View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-32 (Length: 350)
Name: NF1709-Insertion-32
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-32 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 33836080 - 33835857
Alignment:
| Q |
8 |
gtaatttgcacatacatccatttttgtactcaatcttaatatatatacgtttgcatctatcactgtatactccatcctaatattagttcatctcattctc |
107 |
Q |
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| T |
33836080 |
gtaatttgcacatacatccatttttgtactcaatcttaatatatatacgtttgcatctatcactgtatactccatcctcatattagttcatctcattctc |
33835981 |
T |
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| Q |
108 |
aattcctctattcaagaggaagttagatttttaatttggtacgtttcaatttcctcattgaatctcaactcataaagcatagtattttcttatgtagttt |
207 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33835980 |
aattcctctattcaagaggaagttagttttttaatttggtacgtttcaatttcctcattgaatctcaactcataaagcatagtattttcttatgtagttt |
33835881 |
T |
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| Q |
208 |
cttgacttgcaacgtttttggctt |
231 |
Q |
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|||||||||||||||||||||||| |
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| T |
33835880 |
cttgacttgcaacgtttttggctt |
33835857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 243 - 350
Target Start/End: Complemental strand, 33835804 - 33835697
Alignment:
| Q |
243 |
aactttaattagtgtttcaattttcaccatatataccattaccaaccacaaaatcttaagtgattttgctaaaatatttaatctaaacatgcacaaaatc |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| || || |
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| T |
33835804 |
aactttaattagtgtttcaattttcaccatatataccattaccaaccacaaaatcttaagtggttttgctaaaatctttaatctaaacatgcaccaagtc |
33835705 |
T |
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| Q |
343 |
atacaata |
350 |
Q |
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|||||||| |
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| T |
33835704 |
atacaata |
33835697 |
T |
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