View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-27 (Length: 463)
Name: NF1709-Insertion-27
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-27 |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Original strand, 6371223 - 6371618
Alignment:
| Q |
8 |
cctaaatgctcttctataaccatggtacatggttaaatcagggacattttctaagagacaataatgacatccaacaattttttgtttctcatagaatacc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6371223 |
cctaaatgctcttctataaccatggtacatggttaaatcagggacattttctaagagacaataatgacatccaacaattttttgtttctcatagaatacc |
6371322 |
T |
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| Q |
108 |
attgatcttgcaaaccaatgtcctccattgagaataacaaagtcaaaatcttcaatttgagttatccaattttcatctggctcatcgatgtaaagattga |
207 |
Q |
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| T |
6371323 |
attgatcttgcaaaccaatgtcctccattgagaataacaaagtcaaaatcttcaatttgagttatccaattttcatctggctcatcgatgtaaagattga |
6371422 |
T |
|
| Q |
208 |
atagtccagttgaacttggaccttttaaatctgannnnnnngatcttaccaaaaaaggtgtccaaaaagaggccattgtgaaattgtagcttgggtagtt |
307 |
Q |
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| T |
6371423 |
atagtccagttgaacttggaccttttaaatctgatttttttgatcttaccaaaaaaggtgtccaaaaagaggccattgtgaaattgtagcttgggtagtt |
6371522 |
T |
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| Q |
308 |
ccacctcatgaaataattattttgtgagtgtgatacaactacgggccattccacctgaaagcattaaagattaaacaaaaagatgcaattttgtgt |
403 |
Q |
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| T |
6371523 |
ccacctcatgaaataattattttgtgagtgtgatacaactacgggctattccacctgaaagtattaaagattaaacaaaaagatgcaattttgtgt |
6371618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 402
Target Start/End: Original strand, 6364582 - 6364976
Alignment:
| Q |
8 |
cctaaatgctcttctataaccatggtacatggttaaatcagggacattttctaagagacaataatgacatccaacaattttttgtttctcatagaatacc |
107 |
Q |
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| T |
6364582 |
cctaaatgctcttctataaccatggtacatggttaaatcagggacattttctaagagacaataatgacatccaacaattttttgtttctcatagaatacc |
6364681 |
T |
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| Q |
108 |
attgatcttgcaaaccaatgtcctccattgagaataacaaagtcaaaatcttcaatttgagttatccaattttcatctggctcatcgatgtaaagattga |
207 |
Q |
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| T |
6364682 |
attgatcttgtaaaccaatgtcctccattgagaataacatagttaaaatcttcaatttgagttatccaattttcatctggctcatcaatgtaaagatcga |
6364781 |
T |
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| Q |
208 |
atagtccagttgaacttggaccttttaaatctgannnnnnngatcttaccaaaaaaggtgtccaaaaagaggccattgtgaaattgtagcttgggtagtt |
307 |
Q |
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| T |
6364782 |
agagtccagttgaacctggaccttttaaatctgattcttttgatcttaccaaatggggtgtccaaaaagaggccattgtgaaattgtaggttgggtagtg |
6364881 |
T |
|
| Q |
308 |
ccacctcatgaaataattattttgtgagtgtgatacaactacgggccattccacctgaaagcattaaagattaaacaaaaagatgcaattttgtg |
402 |
Q |
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| T |
6364882 |
ccacctcatgaaataatcattttgtgagtgtgatacaactacgggccattccacctgaaagtaataaagattaatcaaaaagatgaaattttgtg |
6364976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 2324 - 2707
Alignment:
| Q |
19 |
ttctataaccatggtacatggttaaatcagggacattttctaagagacaataatgacatccaacaattttttgtttctcatagaataccattgatcttgc |
118 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2324 |
ttcnataaccatggtacatggttaaatcagggacattttctaagagacaataatgacatccaacaattttttgtttctcatagaataccattgatcttgt |
2423 |
T |
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| Q |
119 |
aaaccaatgtcctccattgagaataacaaagtcaaaatcttcaatttgagttatccaattttcatctggctcatcgatgtaaagattgaatagtccagtt |
218 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |
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| T |
2424 |
aaaccaatgtcctccattgagaataacatagttaaaatcttcaatttgagttatccaattttcatctggctcatcaatgtaaagatcgaagagtccagtt |
2523 |
T |
|
| Q |
219 |
gaacttggaccttttaaatctgannnnnnngatcttaccaaaaaaggtgtccaaaaagaggccattgtgaaattgtagcttgggtagttccacctcatga |
318 |
Q |
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| T |
2524 |
gaacctggaccttttaaatctgattcttttgatcttaccaaatggggtgtccaaaaagaggccattgtgaaattgtaggttgggtagtgccacctcatga |
2623 |
T |
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| Q |
319 |
aataattattttgtgagtgtgatacaactacgggccattccacctgaaagcattaaagattaaacaaaaagatgcaattttgtg |
402 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||| |
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| T |
2624 |
aataatcattttgtgagtgtgatacaactacgggccattccacctgaaagtaataaagattaatcaaaaagatgaaattttgtg |
2707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 6554555 - 6554731
Alignment:
| Q |
8 |
cctaaatgctcttctataaccatggtacatggttaaatcagggacattttctaagagacaataatgacatccaacaattttttgtttctcatagaatacc |
107 |
Q |
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|||||| ||| ||||||| |||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6554555 |
cctaaaagcttttctatagccataatacattgttaaatcagtgacattttctaagagacaataatgacatccaacaatttttcctttctcatagaatacc |
6554654 |
T |
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| Q |
108 |
attgatcttgca-aaccaatgtcctccattgagaataacaaagtcaaaatcttcaatttgagttatccaattttcatc |
184 |
Q |
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| T |
6554655 |
attg-gcttgtagaaccaatgtcctccattgattatgacatagtcaaaatcttcaatttgtgatgtccatttttcatc |
6554731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 363
Target Start/End: Original strand, 6554814 - 6554910
Alignment:
| Q |
267 |
gtccaaaaagaggccattgtgaaattgtagcttgggtagttccacctcatgaaataattattttgtgagtgtgatacaactacgggccattccacct |
363 |
Q |
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|||||| ||| ||||| ||||||||||| |||||||| ||||| ||||||||||| | || || || || ||||||| ||| ||||||||||||| |
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| T |
6554814 |
gtccaataagcagccatggtgaaattgtaacttgggtatttccatctcatgaaatagtcatcttttgtgtatgatacatctataggccattccacct |
6554910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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