View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709-Insertion-3 (Length: 832)

Name: NF1709-Insertion-3
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709-Insertion-3
NF1709-Insertion-3
[»] chr8 (6 HSPs)
chr8 (7-174)||(32472991-32473155)
chr8 (535-685)||(32473493-32473645)
chr8 (346-474)||(32473303-32473431)
chr8 (166-324)||(32473119-32473278)
chr8 (105-150)||(6253396-6253441)
chr8 (106-147)||(44119344-44119385)
[»] chr1 (9 HSPs)
chr1 (7-174)||(21761346-21761513)
chr1 (686-832)||(51276494-51276643)
chr1 (57-127)||(21761936-21762006)
chr1 (166-270)||(21761277-21761382)
chr1 (686-773)||(52113335-52113422)
chr1 (108-174)||(37770263-37770329)
chr1 (685-773)||(7102405-7102493)
chr1 (106-147)||(27109019-27109060)
chr1 (81-118)||(37770721-37770758)
[»] chr5 (9 HSPs)
chr5 (7-174)||(36759040-36759207)
chr5 (692-773)||(38495313-38495394)
chr5 (89-174)||(36758472-36758559)
chr5 (684-759)||(17341021-17341096)
chr5 (685-759)||(10513179-10513253)
chr5 (184-268)||(36759189-36759274)
chr5 (107-155)||(37280499-37280547)
chr5 (106-147)||(5123786-5123827)
chr5 (106-174)||(7362672-7362741)
[»] scaffold0146 (4 HSPs)
scaffold0146 (9-174)||(29825-29995)
scaffold0146 (9-174)||(32167-32337)
scaffold0146 (42-150)||(24526-24634)
scaffold0146 (166-267)||(32301-32402)
[»] chr4 (6 HSPs)
chr4 (685-832)||(44229813-44229963)
chr4 (42-147)||(43035864-43035969)
chr4 (7-146)||(43036340-43036482)
chr4 (166-270)||(43036446-43036551)
chr4 (687-759)||(26348892-26348964)
chr4 (216-270)||(2333850-2333904)
[»] chr3 (4 HSPs)
chr3 (685-832)||(12408488-12408638)
chr3 (685-773)||(47692454-47692542)
chr3 (685-759)||(20809289-20809363)
chr3 (103-148)||(16869252-16869297)
[»] chr2 (8 HSPs)
chr2 (87-176)||(42683533-42683622)
chr2 (109-174)||(4424860-4424925)
chr2 (166-234)||(4425914-4425983)
chr2 (135-172)||(4425949-4425986)
chr2 (166-246)||(41474697-41474776)
chr2 (188-270)||(34456935-34457018)
chr2 (160-270)||(42683466-42683577)
chr2 (109-146)||(18815711-18815748)
[»] chr7 (4 HSPs)
chr7 (686-773)||(15074409-15074496)
chr7 (216-271)||(38653080-38653135)
chr7 (716-767)||(45430424-45430475)
chr7 (216-273)||(18792656-18792713)
[»] chr6 (1 HSPs)
chr6 (686-773)||(10519543-10519630)
[»] scaffold0039 (1 HSPs)
scaffold0039 (107-154)||(106851-106898)
[»] scaffold1903 (1 HSPs)
scaffold1903 (89-126)||(1086-1123)
[»] scaffold0184 (1 HSPs)
scaffold0184 (219-260)||(28678-28719)
[»] scaffold0078 (1 HSPs)
scaffold0078 (219-260)||(44125-44166)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 1e-71; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 32472991 - 32473155
Alignment:
Q  7 acttcaagcatcaggtaagaattttatttgggtagtgaagaaaagcagcgaagatggagaagaagaattgttgtgtagtgtgaattgaagaaaagatttc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  32472991 acttcaagcatcaggtaagaattttatttgggtagtgaagaaaagcagcgaagatggagaagaag---tgttgtgtagtgtgaattgaagaaaagatttc 32473087  T
Q  107 agcggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaact 174  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||    
T  32473088 agcggtagttaactaccactggggccagcggtagttaactgttgtcgggtcctcagcggtagttaact 32473155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 535 - 685
Target Start/End: Original strand, 32473493 - 32473645
Alignment:
Q  535 ggggaggtagtagtatgt--atgttggtcaccacatatattaactcatttatgaactctttccttaaagagtgttgttttcatcctttggaatgtcaact 632  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32473493 ggggaggcagtagtatgtgtatgttggtcaccacatatattaactcatttatgaactctttccttaaagagtgttgttttgatcctttggaatgtcaact 32473592  T
Q  633 tggtttttagactctgttcacttcattctttcttaaaatttgtattaatttta 685  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32473593 tggattttagactctgttcacttcattctttcttaaaatttgtattaatttta 32473645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 346 - 474
Target Start/End: Original strand, 32473303 - 32473431
Alignment:
Q  346 gaggatgtagtagtatattaaagtcgatatataatgcatttgattgaccaagacatatatgattataattccttataaagtgttccagagtgcaaaagtt 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32473303 gaggatgtagtagtatattaaagtcgatatataatgcatttgattgaccaagacatatctgattataattccttataaagtgttccagagtgcaaaagtt 32473402  T
Q  446 ttttcacttttcaggacatagtatatggg 474  Q
    |||||||||||||||||||||||||||||    
T  32473403 ttttcacttttcaggacatagtatatggg 32473431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 166 - 324
Target Start/End: Original strand, 32473119 - 32473278
Alignment:
Q  166 tagttaactgttgtcgggtcctcaacgatagttgactactactgaggacatt-aagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggca 264  Q
    |||||||||||||||||||||||| || ||||| ||||||||| ||| |||| |||||||||||||||||||||||||| |||||||||| |||||  ||    
T  32473119 tagttaactgttgtcgggtcctcagcggtagttaactactacttagggcatttaagtattttacttgtgtcgatgtgaagttttttatgtcaaaaaaaca 32473218  T
Q  265 attttcaatatttaattagaatagatatgcaacgctaggatgtagtagcatatttcttat 324  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32473219 attttcaatatttaatgagaatagatatgcaacgctaggatgtagtagcatatttcttat 32473278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 6253441 - 6253396
Alignment:
Q  105 tcagcggtagttaactaccgctggggccaacggtagttaactgttg 150  Q
    |||||||||||||||||||| |||| ||| ||| ||||||||||||    
T  6253441 tcagcggtagttaactaccgttgggtccagcggcagttaactgttg 6253396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 44119344 - 44119385
Alignment:
Q  106 cagcggtagttaactaccgctggggccaacggtagttaactg 147  Q
    ||||| |||||||||||||||||| ||||||| |||||||||    
T  44119344 cagcgatagttaactaccgctgggaccaacggcagttaactg 44119385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 2e-70; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 21761513 - 21761346
Alignment:
Q  7 acttcaagcatcaggtaagaattttatttgggtagtgaagaaaagcagcgaagatggagaagaagaattgttgtgtagtgtgaattgaagaaaagatttc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21761513 acttcaagcatcaggtaagaattttatttgggtagtgaagaaaagcaacgaagatggagaagaagaagtgttgtgtagtgtgaattgaagaaaagatttc 21761414  T
Q  107 agcggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaact 174  Q
    |||||||| |||| ||| ||||||||| ||||||||||||| |||||||||||||||| |||||||||    
T  21761413 agcggtagataaccaccactggggccagcggtagttaactgatgtcgggtcctcaacggtagttaact 21761346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 686 - 832
Target Start/End: Complemental strand, 51276643 - 51276494
Alignment:
Q  686 gagaaatgataaatggacatacaatttgtgacacaaatacaacactatgggcaaaacggtaattttggtgtgaagtatagggttaa-ttggtaattcgac 784  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  51276643 gagaaatgataaatggacacacaatttgtgacacaaatacaacactatgggcaaaacggtaattttgatgtgaagtatagggttaatttggtaattcgac 51276544  T
Q  785 ttcattcttccca-tttctttgtctttctcc-tcctctcttcccgacctc 832  Q
    ||||||||||||| |||||||||||||| || || |||||||||||||||    
T  51276543 ttcattcttcccattttctttgtctttccccttcttctcttcccgacctc 51276494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 21761936 - 21762006
Alignment:
Q  57 aagatggagaagaagaattgttgtgtagtgtgaattgaagaaaagatttcagcggtagttaactaccgctg 127  Q
    ||||||||||||||||| || | |||||||||||||||||||||||||||||||| |||||||||||||||    
T  21761936 aagatggagaagaagaaatgctttgtagtgtgaattgaagaaaagatttcagcggcagttaactaccgctg 21762006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 270
Target Start/End: Complemental strand, 21761382 - 21761277
Alignment:
Q  166 tagttaactgttgtcgggtcctcaacgatagttgactactactgaggacattaag-tattttacttgtgtcgatgtgaaattttttatgtgaaaaaggca 264  Q
    |||||||||| |||||||||||||||| ||||| |||||  ||  || |||| || |||||||||| |||| ||||||| |||||||||| ||||| |||    
T  21761382 tagttaactgatgtcgggtcctcaacggtagttaactaccgctaggggcatttagatattttacttttgtcaatgtgaagttttttatgtcaaaaaagca 21761283  T
Q  265 attttc 270  Q
    ||||||    
T  21761282 attttc 21761277  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 686 - 773
Target Start/End: Original strand, 52113335 - 52113422
Alignment:
Q  686 gagaaatgataaatggacatacaatttgtgacacaaatacaacactatgggcaaaacggtaattttggtgtgaagtatagggttaatt 773  Q
    |||||||||||||| |||| |||||||  |||||| ||||||||| ||||| ||||| |||||||| ||||||| || |||| |||||    
T  52113335 gagaaatgataaatagacacacaattttagacacatatacaacaccatgggtaaaacagtaattttagtgtgaactagaggggtaatt 52113422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 174
Target Start/End: Complemental strand, 37770329 - 37770263
Alignment:
Q  108 gcggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaact 174  Q
    ||||||||||||||||| || || || ||||||||||||| | |||| |||||||||||||||||||    
T  37770329 gcggtagttaactaccgttgaggtcagcggtagttaactgatatcggatcctcaacgatagttaact 37770263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 685 - 773
Target Start/End: Original strand, 7102405 - 7102493
Alignment:
Q  685 agagaaatgataaatggacatacaatttgtgacacaaatacaacactatgggcaaaacggtaattttggtgtgaagtatagggttaatt 773  Q
    |||| |||||||| | |||| | |||||||||| |||| ||||||| ||||  ||||| |||||||||||||||| || |||| |||||    
T  7102405 agagtaatgataagtagacacataatttgtgacgcaaaaacaacaccatggataaaacagtaattttggtgtgaaatacagggataatt 7102493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 27109019 - 27109060
Alignment:
Q  106 cagcggtagttaactaccgctggggccaacggtagttaactg 147  Q
    |||||||||||||||||||||||| ||| ||| |||||||||    
T  27109019 cagcggtagttaactaccgctgggaccagcggcagttaactg 27109060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 37770721 - 37770758
Alignment:
Q  81 gtagtgtgaattgaagaaaagatttcagcggtagttaa 118  Q
    |||||||||||||||||||||||||||| || ||||||    
T  37770721 gtagtgtgaattgaagaaaagatttcagtggcagttaa 37770758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 6e-61; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 36759040 - 36759207
Alignment:
Q  7 acttcaagcatcaggtaagaattttatttgggtagtgaagaaaagcagcgaagatggagaagaagaattgttgtgtagtgtgaattgaagaaaagatttc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  36759040 acttcaagcatcaggtaagaattttatttgggtagtgaagaaaagcaacgaagatggagaagaagaagtgttgtgtagtgtgaattgaagaaaagatttt 36759139  T
Q  107 agcggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaact 174  Q
    |||||| ||||||||| |||||||||| ||||||||||| | |  ||| ||||||||| |||||||||    
T  36759140 agcggtggttaactactgctggggccagcggtagttaacggctaccggatcctcaacggtagttaact 36759207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 692 - 773
Target Start/End: Original strand, 38495313 - 38495394
Alignment:
Q  692 tgataaatggacatacaatttgtgacacaaatacaacactatgggcaaaacggtaattttggtgtgaagtatagggttaatt 773  Q
    |||||||| |||| |||||||  |||||| ||||||||| ||||||||||| |||||||||||||||| || |||| |||||    
T  38495313 tgataaatagacacacaattttagacacatatacaacaccatgggcaaaacagtaattttggtgtgaactagaggggtaatt 38495394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 36758559 - 36758472
Alignment:
Q  89 aattgaagaaaagatttcagcggtagttaactaccgctggggc--caacggtagttaactgttgtcgggtcctcaacgatagttaact 174  Q
    ||||||||||| || |||||||||||||||||||||||||| |  |||||||||||||||   | ||||||||||||  |||||||||    
T  36758559 aattgaagaaatgaattcagcggtagttaactaccgctgggtcctcaacggtagttaactaccgccgggtcctcaacagtagttaact 36758472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 684 - 759
Target Start/End: Original strand, 17341021 - 17341096
Alignment:
Q  684 tagagaaatgataaatggacatacaatttgtgacacaaatacaacactatgggcaaaacggtaattttggtgtgaa 759  Q
    |||||||||||||| | |||| |||||||  |||||||||||||||| ||||||||||   |||||||||||||||    
T  17341021 tagagaaatgataagtagacacacaattttggacacaaatacaacaccatgggcaaaataataattttggtgtgaa 17341096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 685 - 759
Target Start/End: Complemental strand, 10513253 - 10513179
Alignment:
Q  685 agagaaatgataaatggacatacaatttgtgacacaaatacaacactatgggcaaaacggtaattttggtgtgaa 759  Q
    ||||||||||||| | |||| || ||||  |||||||||||||||| |||||||||||  |||||||||||||||    
T  10513253 agagaaatgataagtagacacactattttggacacaaatacaacaccatgggcaaaacaataattttggtgtgaa 10513179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 36759189 - 36759274
Alignment:
Q  184 tcctcaacgatagttgactactactgaggacattaag-tattttacttgtgtcgatgtgaaattttttatgtgaaaaaggcaattt 268  Q
    ||||||||| ||||| |||||  ||| || |||| || ||||||||||||||| ||||||| |||||||||| ||||| |||||||    
T  36759189 tcctcaacggtagttaactaccgctgggggcattcaggtattttacttgtgtcaatgtgaagttttttatgtcaaaaaagcaattt 36759274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 37280547 - 37280499
Alignment:
Q  107 agcggtagttaactaccgctggggccaacggtagttaactgttgtcggg 155  Q
    |||||||||||||||||| | |||||| |||||||||||| ||||||||    
T  37280547 agcggtagttaactaccgtttgggccagcggtagttaactattgtcggg 37280499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 5123827 - 5123786
Alignment:
Q  106 cagcggtagttaactaccgctggggccaacggtagttaactg 147  Q
    ||||||||||||||||||| | || |||||||||||||||||    
T  5123827 cagcggtagttaactaccgtttggaccaacggtagttaactg 5123786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 7362672 - 7362741
Alignment:
Q  106 cagcggtagttaactaccgctggggccaacggtagttaactgttgtcgg-gtcctcaacgatagttaact 174  Q
    |||||| ||||||||||||||| ||||| ||| | ||||||| ||||||  ||||||||| |||||||||    
T  7362672 cagcggcagttaactaccgctgaggccagcggcacttaactgatgtcggcttcctcaacggtagttaact 7362741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 95; Significance: 5e-46; HSPs: 4)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 29825 - 29995
Alignment:
Q  9 ttcaagcatcaggtaagaattttatttgggtagtgaagaaaagcagcgaagatggagaagaagaattgttgtgtagt-----gtgaattgaagaaaagat 103  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||     ||||||| |||||||||     
T  29825 ttcaagcatcatgtaagaattttatttgggtagtgaagaaaagcaacgaagatggagaagaagaagtgttgtgtagtgtgaagtgaattcaagaaaagaa 29924  T
Q  104 ttcagcggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaact 174  Q
    ||||||||||||||||||||| | || | | ||||||||||||  || ||||||||||||| |||||||||    
T  29925 ttcagcggtagttaactaccgttaggactagcggtagttaactactgccgggtcctcaacggtagttaact 29995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 32167 - 32337
Alignment:
Q  9 ttcaagcatcaggtaagaattttatttgggtagtgaagaaaagcagcgaagatggagaagaagaattgttgtgtagt-----gtgaattgaagaaaagat 103  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||     ||||||| |||||||||     
T  32167 ttcaagcatcatgtaagaattttatttgggtagtgaagaaaagcaacgaagatggagaagaagaagtgttgtgtagtgtgaagtgaattcaagaaaagaa 32266  T
Q  104 ttcagcggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaact 174  Q
    ||||||||||||||||||||| | || | | ||||||||||||  || ||||||||||||| |||||||||    
T  32267 ttcagcggtagttaactaccgttaggactagcggtagttaactactgccgggtcctcaacggtagttaact 32337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 24634 - 24526
Alignment:
Q  42 tgaagaaaagcagcgaagatggagaagaagaattgttgtgtagtgtgaattgaagaaaagatttcagcggtagttaactaccgctggggccaacggtagt 141  Q
    |||||||||| | | ||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||  ||| ||| |||    
T  24634 tgaagaaaagtaacaaagatggagaagaagaagtgctgtgtagtgtgaattgaagaaaagatttcagcggcagttaactaccgctggcaccagcggcagt 24535  T
Q  142 taactgttg 150  Q
    |||||||||    
T  24534 taactgttg 24526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 267
Target Start/End: Original strand, 32301 - 32402
Alignment:
Q  166 tagttaactgttgtcgggtcctcaacgatagttgactactactgaggacatt-aagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggca 264  Q
    |||||||||  || ||||||||||||| ||||| |||||  ||| || |||| ||||||||||||||||||  |||| || ||||||||| ||||| |||    
T  32301 tagttaactactgccgggtcctcaacggtagttaactaccgctgggggcatttaagtattttacttgtgtcattgtg-aagtttttatgtcaaaaaagca 32399  T
Q  265 att 267  Q
    |||    
T  32400 att 32402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 7e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 685 - 832
Target Start/End: Complemental strand, 44229963 - 44229813
Alignment:
Q  685 agagaaatgataaatggacatacaatttgtgacacaaatacaacactatgggcaaaacggtaattttggtgtgaagtatagggttaat-tggtaattcga 783  Q
    |||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||  |||||||||||  |||||||| |    
T  44229963 agagaaatgataaatggacacacaatttgagacacaaatacaacaccatgggcaaaacagtaattttggtgtgaaccatagggttaatggggtaattcca 44229864  T
Q  784 cttcattcttccca-tttctttgtctttctcc-tcctctcttcccgacctc 832  Q
    |||||||||||||| ||||| ||||||||||| |  |||||||||||||||    
T  44229863 cttcattcttcccattttctctgtctttctccttattctcttcccgacctc 44229813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 43035969 - 43035864
Alignment:
Q  42 tgaagaaaagcagcgaagatggagaagaagaattgttgtgtagtgtgaattgaagaaaagatttcagcggtagttaactaccgctggggccaacggtagt 141  Q
    |||||||||||| | |||||| |||||||||| || ||||||||||||||||||||||||||||||| || |||||||||||||| |  ||| ||| |||    
T  43035969 tgaagaaaagcaacaaagatgtagaagaagaagtgctgtgtagtgtgaattgaagaaaagatttcagtggcagttaactaccgctagcaccagcggcagt 43035870  T
Q  142 taactg 147  Q
    ||||||    
T  43035869 taactg 43035864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 43036340 - 43036482
Alignment:
Q  7 acttcaagcatcaggtaagaattttatttgggtagtgaagaaaagcagcgaa-gatggagaagaagaattgttgtgtagtgtgaattgaagaaaagattt 105  Q
    ||||||||||| |||||||||||||||||||| |||||| ||   ||      ||||||||||||||| || ||||||||||||||||||||||||||||    
T  43036340 acttcaagcattaggtaagaattttatttgggcagtgaacaactacattacctgatggagaagaagaagtgctgtgtagtgtgaattgaagaaaagattt 43036439  T
Q  106 cagcggtagttaactaccgctggggc--caacggtagttaact 146  Q
    ||||||||||||||| | || ||| |  |||||||||||||||    
T  43036440 cagcggtagttaactgctgccgggtcctcaacggtagttaact 43036482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 43036446 - 43036551
Alignment:
Q  166 tagttaactgttgtcgggtcctcaacgatagttgactactactgaggaca-ttaagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggca 264  Q
    |||||||||| || ||||||||||||| ||||| |||||  ||  || || ||||||||||||||||||||  |||||| |||||||||| ||||| |||    
T  43036446 tagttaactgctgccgggtcctcaacggtagttaactaccgctaggggcatttaagtattttacttgtgtcattgtgaagttttttatgtcaaaaaagca 43036545  T
Q  265 attttc 270  Q
    ||||||    
T  43036546 attttc 43036551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 687 - 759
Target Start/End: Complemental strand, 26348964 - 26348892
Alignment:
Q  687 agaaatgataaatggacatacaatttgtgacacaaatacaacactatgggcaaaacggtaattttggtgtgaa 759  Q
    |||||||| || | |||| |||||||  |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  26348964 agaaatgacaagtagacacacaattttagacacaaatacaacaccatgggtaaaacagtaattttggtgtgaa 26348892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 2333850 - 2333904
Alignment:
Q  216 ttaagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggcaattttc 270  Q
    ||||||||||||||||||||  |||||| |||||||||| | ||| |||||||||    
T  2333850 ttaagtattttacttgtgtcattgtgaagttttttatgtcagaaaagcaattttc 2333904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 685 - 832
Target Start/End: Original strand, 12408488 - 12408638
Alignment:
Q  685 agagaaatgataaatggacatacaatttgtgacacaaatacaacactatgggcaaaacggtaattttggtgtgaagtatagggttaattg-gtaattcga 783  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||  ||||||||||| ||||||||||||||||  ||||| ||||||| ||||||| |    
T  12408488 agagaaatgataaatggacacacaatttgaaacacaaatacaacatcatgggcaaaacagtaattttggtgtgaaccataggattaattgagtaattcca 12408587  T
Q  784 cttcattcttccca-tttctttgtctttctcc-tcctctcttcccgacctc 832  Q
    |||||||||||||| ||||||||||||||||| || |||||||||| ||||    
T  12408588 cttcattcttcccattttctttgtctttctccttcttctcttcccggcctc 12408638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 685 - 773
Target Start/End: Original strand, 47692454 - 47692542
Alignment:
Q  685 agagaaatgataaatggacatacaatttgtgacacaaatacaacactatgggcaaaacggtaattttggtgtgaagtatagggttaatt 773  Q
    |||| |||||||| | |||| | ||||||||||||||| ||||||| ||||| ||||| |||||||||||||||| || |||| |||||    
T  47692454 agagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtaattttggtgtgaaatacagggataatt 47692542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 685 - 759
Target Start/End: Complemental strand, 20809363 - 20809289
Alignment:
Q  685 agagaaatgataaatggacatacaatttgtgacacaaatacaacactatgggcaaaacggtaattttggtgtgaa 759  Q
    ||||||||||||| | |||| |||||||  |||||||||||||||| |||| ||||||  |||||||||||||||    
T  20809363 agagaaatgataagtagacacacaattttggacacaaatacaacaccatggacaaaacaataattttggtgtgaa 20809289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 16869252 - 16869297
Alignment:
Q  103 tttcagcggtagttaactaccgctggggccaacggtagttaactgt 148  Q
    ||||||||||||||||||||||||| | ||||| ||||||||||||    
T  16869252 tttcagcggtagttaactaccgctgagtccaacagtagttaactgt 16869297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 87 - 176
Target Start/End: Complemental strand, 42683622 - 42683533
Alignment:
Q  87 tgaattgaagaaaagatttcagcggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaactgt 176  Q
    ||||||||||| | || ||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||   ||||||||||    
T  42683622 tgaattgaagagatgaattcagcggtagttaactaccgctgaaaccaacggtagttaactgctgtcgggtcctcaacaggagttaactgt 42683533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 4424860 - 4424925
Alignment:
Q  109 cggtagttaactaccgctggggccaacggtagttaactgttgtcgggtcctcaacgatagttaact 174  Q
    ||||||||||||| || |||| ||| ||||||||||||| || ||||||||||||| |||||||||    
T  4424860 cggtagttaactatcgttgggaccagcggtagttaactgatgccgggtcctcaacggtagttaact 4424925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 4425983 - 4425914
Alignment:
Q  166 tagttaactgttgtcgggtcctcaacgatagttgactactactgaggaca-ttaagtattttacttgtgt 234  Q
    ||||||||||||||||||||||||||| ||||| | ||||  || || || |||||||||||||||||||    
T  4425983 tagttaactgttgtcgggtcctcaacggtagttaagtactgttgggggcatttaagtattttacttgtgt 4425914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 4425986 - 4425949
Alignment:
Q  135 cggtagttaactgttgtcgggtcctcaacgatagttaa 172  Q
    |||||||||||||||||||||||||||||| |||||||    
T  4425986 cggtagttaactgttgtcgggtcctcaacggtagttaa 4425949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 41474697 - 41474776
Alignment:
Q  166 tagttaactgttgtcgggtcctcaacgatagttgactactactgaggacattaagtattttacttgtgtcgatgtgaaatt 246  Q
    ||||||||||||| |||||| |||||| ||||| |||||| |||| |   ||||||||||||||||||||  |||||||||    
T  41474697 tagttaactgttg-cgggtcatcaacggtagttaactactgctgaagtatttaagtattttacttgtgtcattgtgaaatt 41474776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 34457018 - 34456935
Alignment:
Q  188 caacgatagttgactactactgaggacatt-aagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggcaattttc 270  Q
    ||||||||||| |||||  |||||| |||| ||||||||||||||||||  | | || |||||||||| ||||| |||||||||    
T  34457018 caacgatagttaactaccgctgagggcatttaagtattttacttgtgtctttataaagttttttatgtcaaaaaagcaattttc 34456935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 270
Target Start/End: Complemental strand, 42683577 - 42683466
Alignment:
Q  160 caacgatagttaactgttgtcgggtcctcaacgatagttgactactactgaggacatt-aagtattttacttgtgtcgatgtgaaattttttatgtgaaa 258  Q
    ||||| |||||||||| |||||||||||||||   |||| |||   | || || |||| |||||||||| |||||||  |||||| |||||||||| |||    
T  42683577 caacggtagttaactgctgtcgggtcctcaacaggagttaactgtcattgggggcatttaagtattttatttgtgtcattgtgaagttttttatgtcaaa 42683478  T
Q  259 aaggcaattttc 270  Q
    || |||||||||    
T  42683477 aaagcaattttc 42683466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 18815711 - 18815748
Alignment:
Q  109 cggtagttaactaccgctggggccaacggtagttaact 146  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  18815711 cggtggttaactaccgctggggccagcggtagttaact 18815748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 686 - 773
Target Start/End: Complemental strand, 15074496 - 15074409
Alignment:
Q  686 gagaaatgataaatggacatacaatttgtgacacaaatacaacactatgggcaaaacggtaattttggtgtgaagtatagggttaatt 773  Q
    |||||||||||||| |||| |||||||  |||||| ||||||||| ||||||||||| |||||||||||||||| || |||| |||||    
T  15074496 gagaaatgataaatagacacacaattttagacacatatacaacaccatgggcaaaacagtaattttggtgtgaactagaggggtaatt 15074409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 38653080 - 38653135
Alignment:
Q  216 ttaagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggcaattttca 271  Q
    |||||||||||| |||||||  | |||||||||||||||||||||  |||||||||    
T  38653080 ttaagtattttatttgtgtctttatgaaattttttatgtgaaaaaatcaattttca 38653135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 716 - 767
Target Start/End: Original strand, 45430424 - 45430475
Alignment:
Q  716 acacaaatacaacactatgggcaaaacggtaattttggtgtgaagtataggg 767  Q
    |||||||||| |||| ||| ||||||| |||||||||||||||| |||||||    
T  45430424 acacaaatacgacaccatgtgcaaaactgtaattttggtgtgaaatataggg 45430475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 18792656 - 18792713
Alignment:
Q  216 ttaagtattttacttgtgtcgatgtgaaattttttatgtgaaaaaggcaattttcaat 273  Q
    ||||||||||||||||||||  | |||| |||||||||| ||||| |||||| |||||    
T  18792656 ttaagtattttacttgtgtctttatgaagttttttatgtcaaaaaagcaattgtcaat 18792713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 686 - 773
Target Start/End: Original strand, 10519543 - 10519630
Alignment:
Q  686 gagaaatgataaatggacatacaatttgtgacacaaatacaacactatgggcaaaacggtaattttggtgtgaagtatagggttaatt 773  Q
    |||||||||||| | |||| | |||||  |||||||||||||||| ||||||||||| || ||||||||||||| || |||| |||||    
T  10519543 gagaaatgataattagacacataattttggacacaaatacaacaccatgggcaaaacagtcattttggtgtgaactagaggggtaatt 10519630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 106898 - 106851
Alignment:
Q  107 agcggtagttaactaccgctggggccaacggtagttaactgttgtcgg 154  Q
    |||||||||||||||||||||| |||| ||| ||||||||||||||||    
T  106898 agcggtagttaactaccgctggtgccagcggcagttaactgttgtcgg 106851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 1086 - 1123
Alignment:
Q  89 aattgaagaaaagatttcagcggtagttaactaccgct 126  Q
    |||||||||||||  |||||||||||||||||||||||    
T  1086 aattgaagaaaagtattcagcggtagttaactaccgct 1123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 28678 - 28719
Alignment:
Q  219 agtattttacttgtgtcgatgtgaaattttttatgtgaaaaa 260  Q
    ||||||||||||||||| || ||||||||||||||| |||||    
T  28678 agtattttacttgtgtcaatatgaaattttttatgtaaaaaa 28719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 44166 - 44125
Alignment:
Q  219 agtattttacttgtgtcgatgtgaaattttttatgtgaaaaa 260  Q
    ||||||||||||||||| || ||||||||||||||| |||||    
T  44166 agtattttacttgtgtcaatatgaaattttttatgtaaaaaa 44125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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