View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-34 (Length: 351)
Name: NF1709-Insertion-34
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-34 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 33 - 351
Target Start/End: Complemental strand, 40068884 - 40068566
Alignment:
| Q |
33 |
atgccacatcgagaccaccttcttgcctgaccttaattgattcaacgccaacaccagcatctcttgttgttaatattacagttactccatgttcagcaag |
132 |
Q |
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| T |
40068884 |
atgccacatcgagaccaccttcttgcaagaccttaattgattcaacgccaacaccagcatctcttgttgttaatattacagttactccatgttcagcaag |
40068785 |
T |
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| Q |
133 |
ttgtcttgaaatttcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagaccaccacctatatatatattagcccaaaattaaa |
232 |
Q |
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| T |
40068784 |
ttgtcttgaaatttcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagaccaccacctatatatatattagcccaaaattaaa |
40068685 |
T |
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| Q |
233 |
tttaacacatgctaggtggaaatgtactagtattcattaattccatcgattaaggattgttaacaattgattcaaaaattaatgtcataatacgcttaat |
332 |
Q |
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| T |
40068684 |
tttaacacatgctaggtggaaatatactagtattcattaattccatcgattaaggattgttaactattgattcaaaaatcaatgtcattatacgtttaat |
40068585 |
T |
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| Q |
333 |
taaactatgtgatccggtt |
351 |
Q |
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| T |
40068584 |
taaactatgtgattcggtt |
40068566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 44965582 - 44965414
Alignment:
| Q |
46 |
accaccttcttgcctgaccttaattgattcaacgccaacaccagcatctcttgttgttaatattacagttactccatgttcagcaagttgtcttgaaatt |
145 |
Q |
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| T |
44965582 |
accaccttcttgcaagaccttaattgattcaacaccaacactagcatctcttgatgtcaacacaacagtaactccatgatctgcaagttgtcttgaaatc |
44965483 |
T |
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| Q |
146 |
tcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagaccaccacctatatata |
214 |
Q |
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| T |
44965482 |
tcaaaaccaattcctcggtttccaccggtaaccacggcaatagtttccttggaccaccacctttatata |
44965414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 214
Target Start/End: Complemental strand, 10898499 - 10898321
Alignment:
| Q |
36 |
ccacatcgagaccaccttcttgcctgaccttaattgattcaacgccaacaccagcatctcttgttgttaatattacagttactccatgttcagcaagttg |
135 |
Q |
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||||||| | ||||||||||||| | ||||||||||||| | ||| ||| ||||||||||| ||||| ||| ||||| | |||||| |||||||||| |
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| T |
10898499 |
ccacatccaaaccaccttcttgcaaaatcttaattgattcagcaccagcactagcatctcttgatgttagtataacagtcaatccatgagcagcaagttg |
10898400 |
T |
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| Q |
136 |
tcttgaaatttcaaacccaattcctctatttccaccagtaaccacagcaattgtttccttagaccaccacctatatata |
214 |
Q |
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| T |
10898399 |
cctgcaaatctcaaacccaattcctctgtttccaccggtaaccacagcaatagtttctttagaccaccacctacatata |
10898321 |
T |
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