View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709-Insertion-30 (Length: 361)

Name: NF1709-Insertion-30
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709-Insertion-30
NF1709-Insertion-30
[»] chr7 (5 HSPs)
chr7 (149-361)||(34995326-34995540)
chr7 (31-113)||(34995546-34995628)
chr7 (10-66)||(34994917-34994973)
chr7 (10-50)||(4181037-4181077)
chr7 (10-72)||(11698124-11698186)
[»] chr5 (6 HSPs)
chr5 (10-70)||(14394683-14394743)
chr5 (10-72)||(34064852-34064914)
chr5 (10-50)||(36423201-36423241)
chr5 (10-104)||(40705538-40705632)
chr5 (15-71)||(10143127-10143183)
chr5 (14-50)||(31569583-31569619)
[»] chr8 (3 HSPs)
chr8 (10-105)||(30959263-30959358)
chr8 (10-50)||(1283361-1283401)
chr8 (10-72)||(8826431-8826493)
[»] chr4 (5 HSPs)
chr4 (10-47)||(50464305-50464342)
chr4 (10-72)||(56459725-56459787)
chr4 (14-71)||(35318331-35318388)
chr4 (10-71)||(52305839-52305900)
chr4 (12-52)||(31907682-31907722)
[»] chr1 (1 HSPs)
chr1 (10-72)||(19402356-19402418)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 149 - 361
Target Start/End: Complemental strand, 34995540 - 34995326
Alignment:
Q  149 tatcttttcatcttcatcacttgtatgtagaagaatcaatc--tgccatctaccaatttatctagttatgcctttagtgtgttttgttattttaaagcaa 246  Q
    |||||||||||||||||||||||||||||||||||||||||  || |||||    |   |  | || ||  |||  || |||||||||||||||||||||    
T  34995540 tatcttttcatcttcatcacttgtatgtagaagaatcaatctatgtcatctgaataaaaagattgtcatcacttgtgtttgttttgttattttaaagcaa 34995441  T
Q  247 ttttcatgaaaaatgtgaaacgtgaacgggatctcttcatttgtaacaaaataaaactaaaacaaaagaggacgaataacgtgaaatagatctgatctcg 346  Q
    |||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  34995440 ttttcatgaataatgtgaaatgtgaacgggatctgttcatctgtaacaaaataaaactaaaacaaaagaggaccaagaacgtgaaatagatctgatctcg 34995341  T
Q  347 ccgcctcacctctct 361  Q
    |||||||||||||||    
T  34995340 ccgcctcacctctct 34995326  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 34995628 - 34995546
Alignment:
Q  31 tatcaatcattagattaaaattagatggtcaagattaaaaaacaaaccatgtgcattcccttattgtattatttttatctaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34995628 tatcaatcattagattaaaattagatggtcaagattaaaaaacaaaccatgtgtattcccttattgtattatttttatctaac 34995546  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 34994917 - 34994973
Alignment:
Q  10 tatgagaatggtgagaataattatcaatcattagattaaaattagatggtcaagatt 66  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  34994917 tatgagaatggtgagaataactagcaatcattagattaaaattagatggtcaagatt 34994973  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 4181077 - 4181037
Alignment:
Q  10 tatgagaatggtgagaataattatcaatcattagattaaaa 50  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  4181077 tatgagaatggtgagaataattatcaaccatttgattaaaa 4181037  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 11698186 - 11698124
Alignment:
Q  10 tatgagaatggtgagaataattatcaatcattagattaaaattagatggtcaagattaaaaaa 72  Q
    |||||||||| ||||||| || |||||||||||||| |||| || |||||  |||||||||||    
T  11698186 tatgagaatgttgagaatgatcatcaatcattagatcaaaaataaatggttgagattaaaaaa 11698124  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 14394683 - 14394743
Alignment:
Q  10 tatgagaatggtgagaataattatcaatcattagattaaaattagatggtcaagattaaaa 70  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||||||||  |||||||||    
T  14394683 tatgagaatggtgataataattatcaatcattagataaaaaatagatggttgagattaaaa 14394743  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 34064914 - 34064852
Alignment:
Q  10 tatgagaatggtgagaataattatcaatcattagattaaaattagatggtcaagattaaaaaa 72  Q
    ||||||||||||||||| | ||||||| | ||||||||||| || |||||| |||||||||||    
T  34064914 tatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtctagattaaaaaa 34064852  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 36423201 - 36423241
Alignment:
Q  10 tatgagaatggtgagaataattatcaatcattagattaaaa 50  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  36423201 tatgagaatgatgagaataattatcaatcatcagattaaaa 36423241  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 40705538 - 40705632
Alignment:
Q  10 tatgagaatggtgagaataattatcaatcattagattaaaattagatggtcaagattaaaaaacaaaccatgtgcattcccttattgtattattt 104  Q
    ||||||||||||||||||| |||| || | |||||||||  ||||||||    |||||||||||||  |||| |||| |||||||  ||||||||    
T  40705538 tatgagaatggtgagaatagttattaacccttagattaattttagatggctgtgattaaaaaacaatacatgggcatccccttatcctattattt 40705632  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 10143183 - 10143127
Alignment:
Q  15 gaatggtgagaataattatcaatcattagattaaaattagatggtcaagattaaaaa 71  Q
    ||||| || |||||||||||||  |||||||||||| ||||||||  ||||||||||    
T  10143183 gaatgatgggaataattatcaactattagattaaaaatagatggttgagattaaaaa 10143127  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 31569619 - 31569583
Alignment:
Q  14 agaatggtgagaataattatcaatcattagattaaaa 50  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  31569619 agaatgatgaaaataattatcaatcattagattaaaa 31569583  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 30959358 - 30959263
Alignment:
Q  10 tatgagaatggtgagaataattatcaatcattagattaaaattagatggtcaagattaaaaaacaaaccatgtgcattcccttattgtattatttt 105  Q
    |||||||||| |||||||||||||||  | |||||||||  ||| |||||   |||||||||||||  ||||||||| | ||||||||||||||||    
T  30959358 tatgagaatgatgagaataattatcaccctttagattaactttaaatggttgtgattaaaaaacaacacatgtgcatcctcttattgtattatttt 30959263  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 1283361 - 1283401
Alignment:
Q  10 tatgagaatggtgagaataattatcaatcattagattaaaa 50  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  1283361 tatgagaatgatgagaataattatcaatcattagataaaaa 1283401  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 8826493 - 8826431
Alignment:
Q  10 tatgagaatggtgagaataattatcaatcattagattaaaattagatggtcaagattaaaaaa 72  Q
    ||||||||||||||||||| ||||||| ||||| |||| || ||||||||  ||||| |||||    
T  8826493 tatgagaatggtgagaatagttatcaaccattaaattacaaatagatggttgagatttaaaaa 8826431  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 50464342 - 50464305
Alignment:
Q  10 tatgagaatggtgagaataattatcaatcattagatta 47  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  50464342 tatgagaatggtgagaataattatcaaccattagatta 50464305  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 56459787 - 56459725
Alignment:
Q  10 tatgagaatggtgagaataattatcaatcattagattaaaattagatggtcaagattaaaaaa 72  Q
    ||||||||||||||||| | ||||||| | ||||||||||| || |||||| |||||| ||||    
T  56459787 tatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagattacaaaa 56459725  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 35318388 - 35318331
Alignment:
Q  14 agaatggtgagaataattatcaatcattagattaaaattagatggtcaagattaaaaa 71  Q
    |||||||||||||| || ||||| ||||||||||||| || |||||  ||||||||||    
T  35318388 agaatggtgagaatgatcatcaaccattagattaaaaataaatggttgagattaaaaa 35318331  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 52305839 - 52305900
Alignment:
Q  10 tatgagaatggtgagaataattatcaatcattagattaaaattagatggtcaagattaaaaa 71  Q
    |||||||||| ||||||| || ||||| ||||||||||||| || |||||  ||||||||||    
T  52305839 tatgagaatgatgagaatgatcatcaaccattagattaaaaataaatggttgagattaaaaa 52305900  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 31907722 - 31907682
Alignment:
Q  12 tgagaatggtgagaataattatcaatcattagattaaaatt 52  Q
    |||||||||||||||| |||||||| | |||||||||||||    
T  31907722 tgagaatggtgagaatgattatcaacccttagattaaaatt 31907682  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 19402356 - 19402418
Alignment:
Q  10 tatgagaatggtgagaataattatcaatcattagattaaaattagatggtcaagattaaaaaa 72  Q
    ||||||||||||||||| | ||||||| | ||||||||||| || |||||| |||||| ||||    
T  19402356 tatgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagattacaaaa 19402418  T

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