View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-28 (Length: 323)
Name: NF1709-Insertion-28
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-28 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 323
Target Start/End: Original strand, 36208675 - 36208990
Alignment:
| Q |
8 |
ccatcttctccccaagcaagtttgaattttttaataacatcatccgtaagaagctcaacccctttattctttgatgactgataagccgaccttgatctta |
107 |
Q |
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| T |
36208675 |
ccatcttctccccaagcaagtttgaatttttcaataacatcatcagtaagaagctcaacccctttattctttgatgactgataagctgaccttgatctta |
36208774 |
T |
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| Q |
108 |
tataattcaagaagtcatccaaatccatcacagtctcggcctcaaattcaaacggtcctgtatgatcaactccttccacaggatcaaatggaaaatcaat |
207 |
Q |
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| T |
36208775 |
tataattcaagaagtcatccaaatccatcacagtctcggcctcaaactcaaacggtcctgtatgatcaaccccttccacaggatcaaatggaaaatcaat |
36208874 |
T |
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| Q |
208 |
gtttctataattatcctcaagtaattcacgtcttgagtcccaataaggttttgcatcaaaagaatacaacttatcatgtaaagcaccaactgcatcatta |
307 |
Q |
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| T |
36208875 |
gtttctataattatcctcaagtaattcacgtcttgagtcccaataaggttttgcatcaaacgaatacaacttatcatgtaaagcaccaactgcatcatta |
36208974 |
T |
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| Q |
308 |
actcttggtgaagtgt |
323 |
Q |
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| T |
36208975 |
actcttggtgaagtgt |
36208990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 36205588 - 36205900
Alignment:
| Q |
8 |
ccatcttctccccaagcaagtttgaattttttaataacatcatccgtaagaagctcaacccctttattctttgatgactgataagccgaccttgatctta |
107 |
Q |
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| T |
36205588 |
ccatcttcaccacgagcaagtttaaaattttcaataacatcctccttaagcagttcaaccccgttattctttgatgtctgatatgatgaccttgatctta |
36205687 |
T |
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| Q |
108 |
tataattcaagaagtcatccaaatccatcacagtctcggcctcaaattcaaacggtcctgtatgatcaactccttccacaggatcaaatggaaaatcaat |
207 |
Q |
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| T |
36205688 |
tataagtcaagaaatcatcaaaatccatcacagtctctgccacaaactcaaatggtcctgtatgatcaactccttcaacgggcccaaatggaaaatcaac |
36205787 |
T |
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| Q |
208 |
gtttctataattatcctcaagtaattcacgtc-ttgagtcccaataaggttttgcatcaaaagaatacaacttatcatgtaaagcaccaactgcatcatt |
306 |
Q |
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| T |
36205788 |
ggtttcataattttcctcaactaattcacgtctttgggtcccaatgaggttttgcatcaaaagaatataccttatcatgcaaagcatcaactgcatcatt |
36205887 |
T |
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| Q |
307 |
aactcttggtgaa |
319 |
Q |
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| T |
36205888 |
aactcttggtgaa |
36205900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 35405031 - 35404773
Alignment:
| Q |
8 |
ccatcttctccccaagcaagtttgaattttttaataacatcatccgtaagaagctcaacccctttattctttgatgactgataagccgaccttgatctta |
107 |
Q |
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| T |
35405031 |
ccatcttcaccccaagcaagcttaaatttttcaactacgtcctcaccaagaagctccacacccttctcctttgctgtctgataagctgaccatgatttta |
35404932 |
T |
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| Q |
108 |
tataattcaagaagtcatccaaatccatcacagtctcggcctcaaattcaaacggtcctgtatgatcaactccttccacaggatcaaatggaaaatcaat |
207 |
Q |
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| T |
35404931 |
tataagttaacaaaccatcaaaactcatcaatatctctgtcacaaactcaaatggtcctctatgatcaactccatccaccgcctcaaatggaaaatcaat |
35404832 |
T |
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| Q |
208 |
gtttctataattatcctcaagtaattcacgtcttgagtcccaataaggttttgcatcaa |
266 |
Q |
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| T |
35404831 |
gcttctataattgtcctcaactaatttacacgctgaatcccaataaggttttgaatcaa |
35404773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 35399960 - 35399894
Alignment:
| Q |
150 |
caaattcaaacggtcctgtatgatcaactccttccacaggatcaaatggaaaatcaatgtttctata |
216 |
Q |
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| T |
35399960 |
caaactcaaatggtcctgtatgatcaactccatccactgcctgaaatggaaaatcaatgcttctata |
35399894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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