View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709-Insertion-33 (Length: 349)

Name: NF1709-Insertion-33
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709-Insertion-33
NF1709-Insertion-33
[»] chr6 (1 HSPs)
chr6 (8-349)||(35169955-35170296)


Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 349
Target Start/End: Complemental strand, 35170296 - 35169955
Alignment:
Q  8 tgaacatgcttattctgggcaccaacaagagcatcaaaaattggactagacaataacacaaacaccttatcttcattaccttgattcgctagtttcaaag 107  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35170296 tgaacatgcttattctgttcaccaacaagagcgtcaaaaattggactagacaataacacaaacaccttatcttcattaccttgattcgctaatttcaaag 35170197  T
Q  108 ctaaaacagagaaaatttcaatacaaccttctctaacagaagaatctggatctctaaaacatttaacaacagaggcaacaattttggtgagatgtgggag 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35170196 ctaaaacagagaaaatttcaacacaaccttctctaacagaagaatctggatctctaaaacatttaacaacagaggcaacaattttggtgagatgtgggag 35170097  T
Q  208 tataagagattcataaactgtggcgagtgaggcgatgagtttgagagattgttttctgatggaaggttttagttcggagtgaatgtcgagaatgcaagag 307  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35170096 tataagagattcataaactgtggcgagtgaagcgatgagtttgagagattgttttctgatggaaggttttagttcggagtgaatgtcgagaatgcaagag 35169997  T
Q  308 aggaatggggagatggaatgtggagttaatgagtggaggatt 349  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35169996 aggaatggggagatggaatgtggagttaatgagtggaggatt 35169955  T

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