View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709-Insertion-29 (Length: 356)

Name: NF1709-Insertion-29
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709-Insertion-29
NF1709-Insertion-29
[»] chr8 (6 HSPs)
chr8 (4-356)||(13850803-13851153)
chr8 (5-122)||(13892108-13892225)
chr8 (177-356)||(13869810-13869999)
chr8 (5-121)||(13869606-13869722)
chr8 (126-244)||(13892260-13892379)
chr8 (206-238)||(2302700-2302732)
[»] chr3 (1 HSPs)
chr3 (214-251)||(27016927-27016964)
[»] chr6 (5 HSPs)
chr6 (194-282)||(2732924-2733014)
chr6 (209-248)||(31694720-31694759)
chr6 (209-276)||(9194430-9194499)
chr6 (194-251)||(9074119-9074176)
chr6 (215-251)||(2457237-2457273)
[»] chr5 (3 HSPs)
chr5 (208-246)||(4787938-4787976)
chr5 (194-239)||(40990990-40991035)
chr5 (207-247)||(41399566-41399606)
[»] chr1 (2 HSPs)
chr1 (203-245)||(6025962-6026004)
chr1 (204-282)||(52517057-52517137)
[»] chr7 (1 HSPs)
chr7 (214-270)||(30408257-30408314)


Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 4 - 356
Target Start/End: Original strand, 13850803 - 13851153
Alignment:
Q  4 aacatacttctgtttcctgatgaaatgattatagtaaaatacatgttatggacttttggtagacatgcataaacatgttattattctgacttcgtcttaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  13850803 aacatacttctgtttcctgatgaaatgattatagtaaaatacatgttatggacttttggtagacatgcataaacatgttattattctgact--gtcttaa 13850900  T
Q  104 aacatgattagaaaagcgcatatcagtgttctcgatcacagattgcgcaaaatagggttagtttaattttcattatgcaacaaaaatgccatagcacctc 203  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13850901 aacataattagaaaagcgcatatcagtgttgtcgatcacagattgcgcaaaatagggttagtttaattttcattatgcaacaaaaatgccatagcacctc 13851000  T
Q  204 tattgccactatttgataacattttgtactaaatagtatatcacaaaaatagcaacttgctcaaattcctctacgctattcaacaatattgaaatacgca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13851001 tattgccactatttgataacattttgtactaaatagtatatcacaaaaatagcaacttgctcaaattcctctacgctattcaacaatattgaaatacgca 13851100  T
Q  304 cataagaaaaaagaatatgacaattaatatagcaaatatcaaactcacatcag 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13851101 cataagaaaaaagaatatgacaattaatatagcaaatatcaaactcacatcag 13851153  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 13892108 - 13892225
Alignment:
Q  5 acatacttctgtttcctgatgaaatgattatagtaaaatacatgttatggacttttggtagacatgcataaacatgttattattctgacttcgtcttaaa 104  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| ||||| |||    
T  13892108 acatacttctgtttcctgatgaaatgaatatagtaaaatacatgttatggacttttggcagacatgcataaacatgttacttttctgactccgtctcaaa 13892207  T
Q  105 acatgattagaaaagcgc 122  Q
    ||| |||||  |||||||    
T  13892208 acacgattatgaaagcgc 13892225  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 177 - 356
Target Start/End: Original strand, 13869810 - 13869999
Alignment:
Q  177 tatgcaacaaaaatgccatagcacctctattgccactatttgataacattttgtactaaatagtatatcacaaaaatagcaacttgctca--------aa 268  Q
    |||||||||||  ||| |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||  |        ||    
T  13869810 tatgcaacaaaggtgctatagcacctctattgccactgtttgacaacattttgtactaaatagcatatcacaaaaatagcaacttgcgtatcgtgaacaa 13869909  T
Q  269 ttcctctac--gctattcaacaatattgaaatacgcacataagaaaaaagaatatgacaattaatatagcaaatatcaaactcacatcag 356  Q
    |   | |||  |||||||||||| || ||||||  ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||    
T  13869910 tgtgtataccagctattcaacaacatagaaataatcacataagaaaaaagaatatgacaattaaaatagcaaatataaaactgacatcag 13869999  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 13869606 - 13869722
Alignment:
Q  5 acatacttctgtttcctgatgaaatgattatagtaaaatacatgttatggacttttggtagacatgcataaacatgttattattctgacttcgtcttaaa 104  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||||||||||| |||||| ||||||||||||||||| | |||||||| | ||| |||    
T  13869606 acatacttctgtttcctgatgaaatgtatatagtaaaatatatgttatggacttctggtagtcatgcataaacatgttacttttctgactccatctcaaa 13869705  T
Q  105 acatgattagaaaagcg 121  Q
    ||| |||||| ||||||    
T  13869706 acacgattaggaaagcg 13869722  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 244
Target Start/End: Original strand, 13892260 - 13892379
Alignment:
Q  126 tcagtgttctcgatcacagattgcgcaaaatagg-gttagtttaattttcattatgcaacaaaaatgccatagcacctctattgccactatttgataaca 224  Q
    |||||||| || ||| |||||||| ||||||||  ||| |||||| | ||  |||||||||||| ||| |||||||||||| ||| ||||||||| ||||    
T  13892260 tcagtgttatcaatcgcagattgcacaaaatagcagttggtttaaatctcgctatgcaacaaaagtgctatagcacctctactgctactatttgacaaca 13892359  T
Q  225 ttttgtactaaatagtatat 244  Q
    |||||||||||| |||||||    
T  13892360 ttttgtactaaagagtatat 13892379  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 2302700 - 2302732
Alignment:
Q  206 ttgccactatttgataacattttgtactaaata 238  Q
    ||||| |||||||||||||||||||||||||||    
T  2302700 ttgcctctatttgataacattttgtactaaata 2302732  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 27016927 - 27016964
Alignment:
Q  214 atttgataacattttgtactaaatagtatatcacaaaa 251  Q
    |||||| |||||||||||||||||||||||||||||||    
T  27016927 atttgacaacattttgtactaaatagtatatcacaaaa 27016964  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 2733014 - 2732924
Alignment:
Q  194 atagcacctctattgccactatttgataacattttgtactaaatagtatatcacaaa--aatagcaacttgctcaaattcctctacgctat 282  Q
    ||||| ||||||| ||  |||||||| ||||||||||||||||||| ||||| ||||  |||||| | ||| ||||||| | |||||||||    
T  2733014 atagcgcctctatagctgctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactacgctat 2732924  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 248
Target Start/End: Original strand, 31694720 - 31694759
Alignment:
Q  209 ccactatttgataacattttgtactaaatagtatatcaca 248  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  31694720 ccactatttgaaaacattttgtactaaatagtgtatcaca 31694759  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 9194430 - 9194499
Alignment:
Q  209 ccactatttgataacattttgtactaaata--gtatatcacaaaaatagcaacttgctcaaattcctcta 276  Q
    ||||||||||| ||||||||||||||||||  ||||| || || |||||||| ||| || ||||||||||    
T  9194430 ccactatttgacaacattttgtactaaataccgtatagcagaacaatagcaatttgttccaattcctcta 9194499  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 9074119 - 9074176
Alignment:
Q  194 atagcacctctattgccactatttgataacattttgtactaaatagtatatcacaaaa 251  Q
    ||||| || |||| ||| |||||||||||||||||||| |||||||| |||| |||||    
T  9074119 atagcgccgctatagcctctatttgataacattttgtagtaaatagtgtatcgcaaaa 9074176  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 2457273 - 2457237
Alignment:
Q  215 tttgataacattttgtactaaatagtatatcacaaaa 251  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  2457273 tttgacaacattttgtactaaatagcatatcacaaaa 2457237  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 4787976 - 4787938
Alignment:
Q  208 gccactatttgataacattttgtactaaatagtatatca 246  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  4787976 gccactatttgacaacattttgtactaaatagtgtatca 4787938  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 40991035 - 40990990
Alignment:
Q  194 atagcacctctattgccactatttgataacattttgtactaaatag 239  Q
    |||||||| ||||  ||||||||||| |||||||||||||||||||    
T  40991035 atagcaccactatacccactatttgacaacattttgtactaaatag 40990990  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 41399566 - 41399606
Alignment:
Q  207 tgccactatttgataacattttgtactaaatagtatatcac 247  Q
    |||| |||||||| |||||||||||||||||||| ||||||    
T  41399566 tgccgctatttgacaacattttgtactaaatagtgtatcac 41399606  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 6025962 - 6026004
Alignment:
Q  203 ctattgccactatttgataacattttgtactaaatagtatatc 245  Q
    |||| |||||||||||| ||||||||||||||||||| |||||    
T  6025962 ctatagccactatttgacaacattttgtactaaatagcatatc 6026004  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 52517057 - 52517137
Alignment:
Q  204 tattgccactatttgataacattttgtactaaatagtatatcacaaa--aatagcaacttgctcaaattcctctacgctat 282  Q
    ||||||| |||||||| || |||||||||||||||  ||||||||||  |||||||| | | ||||||||| |||| ||||    
T  52517057 tattgccgctatttgacaatattttgtactaaataacatatcacaaaataatagcaattagttcaaattccactactctat 52517137  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 30408257 - 30408314
Alignment:
Q  214 atttgataacattttgtactaaatagtatatcacaaa-aatagcaacttgctcaaatt 270  Q
    |||||| ||||||||||||||| ||| |||||||||| |||||| ||||| |||||||    
T  30408257 atttgaaaacattttgtactaattagaatatcacaaacaatagccacttgttcaaatt 30408314  T

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