
aagttgttacaaaatagttttacaaatatcatt |
369 |
Q |
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| T |
6290498 |
aagttgttacaaaatagttgtacaaatatcatt |
6290466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 47014979 - 47014943
Alignment:
| Q |
333 |
ttaaaagttgttacaaaatagttttacaaatatcatt |
369 |
Q |
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| T |
47014979 |
ttaaaagttgtcacaaaatagttgtacaaatatcatt |
47014943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 42640881 - 42640840
Alignment:
| Q |
335 |
aaaagttgttacaaaatagttttacaaatatcattattcaaa |
376 |
Q |
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| T |
42640881 |
aaaagttgttagaaaatagttgtacaaatatcatttttcaaa |
42640840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 369
Target Start/End: Complemental strand, 1118 - 1082
Alignment:
| Q |
333 |
ttaaaagttgttacaaaatagttttacaaatatcatt |
369 |
Q |
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| T |
1118 |
ttaaaagttgtcacaaaatagttgtacaaatatcatt |
1082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 7867742 - 7867778
Alignment:
| Q |
333 |
ttaaaagttgttacaaaatagttttacaaatatcatt |
369 |
Q |
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| T |
7867742 |
ttaaaagttgtcacaaaatagttgtacaaatatcatt |
7867778 |
T |
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