View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709-Insertion-35 (Length: 353)

Name: NF1709-Insertion-35
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709-Insertion-35
NF1709-Insertion-35
[»] chr5 (24 HSPs)
chr5 (81-350)||(31644658-31644907)
chr5 (178-353)||(4391843-4392027)
chr5 (178-353)||(32891191-32891375)
chr5 (181-353)||(37093912-37094093)
chr5 (293-353)||(35672431-35672491)
chr5 (190-279)||(5481455-5481541)
chr5 (293-353)||(228040-228100)
chr5 (179-350)||(34286614-34286793)
chr5 (178-279)||(3456855-3456950)
chr5 (234-279)||(38614231-38614276)
chr5 (239-279)||(6614302-6614342)
chr5 (178-279)||(8692611-8692709)
chr5 (231-276)||(35672358-35672403)
chr5 (239-279)||(40925938-40925978)
chr5 (292-349)||(3456773-3456830)
chr5 (234-279)||(11739270-11739315)
chr5 (239-279)||(29223566-29223606)
chr5 (35-71)||(31644844-31644880)
chr5 (8-59)||(31644906-31644957)
chr5 (178-217)||(43141518-43141557)
chr5 (299-353)||(11739347-11739401)
chr5 (292-353)||(8692525-8692586)
chr5 (239-279)||(228126-228166)
chr5 (301-353)||(41326578-41326630)
[»] chr2 (23 HSPs)
chr2 (178-353)||(13686010-13686194)
chr2 (177-352)||(14940984-14941169)
chr2 (190-353)||(41464909-41465081)
chr2 (180-346)||(19898943-19899118)
chr2 (178-349)||(25414934-25415114)
chr2 (180-353)||(42263848-42264030)
chr2 (178-353)||(28429298-28429479)
chr2 (179-279)||(28716316-28716413)
chr2 (196-353)||(3810285-3810451)
chr2 (177-353)||(45093146-45093327)
chr2 (299-353)||(23454389-23454443)
chr2 (292-353)||(35323596-35323657)
chr2 (292-350)||(35676398-35676456)
chr2 (240-279)||(29689277-29689316)
chr2 (292-353)||(29689341-29689399)
chr2 (292-353)||(2752754-2752815)
chr2 (242-279)||(40126559-40126596)
chr2 (178-214)||(35676269-35676305)
chr2 (179-218)||(2752614-2752653)
chr2 (179-218)||(24413864-24413903)
chr2 (292-353)||(28716460-28716521)
chr2 (179-267)||(35323474-35323559)
chr2 (239-279)||(16058428-16058468)
[»] chr8 (23 HSPs)
chr8 (179-348)||(36473048-36473226)
chr8 (179-350)||(41322549-41322729)
chr8 (177-350)||(33888885-33889050)
chr8 (178-353)||(29314016-29314200)
chr8 (179-279)||(15561913-15562010)
chr8 (293-353)||(4851750-4851810)
chr8 (292-350)||(34392128-34392186)
chr8 (306-351)||(11653849-11653894)
chr8 (292-353)||(39112665-39112726)
chr8 (239-279)||(1005692-1005732)
chr8 (179-262)||(37919508-37919588)
chr8 (179-279)||(39112751-39112848)
chr8 (178-218)||(4824303-4824343)
chr8 (239-279)||(4851836-4851876)
chr8 (293-329)||(11643324-11643360)
chr8 (238-270)||(34392220-34392252)
chr8 (177-216)||(13357627-13357666)
chr8 (290-341)||(37919658-37919709)
chr8 (304-353)||(3607053-3607102)
chr8 (242-279)||(11643386-11643423)
chr8 (246-286)||(8551585-8551625)
chr8 (292-352)||(15562035-15562095)
chr8 (247-279)||(37919603-37919635)
[»] chr3 (21 HSPs)
chr3 (181-353)||(45166243-45166424)
chr3 (178-353)||(36517531-36517715)
chr3 (179-353)||(521763-521946)
chr3 (196-350)||(20912187-20912350)
chr3 (178-279)||(39145354-39145452)
chr3 (181-353)||(38176390-38176571)
chr3 (178-353)||(23642977-23643161)
chr3 (178-353)||(31788322-31788506)
chr3 (179-353)||(52546759-52546942)
chr3 (239-353)||(1561311-1561437)
chr3 (292-353)||(50612995-50613056)
chr3 (178-279)||(51297021-51297121)
chr3 (242-279)||(34624535-34624572)
chr3 (293-353)||(34624598-34624657)
chr3 (300-350)||(43203268-43203318)
chr3 (178-279)||(50612872-50612970)
chr3 (239-270)||(22650451-22650482)
chr3 (179-218)||(34624486-34624525)
chr3 (292-353)||(39145268-39145329)
chr3 (243-279)||(9496633-9496669)
chr3 (243-279)||(15461644-15461680)
[»] chr7 (9 HSPs)
chr7 (200-353)||(27425773-27425935)
chr7 (178-353)||(8307542-8307724)
chr7 (177-346)||(23991947-23992125)
chr7 (238-353)||(22326875-22327002)
chr7 (292-353)||(17611859-17611920)
chr7 (239-279)||(17611945-17611985)
chr7 (239-279)||(42195480-42195520)
chr7 (303-353)||(19479458-19479508)
chr7 (178-218)||(42195538-42195578)
[»] chr4 (21 HSPs)
chr4 (180-353)||(24683093-24683275)
chr4 (179-279)||(54358215-54358312)
chr4 (178-353)||(18375389-18375572)
chr4 (178-279)||(17847540-17847638)
chr4 (179-267)||(41497890-41497977)
chr4 (179-353)||(41633234-41633416)
chr4 (180-353)||(37674000-37674182)
chr4 (238-286)||(47281587-47281635)
chr4 (180-279)||(41878619-41878715)
chr4 (178-279)||(4512160-4512259)
chr4 (179-273)||(23348112-23348203)
chr4 (177-218)||(52726033-52726074)
chr4 (293-353)||(26179332-26179392)
chr4 (179-279)||(47838942-47839038)
chr4 (293-350)||(23348238-23348295)
chr4 (292-353)||(41878338-41878399)
chr4 (179-218)||(54021241-54021280)
chr4 (299-353)||(17847665-17847719)
chr4 (292-353)||(47281657-47281718)
chr4 (181-214)||(47282226-47282259)
chr4 (239-279)||(26179266-26179306)
[»] chr1 (21 HSPs)
chr1 (177-353)||(31032694-31032879)
chr1 (182-353)||(9098571-9098748)
chr1 (177-353)||(34475916-34476101)
chr1 (190-353)||(20808964-20809136)
chr1 (190-353)||(1270188-1270360)
chr1 (190-353)||(29095532-29095704)
chr1 (178-279)||(4624448-4624539)
chr1 (180-279)||(47550894-47550990)
chr1 (178-350)||(42480141-42480324)
chr1 (242-352)||(24135773-24135893)
chr1 (292-353)||(41646593-41646653)
chr1 (302-353)||(4194783-4194834)
chr1 (178-276)||(16254960-16255055)
chr1 (239-351)||(34807955-34808079)
chr1 (293-350)||(50663751-50663808)
chr1 (182-253)||(41647356-41647424)
chr1 (190-279)||(45010302-45010388)
chr1 (302-350)||(7167455-7167503)
chr1 (292-351)||(16254874-16254932)
chr1 (292-323)||(44714929-44714960)
chr1 (245-279)||(2958753-2958787)
[»] scaffold0002 (1 HSPs)
scaffold0002 (180-353)||(492683-492865)
[»] chr6 (9 HSPs)
chr6 (179-279)||(7646773-7646870)
chr6 (193-279)||(25935611-25935694)
chr6 (292-353)||(7646895-7646956)
chr6 (179-274)||(17366930-17367016)
chr6 (231-279)||(29487563-29487611)
chr6 (239-278)||(28898438-28898477)
chr6 (292-350)||(12607181-12607239)
chr6 (246-279)||(12607123-12607156)
chr6 (292-353)||(17366867-17366928)
[»] scaffold0132 (2 HSPs)
scaffold0132 (292-350)||(556-614)
scaffold0132 (292-350)||(8516-8574)
[»] scaffold0339 (1 HSPs)
scaffold0339 (178-218)||(13403-13443)
[»] scaffold0071 (1 HSPs)
scaffold0071 (243-279)||(512-548)


Alignment Details
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 81 - 350
Target Start/End: Complemental strand, 31644907 - 31644658
Alignment:
Q  81 tttagcattagtctatatacttgctaaagttggacgtataacatatgaattcacgaatgacgtgttgccattttgtgttgtccatttctttttgactagg 180  Q
    |||||||||| |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| ||||||| ||| |||||||||||||||||||     
T  31644907 tttagcattaatctatatacttgctaaagctggacgtacaacatgtgaattcacgaatgacgtgttgacattttgagttatccatttctttttgactag- 31644809  T
Q  181 aaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttta 280  Q
                      |||||||| ||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||     
T  31644808 ------------------aaaaatagtatcaagaattt-tgcaagacacacaattggtaagttttaattgcatggtttatttgttcacttcctatttttc 31644728  T
Q  281 aaccacgccgacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    ||||||  ||  ||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  31644727 aaccacatcggtaaatagtgcattgtgattggctgctctttattcttgaagaattattgatgttattttt 31644658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 353
Target Start/End: Original strand, 4391843 - 4392027
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||  ||||||||||||||||||||||||||||| | ||||||||  || ||| ||||||||||||||| |||||||||||||||||||||||    
T  4391843 aggaaaatgcaatttctctagaaaaatagcatcaagaattttt-caagacac--agctggcaagttttaattgcataatttatttgttcacttcctattt 4391939  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    || | ||||  |            | |||| | |||||||| |||| |||||||||||||||||| |||| |||||||||||||||||    
T  4391940 ttcagccacagctccttgaattgtggcaaacagtgcattgtaattggctgctctttattcttgaagaattcttgatgttatttttcta 4392027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 353
Target Start/End: Complemental strand, 32891375 - 32891191
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| ||| ||||||||||||||||||| ||||| | ||||||||  |||||  || |||||||||||||||||||||||||||||||||| |    
T  32891375 aggaaaatgctatttatctagaaaaatagcatcaacaattttt-caagacac--agttgacaaattttaattgcatgatttatttgttcacttcctatct 32891279  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    || | |||| ||            | |||||| ||||||||||||| ||||| |||||||||||| |||| |||||||||||||||||    
T  32891278 tttagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctttttattcttgaagaattcttgatgttatttttcta 32891191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 181 - 353
Target Start/End: Original strand, 37093912 - 37094093
Alignment:
Q  181 aaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttta 280  Q
    |||||| | ||| ||||||||||||||||||||||||| | ||||||||  |||||  ||||||||||||||| |||||||||||||||||||||||||     
T  37093912 aaaatgttatttttctagaaaaatagcatcaagaattttt-caagacac--agttgacaagttttaattgcataatttatttgttcacttcctatttttc 37094008  T
Q  281 aaccacgcc-----ga-------caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |  ||| ||     ||       |||||| | || ||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  37094009 agtcacacctccttgaattgttgcaaatagtacaatgtgattgactgctctttattcttgaagaattgttgatgttatttttcta 37094093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 35672431 - 35672491
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  35672431 aaatagtgcattgtgattgactgctctttattcttgaaaaattcttaatgttatttttcta 35672491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 5481541 - 5481455
Alignment:
Q  190 tttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||||||||||||||||||||||| |  |||||||  ||||||||| |||||| ||||||||||||||||||||||  |||||||    
T  5481541 tttctctagaaaaatagcatcaagaatttttt-aagacac--agttggtaaattttaactgcatgatttatttgttcactttttattttt 5481455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 228100 - 228040
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    ||||| |||||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  228100 aaatagtgcattgtgattgattgttctttattcttgaaaaattcttgatgttatttttcta 228040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 350
Target Start/End: Complemental strand, 34286793 - 34286614
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||| | ||||||||||||||||||||||| ||||| | ||||||||  |  ||  || |||||||||||||||||||||||||| ||||||||||    
T  34286793 ggaaaatgttatttctctagaaaaatagcatcaa-aattttttcaagacac--aactgacaaattttaattgcatgatttatttgttcatttcctatttt 34286697  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    | | |||| ||            | |||||| ||||| ||||||| ||||| |||||||||||| |||||||||||||||||||    
T  34286696 tcagccacaccttcattaattgtggcaaatagtgcatcgtgattggctgct-tttattcttgaataattattgatgttattttt 34286614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 3456950 - 3456855
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||      || ||   |  |||||||||||||||||||||||||||||||||||||||    
T  3456950 aggaaaatgctatttttctagaaaaatagcatcaagaatttttg------acacaaccgacaagttttaattgcatgatttatttgttcacttcctattt 3456857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 38614231 - 38614276
Alignment:
Q  234 ttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  38614231 ttggtaagttttaattgcatgatttatttgtttacttcctattttt 38614276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 6614302 - 6614342
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6614302 aagttttaattgcatgatttatttgttcacttcctattttt 6614342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 8692709 - 8692611
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | |||||||| |||||||||||||||||| | | ||||||||  || ||  || ||||||||||||||||||||| ||||||| ||||||    
T  8692709 aggaaaatgttatttctctaaaaaaatagcatcaagaatcttt-caagacac--agctgacaaattttaattgcatgatttatttattcactttctattt 8692613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 35672358 - 35672403
Alignment:
Q  231 cagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||    
T  35672358 cagttgataaattttaattgcatgatttatttgttcacttcctatt 35672403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 40925978 - 40925938
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  40925978 aagttttaattgtatgatttatttgttcacttcctattttt 40925938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 3456830 - 3456773
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttt 349  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||  | ||||||||||    
T  3456830 caaatagtgcattgtgagtgactgctctttattcttgaagaattcgtaatgttatttt 3456773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 279
Target Start/End: Original strand, 11739270 - 11739315
Alignment:
Q  234 ttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||||    
T  11739270 ttgggaagttttaattgcataatttatttgttcacctcctattttt 11739315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 29223606 - 29223566
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  29223606 aagttttaattgcatgatttatttgtacacttcttattttt 29223566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 31644844 - 31644880
Alignment:
Q  35 cacgtcattcgtgaattcacatgttatacgtccagct 71  Q
    ||||||||||||||||||||||||| |||||||||||    
T  31644844 cacgtcattcgtgaattcacatgttgtacgtccagct 31644880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 31644957 - 31644906
Alignment:
Q  8 tttcatttatacaatatgttgttacatcacgtcattcgtgaattcacatgtt 59  Q
    ||||||||| |||||| |||| || ||||| |||||||||||||||||||||    
T  31644957 tttcatttacacaataggttgctaaatcacctcattcgtgaattcacatgtt 31644906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 217
Target Start/End: Original strand, 43141518 - 43141557
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatt 217  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  43141518 aggaaaatgttatttctctagaaaaatagcatcaagaatt 43141557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 11739347 - 11739401
Alignment:
Q  299 tgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| |||||  ||||| |||||||||||| |||| |||||||||||||||||    
T  11739347 tgcattatgattacctgctttttattcttgaagaattcttgatgttatttttcta 11739401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 8692586 - 8692525
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| | |||| ||||||  |||| |||||||||||| |||| |||||||||||||||||    
T  8692586 caaatagtacattatgattggatgctatttattcttgaagaattcttgatgttatttttcta 8692525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 228166 - 228126
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||||||||| ||||||||||||| ||| ||||    
T  228166 aagttttaattgcatgatatatttgttcactttctactttt 228126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 41326578 - 41326630
Alignment:
Q  301 cattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    ||||||||||| |||||||||||||||||| |  |  ||||||||||||||||    
T  41326578 cattgtgattggctgctctttattcttgaagagatcgtgatgttatttttcta 41326630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 178 - 353
Target Start/End: Complemental strand, 13686194 - 13686010
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| ||||||||||||||||||||||||||||| |  |||||||  | |||| |||||||||||||||||||||||||||||||||||||||    
T  13686194 aggaaaatgctatttctctagaaaaatagcatcaagaatttttt-aagacac--aattggcaagttttaattgcatgatttatttgttcacttcctattt 13686098  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    || | |||| ||            | ||| || ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  13686097 ttcagccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttattcttgaaaaattcttgatgttatttttcta 13686010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 352
Target Start/End: Original strand, 14940984 - 14941169
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    |||||||||||| ||||||||||||||||||||||||||||| | |||||||  ||  ||| ||||||||||| ||||||||||||||||||||| ||||    
T  14940984 taggaaaatgctatttctctagaaaaatagcatcaagaattt-ttcaagaca--caactggcaagttttaatttcatgatttatttgttcacttcttatt 14941080  T
Q  277 ttt-aaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttct 352  Q
    |||  |  ||| ||            | |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14941081 tttcgagtcacacctctttgaattgtggcaaatagtgcattgtgattgactgctctttattcttgaagaattattgatgttatttttct 14941169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 190 - 353
Target Start/End: Original strand, 41464909 - 41465081
Alignment:
Q  190 tttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgc- 288  Q
    |||||||||||||||| |||||||||||| | ||||||||  |||||  |||||||||||||||||||||||||||||||| |||||||| |||||| |     
T  41464909 tttctctagaaaaataacatcaagaattttt-caagacac--agttgacaagttttaattgcatgatttatttgttcactttctatttttcaaccacacc 41465005  T
Q  289 -----------cgacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
               || |||||| |||||||||||   |||| ||||||||||||| |||| |||||||||||||||||    
T  41465006 tccttgaattgcggcaaatagtgcattgtgatccgctgcactttattcttgaagaattcttgatgttatttttcta 41465081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 346
Target Start/End: Complemental strand, 19899118 - 19898943
Alignment:
Q  180 gaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||| |||||||||||||||||||||| |||||| | ||||||||  |  ||| |||||||||||||||||||||||||||||||||||| ||||    
T  19899118 gaaaatgctatttctctagaaaaatagcatcacgaattttt-caagacac--aactggcaagttttaattgcatgatttatttgttcacttcctaatttt 19899022  T
Q  280 aaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttat 346  Q
     | | |  ||            |||||||||||||||||||||| |||||||||||||||||| |||| || |||||||    
T  19899021 cagcaatacctccttgaattgtgacaaataatgcattgtgattggctgctctttattcttgaagaattcttaatgttat 19898943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 178 - 349
Target Start/End: Complemental strand, 25415114 - 25414934
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| | ||||||||||||||| || |||||||| | ||||||||  || || ||||||||||||||||||||||||||||||||| || |||    
T  25415114 aggaaaatgctatatctctagaaaaatagtataaagaattttt-caagacac--agctgataagttttaattgcatgatttatttgttcactttcttttt 25415018  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttt 349  Q
    || | |||  ||            | |||||| ||||||||||||||||| |||||||||||||| |||| |||||||||||||    
T  25415017 ttcagccatacctccttgaattgtggcaaatagtgcattgtgattgactgttctttattcttgaagaattcttgatgttatttt 25414934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 180 - 353
Target Start/End: Complemental strand, 42264030 - 42263848
Alignment:
Q  180 gaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacg-cagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    ||||||| | |||||||| |||||||||||||| ||||| | ||||||||| ||||    ||||||||||||||| ||||||||||||| ||||||||||    
T  42264030 gaaaatgttatttctctaaaaaaatagcatcaa-aattttttcaagacacgacagtc---aagttttaattgcataatttatttgttcatttcctatttt 42263935  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    | | |||| ||            |||||||  ||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  42263934 tcagccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttcta 42263848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 178 - 353
Target Start/End: Complemental strand, 28429479 - 28429298
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| ||||| ||||||||||||||||||||||| | || |||||     ||  ||||||||||||||||||||||||||||||||| |||||    
T  28429479 aggaaaatgctatttctttagaaaaatagcatcaagaattttt-catgacac-----tgacaagttttaattgcatgatttatttgttcacttcttattt 28429386  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    || |  ||| ||            | |||||||||||||||| ||| |||||||||||||||||| |||| ||||| |||||||||||    
T  28429385 ttcagtcacacctccttaaattatggcaaataatgcattgtgtttggctgctctttattcttgaagaattcttgatattatttttcta 28429298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 28716316 - 28716413
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||| | ||| ||||||||||||||||||||||||| | ||||||||  |  ||| ||||||||||||||| ||||||||||||||||||||||||    
T  28716316 ggaaaatgttatttttctagaaaaatagcatcaagaattttt-caagacac--aactggcaagttttaattgcattatttatttgttcacttcctatttt 28716412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 353
Target Start/End: Original strand, 3810285 - 3810451
Alignment:
Q  196 tagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc------ 289  Q
    |||||||||||||||||||| || | ||||||||  || ||| ||||||||||||||||||||||||||||||||| ||||||| |  ||| ||          
T  3810285 tagaaaaatagcatcaagaaatttt-caagacac--agctggcaagttttaattgcatgatttatttgttcacttcttatttttcagtcacacctccttg 3810381  T
Q  290 ------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
          | |||||| |||||||| |||| || ||||||||||||||| ||||||| ||||||||||||||    
T  3810382 aattgtggcaaatagtgcattgtaattggctactctttattcttgaagaattattaatgttatttttcta 3810451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 353
Target Start/End: Original strand, 45093146 - 45093327
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    |||||||||| | ||||||||||||||||||||||||||||| |  |||| ||  |||||| || |||||||||||||||||| ||||| ||||||||||    
T  45093146 taggaaaatgttatttctctagaaaaatagcatcaagaatttttt-aagatac--agttgggaaattttaattgcatgatttaattgtttacttcctatt 45093242  T
Q  277 tttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    ||| |  ||  ||            | |||||| |||||||||||||    ||||||||||||||| ||||||||||||||||||||||    
T  45093243 tttcagtcatacctccttgaattgtggcaaatagtgcattgtgattg----ctctttattcttgaagaattattgatgttatttttcta 45093327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 23454389 - 23454443
Alignment:
Q  299 tgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||||||||||||||||||||||||||||| |||| || ||||||||||||||    
T  23454389 tgcattgtgattgactgctctttattcttgaagaattttttatgttatttttcta 23454443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 35323596 - 35323657
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| || |||||||||||||| |||||||||||||| |||| |||||||||||||||||    
T  35323596 caaatagtgtattgtgattgactgttctttattcttgaagaatttttgatgttatttttcta 35323657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 35676398 - 35676456
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    |||||| ||||||||| ||||||||||||||||||| || |||| ||||||||||||||    
T  35676398 caaatagtgcattgtggttgactgctctttattcttaaagaattcttgatgttattttt 35676456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 29689277 - 29689316
Alignment:
Q  240 agttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  29689277 agttttaattgcatgatttattagttcacttcctattttt 29689316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 29689341 - 29689399
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| ||||||||||||   |||||||||||||| ||||||| |||||||||||||||||    
T  29689341 caaatagtgcattgtgatt---tgctctttattcttaaaaaattcttgatgttatttttcta 29689399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 2752754 - 2752815
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| ||||||||||||| ||||| ||| |||||||| |||| || ||||||||||||||    
T  2752754 caaatagtgcattgtgattggctgctattttttcttgaagaattcttaatgttatttttcta 2752815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 40126559 - 40126596
Alignment:
Q  242 ttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  40126559 ttttaattgtatgatttatttgttcacttcctattttt 40126596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 35676269 - 35676305
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaaga 214  Q
    ||||||||||| |||||||||||||||||||||||||    
T  35676269 aggaaaatgctatttctctagaaaaatagcatcaaga 35676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 2752614 - 2752653
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaattt 218  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  2752614 ggaaattgctatttctctagaaaaatagcatcaagaattt 2752653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 24413903 - 24413864
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaattt 218  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  24413903 ggaaaatgctatttctctagaaaaatagcatcaataattt 24413864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 28716460 - 28716521
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| ||||||||||| | || || |||||||||||| |||| ||||||| |||||||||    
T  28716460 caaatagtgcattgtgatcggctactatttattcttgaagaattcttgatgtcatttttcta 28716521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 35323474 - 35323559
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttca 267  Q
    |||||||| | ||||||||||||||||| || |||||||| | | |||||  ||||||  ||||||||||| |||||||||| ||||||    
T  35323474 ggaaaatgttatttctctagaaaaatagtattaagaattttttc-agaca--cagttgacaagttttaattacatgatttatatgttca 35323559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 16058428 - 16058468
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||| ||||||||||||||| |||||||| |||||||    
T  16058428 aagttttatttgcatgatttatttattcacttcatattttt 16058468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 179 - 348
Target Start/End: Original strand, 36473048 - 36473226
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| |||||||||||||||| |||||||||||| | ||||||||  | |||||||||||||||||||||||||||||||||||||||||||||    
T  36473048 ggaaaatgctatttctctagaaaaataacatcaagaattttt-caagacac--aattggtaagttttaattgcatgatttatttgttcacttcctatttt 36473144  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattt 348  Q
    | | |||| ||            | |||||| || | ||||||||||||||||||||||||||| |||| ||||||||||||    
T  36473145 tcagccacacctccttaaattgtgtcaaatagtgtactgtgattgactgctctttattcttgaagaattcttgatgttattt 36473226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 179 - 350
Target Start/End: Complemental strand, 41322729 - 41322549
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| ||||||||||||||||||||||||||||| | |||||||   |||| | ||||||||||||||||||||| ||||| ||||||||||||    
T  41322729 ggaaaatgctatttctctagaaaaatagcatcaagaattt-ttcaagaca--tagttagcaagttttaattgcatgatttaattgttaacttcctatttt 41322633  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    |  ||||| ||             ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  41322632 tctaccacacctccttgaattttcacaaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttattttt 41322549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 350
Target Start/End: Complemental strand, 33889050 - 33888885
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    |||||||||||| ||||||||||||||||||||||||||||| | ||||| |  ||  ||  ||||||||||||||| ||||||||||||||| ||||||    
T  33889050 taggaaaatgctatttctctagaaaaatagcatcaagaattt-ttcaagaaa--caactgacaagttttaattgcataatttatttgttcactccctatt 33888954  T
Q  277 tttaaaccacgccgacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    ||| |     ||||  |||||||||||||||||||| || ||||||||||| || |||| || |||||||||||    
T  33888953 tttca-----gccggtaaataatgcattgtgattgagtgttctttattcttaaagaatttttaatgttattttt 33888885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 353
Target Start/End: Complemental strand, 29314200 - 29314016
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| |||||||| |||||||| ||||||||||| | ||||||||  |||||||||||||||||||||| |||||||||| ||||| ||||||    
T  29314200 aggaaaatgctatttctctaaaaaaatagtatcaagaattttt-caagacac--agttggtaagttttaattgcattatttatttgtccactttctattt 29314104  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    || |  ||| ||            | |||||| |||||||||||||||| |||||||||||| || |||| |||||||||||||||||    
T  29314103 ttcagtcacacctccttaaattgtggcaaatagtgcattgtgattgacttctctttattcttaaacaattcttgatgttatttttcta 29314016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 15561913 - 15562010
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| ||| ||||||||||||||||||||||||| | ||||| ||  |||||| |||||||||||| |||||||||||||||||||||||||||    
T  15561913 ggaaaatgctatttatctagaaaaatagcatcaagaattttt-caagatac--agttggcaagttttaattgtatgatttatttgttcacttcctatttt 15562009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 4851810 - 4851750
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    ||||| |||||| |||||||||||||||||||||| ||||||| |||||||||||||||||    
T  4851810 aaatagtgcattatgattgactgctctttattcttaaaaaattcttgatgttatttttcta 4851750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 350
Target Start/End: Complemental strand, 34392186 - 34392128
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    |||||| | |||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  34392186 caaatagtacattgtgattgagtgctctttattcttgaaaaattcttgatgttattttt 34392128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 11653849 - 11653894
Alignment:
Q  306 tgattgactgctctttattcttgaaaaattattgatgttatttttc 351  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||    
T  11653849 tgattgactgctctttattcttgaagaattcttgatgttatttttc 11653894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 39112726 - 39112665
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| |||||||||||||  ||||||||||| ||||| |||| |||||||||||||||||    
T  39112726 caaatagtgcattgtgattggttgctctttatttttgaagaattcttgatgttatttttcta 39112665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 1005732 - 1005692
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  1005732 aagttttaattgcataatttatttgttcacttcctattttt 1005692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 37919508 - 37919588
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttattt 262  Q
    |||||||||| ||||||||||||||||| ||||||||||||| ||| |||  ||||||  ||||||||||||| | ||||||||    
T  37919508 ggaaaatgctatttctctagaaaaatagtatcaagaatttat-caaaaca--cagttgacaagttttaattgcgtaatttattt 37919588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 39112848 - 39112751
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    ||||||||||   |||||||||||||||||| || | ||| | ||||||||  | |||| || ||||||||| ||||||||||||||||||| |||||||    
T  39112848 ggaaaatgctacatctctagaaaaatagcattaa-atttttttcaagacac--aattggcaaattttaattggatgatttatttgttcactttctatttt 39112752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 4824343 - 4824303
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaattt 218  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  4824343 aggaaaatgctatttctctagaaaaatagcattaagaattt 4824303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 4851876 - 4851836
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  4851876 aagttttaattgcatgatttatttgtttatttcctattttt 4851836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 11643360 - 11643324
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttga 329  Q
    ||||| |||||||||||||||||||||||||||||||    
T  11643360 aaatagtgcattgtgattgactgctctttattcttga 11643324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 34392252 - 34392220
Alignment:
Q  238 taagttttaattgcatgatttatttgttcactt 270  Q
    |||||||||||||||||||||||||||||||||    
T  34392252 taagttttaattgcatgatttatttgttcactt 34392220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 13357627 - 13357666
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaat 216  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  13357627 taggaaaatgctatttatctagaaaaatagcatcaagaat 13357666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 37919658 - 37919709
Alignment:
Q  290 gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgat 341  Q
    ||||||||||||||||||||||| || | ||||||||| ||||||| |||||    
T  37919658 gacaaataatgcattgtgattgattgttatttattcttaaaaaattcttgat 37919709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 3607102 - 3607053
Alignment:
Q  304 tgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    ||||||||||| || |||||||||||||  || |||||||||||||||||    
T  3607102 tgtgattgactactttttattcttgaaatttttttgatgttatttttcta 3607053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 11643423 - 11643386
Alignment:
Q  242 ttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  11643423 ttttaattgtatgatttatttgttcacttcgtattttt 11643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 8551625 - 8551585
Alignment:
Q  246 aattgcatgatttatttgttcacttcctatttttaaaccac 286  Q
    |||||||||||||||||||||| || |||||||| ||||||    
T  8551625 aattgcatgatttatttgttcattttctattttttaaccac 8551585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 15562035 - 15562095
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttct 352  Q
    |||||||||||||  ||||||||| | ||||||||| |||  || ||||||||||||||||    
T  15562035 caaataatgcattacgattgactgttatttattcttaaaatttttttgatgttatttttct 15562095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 37919603 - 37919635
Alignment:
Q  247 attgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||||||||||||||| ||||||||    
T  37919603 attgcatgatttatttgttcacttactattttt 37919635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 353
Target Start/End: Complemental strand, 45166424 - 45166243
Alignment:
Q  181 aaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttta 280  Q
    |||||| | ||||||||||||||||||||||||||||| | ||||||  |||||||| || ||||||||||||||||||||||| |||| |||||||||     
T  45166424 aaaatgttatttctctagaaaaatagcatcaagaattttt-caagac--gcagttggcaaattttaattgcatgatttatttgtccactccctatttttc 45166328  T
Q  281 aaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    | |||||||            | |||||| ||||||||||||| |||||||||||| ||||| |||| |||||||||||||||||    
T  45166327 agccacgcctccttgaattgtggcaaatagtgcattgtgattggctgctctttattattgaagaattcttgatgttatttttcta 45166243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 353
Target Start/End: Complemental strand, 36517715 - 36517531
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| ||| |||||| ||||| | |||||||||| | ||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||    
T  36517715 aggaaaatgctatttatctagataaataacttcaagaattttt-caaaacac--agttggcaagttttaattgcatgatttatttgttcacttcctattt 36517619  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    || |  ||| ||            | |||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  36517618 tttattcacacctccttgaattgtggcaaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttgtcta 36517531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 179 - 353
Target Start/End: Original strand, 521763 - 521946
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| ||| |||||| ||||| |||||||||||| |  |||||||  |||||  ||||||||||||||||||||||||||||||||||||||||    
T  521763 ggaaaatgctatttatctagacaaatatcatcaagaatttttt-aagacac--agttgtcaagttttaattgcatgatttatttgttcacttcctatttt 521859  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    | | |||| ||            | |||||| ||||||||||||| |||||||||||||||||| |||| |||||||||||| ||||    
T  521860 tcagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttatcta 521946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 350
Target Start/End: Complemental strand, 20912350 - 20912187
Alignment:
Q  196 tagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc------ 289  Q
    ||||||||||||||||||||||| |  ||||||   || || |||||||||||||||||||||||||||||||||||||||||| |  ||| ||          
T  20912350 tagaaaaatagcatcaagaattttta-aagacat--agctgataagttttaattgcatgatttatttgttcacttcctatttttcagtcacacctcctta 20912254  T
Q  290 ------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
          |||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||||    
T  20912253 aattatgacaaatagtgcattgttattgactgctctttattcttgaagaattcttgatgttattttt 20912187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 39145452 - 39145354
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| ||||||||||||||||||||||||||||| | |||||||  ||||||  |||||||||||| ||||||| |||||||| |||||||||    
T  39145452 aggaaaatgctatttctctagaaaaatagcatcaagaatttgt-caagaca--cagttgtcaagttttaattgtatgatttctttgttcatttcctattt 39145356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 353
Target Start/End: Original strand, 38176390 - 38176571
Alignment:
Q  181 aaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttta 280  Q
    |||||| | ||||| |||||||||||||| |||||||| | ||||||||  |||||| |||||||||||||||| |||||||||||||||| |||||||     
T  38176390 aaaatgatatttctttagaaaaatagcattaagaattttt-caagacac--agttggcaagttttaattgcatgttttatttgttcacttcatatttttc 38176486  T
Q  281 aaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    | |||| ||            | |||||| ||||||| ||||| |||||||||||||||||| |||| |||||| ||||||||||    
T  38176487 agccacacctccttgaattgaggcaaatagtgcattgcgattggctgctctttattcttgaagaattcttgatgatatttttcta 38176571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 178 - 353
Target Start/End: Original strand, 23642977 - 23643161
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| ||||||||||||||||||||||||||||| | ||||||||  || ||  || |||||||| ||| |||||||||||||||||||||||    
T  23642977 aggaaaatgctatttctctagaaaaatagcatcaagaattttt-caagacac--agctgacaaattttaattccataatttatttgttcacttcctattt 23643073  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    || |  ||| ||            | |||||| ||||||||||||||||  | |||||||||||| |||| |||||||||||||||||    
T  23643074 tttagtcacacctccttgaattgtggcaaatagtgcattgtgattgactaatatttattcttgaagaattcttgatgttatttttcta 23643161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 353
Target Start/End: Complemental strand, 31788506 - 31788322
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | |||||||| ||||||| | |||||||||| | ||||||||  | |||  ||||||||| |||| ||||||||||||||||||||||||    
T  31788506 aggaaaatgttatttctctataaaaataacttcaagaattttt-caagacac--aattgacaagttttaactgcaagatttatttgttcacttcctattt 31788410  T
Q  278 ttaaaccacgccgac------------aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    || || ||| ||  |            ||||| ||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  31788409 ttcaatcacacctccttgaattgtggtaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttcta 31788322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 179 - 353
Target Start/End: Complemental strand, 52546942 - 52546759
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| ||||||||||||||| ||||||||||||| | |||||||| |  |    ||||||||||||||| ||||||||||||| ||||||||||    
T  52546942 ggaaaatgctatttctctagaaaaattgcatcaagaattt-tccaagacacaccttac--aagttttaattgcataatttatttgttcatttcctatttt 52546846  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    | |  ||| ||            ||||||||   ||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  52546845 tcactcacacctcattgaattgtgacaaatagcacattgtgattggctgctctttattcttgaagaatttttgatgttatttttcta 52546759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 353
Target Start/End: Original strand, 1561311 - 1561437
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattct 326  Q
    |||||| |||||||||||||||||||||||||||||||||| | |||| ||            | |||||| |||||||||||||  |||||||||||||    
T  1561311 aagtttcaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattct 1561410  T
Q  327 tgaaaaattattgatgttatttttcta 353  Q
    |||| |||| |||||||||||||||||    
T  1561411 tgaagaattcttgatgttatttttcta 1561437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 50612995 - 50613056
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| ||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  50612995 caaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttcta 50613056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 51297021 - 51297121
Alignment:
Q  178 aggaaaatgctctttctctagaaaaa-tagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    ||||||||| | |||||||| ||||| ||||||||| ||||| | |||||| |  ||||| ||| ||||||||||||||||||||||||||||| |||||    
T  51297021 aggaaaatgttatttctctaaaaaaaatagcatcaa-aattttttcaagacgca-agttgataaattttaattgcatgatttatttgttcactttctatt 51297118  T
Q  277 ttt 279  Q
    |||    
T  51297119 ttt 51297121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 34624535 - 34624572
Alignment:
Q  242 ttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34624535 ttttaattgcatgatttatttgttcacttcctattttt 34624572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 34624598 - 34624657
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    ||||| ||||||||||||| |||||||||||||||||| |||| || ||||||||||||||    
T  34624598 aaatagtgcattgtgattggctgctctttattcttgaagaattctt-atgttatttttcta 34624657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 350
Target Start/End: Complemental strand, 43203318 - 43203268
Alignment:
Q  300 gcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    |||||||||||| |||||||||||| ||||| |||| ||||||||||||||    
T  43203318 gcattgtgattggctgctctttatttttgaagaattcttgatgttattttt 43203268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 50612872 - 50612970
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | |||||||| ||||| |||||||||||||| | ||| ||||  || ||  ||||||||||||||| ||||||||||||||||  |||||    
T  50612872 aggaaaatgttatttctctataaaaacagcatcaagaattttt-caatacac--agctgacaagttttaattgcataatttatttgttcactttatattt 50612968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 270
Target Start/End: Original strand, 22650451 - 22650482
Alignment:
Q  239 aagttttaattgcatgatttatttgttcactt 270  Q
    ||||||||||||||||||||||||||||||||    
T  22650451 aagttttaattgcatgatttatttgttcactt 22650482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 34624486 - 34624525
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaattt 218  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  34624486 ggaaaatgttatttctctagaaaaatagcatcaagaattt 34624525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 39145329 - 39145268
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| |||||||| |||| ||||| ||||||||| || |||| ||||| |||||||||||    
T  39145329 caaatagtgcattgtaattggctgctttttattcttaaagaattcttgatattatttttcta 39145268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 9496669 - 9496633
Alignment:
Q  243 tttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  9496669 tttaactgcatgatttatttgttcactccctattttt 9496633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 15461680 - 15461644
Alignment:
Q  243 tttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  15461680 tttaactgcatgatttatttgttcacttcttattttt 15461644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 200 - 353
Target Start/End: Original strand, 27425773 - 27425935
Alignment:
Q  200 aaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc---------- 289  Q
    ||||||||||||| ||||| | ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||  |              
T  27425773 aaaatagcatcaacaattttt-caagacac--agttggcaagttttaattgcatgatttatttgttcacttcctatttttcaaccacaactccttgaatt 27425869  T
Q  290 --gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
      | |||||||||||||||||||||||| ||||||||||| || |||| |||||||||||||||||    
T  27425870 gtggcaaataatgcattgtgattgactgttctttattctttaagaattcttgatgttatttttcta 27425935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 353
Target Start/End: Complemental strand, 8307724 - 8307542
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | |||||| |||||||||||||| | || || | ||||||||  |  ||| || |||||| |||||||||||||||||||||||||||||    
T  8307724 aggaaaatgatatttctcaagaaaaatagcatcgacaaatttttcaagacac--aactggcaaattttaactgcatgatttatttgttcacttcctattt 8307627  T
Q  278 ttaaaccacgcc---------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    || | |||| ||         | | |||| |||||| |||||||||  ||||||||||| ||||||| |||||||||||||||||    
T  8307626 ttgagccacaccttgaattgtggctaatagtgcattatgattgactcgtctttattcttaaaaaattcttgatgttatttttcta 8307542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 346
Target Start/End: Original strand, 23991947 - 23992125
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    |||||||||||| |||||||||||| |||| ||||||||||| | ||||||||  |  ||  |||||||||||||||||| | ||||||||||| |||||    
T  23991947 taggaaaatgctatttctctagaaacatagtatcaagaattttt-caagacac--aactgacaagttttaattgcatgatatttttgttcactttctatt 23992043  T
Q  277 tttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttat 346  Q
    ||| | |||| ||            | |||||| ||||||||||| | |||||||||||||||||| |||| ||||||||||    
T  23992044 tttcagccacacctccttgaattgtggcaaatagtgcattgtgataggctgctctttattcttgaagaattcttgatgttat 23992125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 353
Target Start/End: Complemental strand, 22327002 - 22326875
Alignment:
Q  238 taagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattc 325  Q
    ||||||||||||||||||||||||||||||||| |||||||| |  ||| ||            | |||||| | ||||||||||||| ||||||| |||    
T  22327002 taagttttaattgcatgatttatttgttcactttctatttttcagtcacacctccctgaattgtggcaaatagtacattgtgattgacggctctttcttc 22326903  T
Q  326 ttgaaaaattattgatgttatttttcta 353  Q
    ||||| |||| |||||||||||||||||    
T  22326902 ttgaagaattcttgatgttatttttcta 22326875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 17611920 - 17611859
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||||| |||| ||||||  || |||||||||||||| |||| |||||||||||||||||    
T  17611920 caaataattcattatgattggttgttctttattcttgaagaattcttgatgttatttttcta 17611859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 17611985 - 17611945
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  17611985 aagttttaattgtatgatttatttattcacttcctattttt 17611945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 42195520 - 42195480
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  42195520 aagttttaattgcatgatttatttgttcactccttattttt 42195480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 19479508 - 19479458
Alignment:
Q  303 ttgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||||||| | ||||||||| ||||| |||| |||||||||||||||||    
T  19479508 ttgtgattgattactctttatttttgaagaatttttgatgttatttttcta 19479458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 42195578 - 42195538
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaattt 218  Q
    ||||||||| | |||||||||||||||| ||||||||||||    
T  42195578 aggaaaatgttatttctctagaaaaataacatcaagaattt 42195538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 180 - 353
Target Start/End: Complemental strand, 24683275 - 24683093
Alignment:
Q  180 gaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||| | ||||| ||||||||||| ||||||||||| | |||||||| |  ||| ||||||||||||||||||||||||||||||||||||||||||    
T  24683275 gaaaatgttatttctttagaaaaatagtatcaagaattttt-caagacacac--ttgataagttttaattgcatgatttatttgttcacttcctattttt 24683179  T
Q  280 aaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
     |  ||| ||            | |||||| ||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  24683178 cagtcacaccttcctgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttcta 24683093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 179 - 279
Target Start/End: Complemental strand, 54358312 - 54358215
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||| | ||||||||||||||||||||||||||||| | |||||||   |||||| ||||||||||||||||||||||||||||||||||||||||    
T  54358312 ggaaaatgttatttctctagaaaaatagcatcaagaattttt-caagacat--agttggcaagttttaattgcatgatttatttgttcacttcctatttt 54358216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 353
Target Start/End: Original strand, 18375389 - 18375572
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | ||||||||||||||||||||||||||||| | ||||||||  |  ||| |||||||||||||||||||||||||||||||||||| ||    
T  18375389 aggaaaatgttatttctctagaaaaatagcatcaagaattttt-caagacac--aactggcaagttttaattgcatgatttatttgttcacttccta-tt 18375484  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    || | |||| ||            | |||||| ||||||||||||||| || ||||||||||||| |||| |||||||||||||||||    
T  18375485 ttcagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgcactttattcttgaagaattcttgatgttatttttcta 18375572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 17847540 - 17847638
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | ||||||| ||||||||||||||||||||| | ||||||||  |||||| |||||||||||||||||||||||||||||||| ||||||    
T  17847540 aggaaaatgttatttctctcgaaaaatagcatcaagaattttt-caagacac--agttggcaagttttaattgcatgatttatttgttcactttctattt 17847636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 41497890 - 41497977
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttca 267  Q
    |||||||||| |||||||| |||||||||||||| |||| || |||||||| |||||| ||||||||||||||||||||||||||||||    
T  41497890 ggaaaatgctatttctctaaaaaaatagcatcaaaaatt-attcaagacacacagttgataagttttaattgcatgatttatttgttca 41497977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 179 - 353
Target Start/End: Complemental strand, 41633416 - 41633234
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| ||||||||||||||||||||||||||||| | |||||||   || ||  || |||||||| ||| ||||||||||||||||||||||||    
T  41633416 ggaaaatgctatttctctagaaaaatagcatcaagaattttt-caagacaa--agctgacaaattttaattacat-atttatttgttcacttcctatttt 41633321  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    | | |||| ||            | ||| || ||||||||||||| |||||||||||||||||| |||| || ||||||||||||||    
T  41633320 tcagccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttattcttgaagaattcttaatgttatttttcta 41633234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 353
Target Start/End: Original strand, 37674000 - 37674182
Alignment:
Q  180 gaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||| | ||||||||||||||||||||||||||||| | |||||||||    ||  ||||||||||||||||||||||||||| ||||  |||||||    
T  37674000 gaaaatgatatttctctagaaaaatagcatcaagaattttt-caagacacgtg--tgacaagttttaattgcatgatttatttgttaactttttattttt 37674096  T
Q  280 aaaccacgcc-----gac-------aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
     | |||| ||     ||        ||||| | |||||||||||||||||||||| ||||||| |||| |||||||||||||||||    
T  37674097 cagccacacctctttgaattgtagtaaatagtacattgtgattgactgctctttagtcttgaagaattcttgatgttatttttcta 37674182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 47281587 - 47281635
Alignment:
Q  238 taagttttaattgcatgatttatttgttcacttcctatttttaaaccac 286  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47281587 taagttttaattgcatgatttatttgttcacttcctatttttcaaccac 47281635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 41878715 - 41878619
Alignment:
Q  180 gaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||| ||| | ||||||||||||||||||||||| | |||||||   |  ||  ||||||||||||||||||||||||||| |||||||||||||    
T  41878715 gaaaatgctatttatttagaaaaatagcatcaagaattttt-caagacat--aactgacaagttttaattgcatgatttatttgtttacttcctattttt 41878619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 4512160 - 4512259
Alignment:
Q  178 aggaaaatgctctttctctagaaaaa-tagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    ||||||||| | |||||||||||||| ||||||||||||||| | ||| || |  || ||| ||||||||||||||| ||||||||||| ||||||||||    
T  4512160 aggaaaatgttatttctctagaaaaaatagcatcaagaattttt-caatactc--aggtggcaagttttaattgcatcatttatttgtttacttcctatt 4512256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 273
Target Start/End: Original strand, 23348112 - 23348203
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcct 273  Q
    |||||||||| ||||||||||||||||||||||| ||||| | ||||| ||  |   |  |||||||||||||||||||||||||||||||||||    
T  23348112 ggaaaatgctatttctctagaaaaatagcatcaataattttt-caagaaac--aaccgacaagttttaattgcatgatttatttgttcacttcct 23348203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 52726074 - 52726033
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaattt 218  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  52726074 taggaaaatgctatttctctagaaaaatagcatcaagaattt 52726033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 26179332 - 26179392
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    ||||| |||| |||||||| |||||||||||||||||| |||| || ||||||||||||||    
T  26179332 aaatagtgcactgtgattggctgctctttattcttgaagaattcttaatgttatttttcta 26179392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 47838942 - 47839038
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||| ||||| |||||||| |||||||||||||||||||  | |||||||  ||| |||| || |||||||||||||| | |||||||| || |||||||    
T  47838942 ggaacatgctatttctctataaaaatagcatcaagaatt--ttcaagaca--cagctggtgagatttaattgcatgatgtttttgttcattttctatttt 47839037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 350
Target Start/End: Original strand, 23348238 - 23348295
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    ||||| || ||||||||||| || ||||||||||| || |||||||||||||||||||    
T  23348238 aaatagtgtattgtgattgagtgttctttattcttaaagaattattgatgttattttt 23348295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 41878399 - 41878338
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| ||||||||||||| ||| ||||||||| |||| ||||  ||||||||||||||||    
T  41878399 caaatagtgcattgtgattggctgatctttattcatgaagaattcatgatgttatttttcta 41878338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 54021241 - 54021280
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaattt 218  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  54021241 ggaaaatgttatttctctagaaaaatagcatcaagaattt 54021280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 17847665 - 17847719
Alignment:
Q  299 tgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| |||||||||||| |||| ||||||| |||| || ||||||||||||||    
T  17847665 tgcattatgattgactgctttttaatcttgaagaattttttatgttatttttcta 17847719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 47281657 - 47281718
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| ||||||||||||    | |||||||||||||| |||| |||||||||||||||||    
T  47281657 caaatagtgcattgtgatttgtcgttctttattcttgaagaattcttgatgttatttttcta 47281718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 47282259 - 47282226
Alignment:
Q  181 aaaatgctctttctctagaaaaatagcatcaaga 214  Q
    |||||||| |||||||||||||||||||||||||    
T  47282259 aaaatgctatttctctagaaaaatagcatcaaga 47282226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 26179266 - 26179306
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  26179266 aagtttcaatttgatgatttatttgttcacttcctattttt 26179306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 353
Target Start/End: Original strand, 31032694 - 31032879
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    |||||||||| | ||| ||||||||||||||||||||||||| | ||||| ||  |||||  |||||||||||||||||||||||||||||||| |||||    
T  31032694 taggaaaatgttatttttctagaaaaatagcatcaagaattttt-caagatac--agttgacaagttttaattgcatgatttatttgttcactttctatt 31032790  T
Q  277 tttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    ||| | |||| ||            | |||||| ||||||||||||||||| |||||||||||||| |||| |||||| ||||||||||    
T  31032791 tttcagccacacctccttgaactgtggcaaatagtgcattgtgattgactgatctttattcttgaagaattcttgatgatatttttcta 31032879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 353
Target Start/End: Original strand, 9098571 - 9098748
Alignment:
Q  182 aaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaa 281  Q
    ||||||| ||||||||||||||||||||||||||||| | ||| ||||  || ||  ||||||||||||||||||||||||||||||||| |||| || |    
T  9098571 aaatgctttttctctagaaaaatagcatcaagaattttt-caaaacac--agctgacaagttttaattgcatgatttatttgttcacttcgtattattca 9098667  T
Q  282 accacgcc---------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
     |||| ||         | || ||| ||||||||||||| ||||||||||||||| || |||| |||||||||||||||||    
T  9098668 gccacaccttcttgaatggcagatagtgcattgtgattggctgctctttattcttaaagaattcttgatgttatttttcta 9098748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 177 - 353
Target Start/End: Complemental strand, 34476101 - 34475916
Alignment:
Q  177 taggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    |||||||| ||| ||||||||||||||||| ||||||||||| | |||||||   || ||  ||||||||||||||||||| ||||||||||||||||||    
T  34476101 taggaaaaggctatttctctagaaaaatagtatcaagaattttt-caagacaa--agctgacaagttttaattgcatgattgatttgttcacttcctatt 34476005  T
Q  277 tttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    ||| | |||| ||            | || ||| ||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  34476004 tttcagccacacctccttgaattggggcagatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttcta 34475916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 190 - 353
Target Start/End: Complemental strand, 20809136 - 20808964
Alignment:
Q  190 tttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc 289  Q
    ||||||||||||||||||||||||||||| | ||||| |||  | ||| ||||||||||| |||| |||||| |||||||||||| |||| | ||||  |    
T  20809136 tttctctagaaaaatagcatcaagaattttt-caagatacg--ggtggcaagttttaattacatggtttattcgttcacttcctagttttcagccacatc 20809040  T
Q  290 ------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
                | ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  20809039 tccttgaattgtggcaaataatgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttcta 20808964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 190 - 353
Target Start/End: Complemental strand, 1270360 - 1270188
Alignment:
Q  190 tttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc 289  Q
    ||||||||||||||||||||||| ||||| | ||||||||  |||||  |||||||||||||| ||||||||| |||||||||||||||| | |||| ||    
T  1270360 tttctctagaaaaatagcatcaaaaattttt-caagacac--agttgacaagttttaattgcacgatttatttattcacttcctatttttcagccacacc 1270264  T
Q  290 ------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
                | |||||| ||||||| |||||  ||||||||||||||||| |||| |||||||||||||||||    
T  1270263 ttcttgaattgtggcaaatagtgcattgagattggttgctctttattcttgaagaattcttgatgttatttttcta 1270188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 190 - 353
Target Start/End: Original strand, 29095532 - 29095704
Alignment:
Q  190 tttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc 289  Q
    ||||||||||||||||||||||| || || | |||||||   |||||  |||||||||||||||||| | |||||||||||||||||||| | |||| ||    
T  29095532 tttctctagaaaaatagcatcaaaaaatttt-caagacat--agttgccaagttttaattgcatgatatctttgttcacttcctatttttcagccacacc 29095628  T
Q  290 ------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
                | |||||| ||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  29095629 tccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttcta 29095704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 4624539 - 4624448
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||||| |||||||||||||||||||||||||||| || |||||| |         |||||||||||||||||||||||||||||||||||||||    
T  4624539 aggaaaatgctatttctctagaaaaatagcatcaagaatt-attcaagactc---------aagttttaattgcatgatttatttgttcacttcctattt 4624450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 47550990 - 47550894
Alignment:
Q  180 gaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||| | ||||||||||||||||||||||||||||| | ||||| ||  || ||| |||||||||||||||||||||| |||||| |||||||||||    
T  47550990 gaaaatgttatttctctagaaaaatagcatcaagaattttt-caagaaac--agctggcaagttttaattgcatgatttatatgttcatttcctattttt 47550894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 350
Target Start/End: Complemental strand, 42480324 - 42480141
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattt 277  Q
    ||||||||| | ||||||||||||||||||||||||||||| | ||||| || |||   | ||||||||||||||| |||||||| |||| || ||||||    
T  42480324 aggaaaatgttatttctctagaaaaatagcatcaagaattttt-caagagacacagcatgcaagttttaattgcataatttatttattcattttctattt 42480226  T
Q  278 ttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    || | |||| ||            |  ||||||| |||||| |||||||||| |||||||||||| |||| ||||||||||||||    
T  42480225 ttcagccacacctcattgaattgtggtaaataatacattgtaattgactgctatttattcttgaagaattcttgatgttattttt 42480141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 352
Target Start/End: Complemental strand, 24135893 - 24135773
Alignment:
Q  242 ttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttga 329  Q
    |||||||||||||||||||||||||||||||||||||| | |||| ||            | |||||  ||||||||||||| |||||||||||||||||    
T  24135893 ttttaattgcatgatttatttgttcacttcctatttttcagccacacctccttgaattgtggcaaat--tgcattgtgattggctgctctttattcttga 24135796  T
Q  330 aaaattattgatgttatttttct 352  Q
    | |||| ||||||||||||||||    
T  24135795 agaattcttgatgttatttttct 24135773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 41646653 - 41646593
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| |||||||||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  41646653 caaatagtgcattgtgattgactgctctttattcttgaagaatt-ctgatgttatttttcta 41646593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 4194834 - 4194783
Alignment:
Q  302 attgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||||||||||| |||||||||||||| |||| |||||||||||||||||    
T  4194834 attgtgattgactgttctttattcttgaagaattcttgatgttatttttcta 4194783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 276
Target Start/End: Complemental strand, 16255055 - 16254960
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatt 276  Q
    ||||||||||| ||||||||||||||||||||||||||||| | ||| |||  ||  ||  ||  |||||||| |||||||||||||||||||||||||    
T  16255055 aggaaaatgctatttctctagaaaaatagcatcaagaattt-ttcaataca--caactgacaaaatttaattgtatgatttatttgttcacttcctatt 16254960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 351
Target Start/End: Complemental strand, 34808079 - 34807955
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctatttttaaaccacgcc------------gacaaataatgcattgtgattgactgctctttattct 326  Q
    |||||||||||||||||||||||| |||||||| ||||||| | |||| ||            || ||||| | |||||||||||||||||||||||| |    
T  34808079 aagttttaattgcatgatttatttattcacttcatatttttcagccacacctccttaaattatgataaatagtacattgtgattgactgctctttatttt 34807980  T
Q  327 tgaaaaattattgatgttatttttc 351  Q
    |||| |||| |||||||||||||||    
T  34807979 tgaagaattcttgatgttatttttc 34807955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 350
Target Start/End: Complemental strand, 50663808 - 50663751
Alignment:
Q  293 aaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    |||||||||||| | ||| ||||||||||||||||| |||||| ||||||||||||||    
T  50663808 aaataatgcattatcattcactgctctttattcttgtaaaatttttgatgttattttt 50663751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 41647424 - 41647356
Alignment:
Q  182 aaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcat 253  Q
    ||||||| ||||||||||||||||||||||||||||| | |||||||  ||||||  |||||||||||||||    
T  41647424 aaatgctatttctctagaaaaatagcatcaagaattt-ttcaagaca--cagttgacaagttttaattgcat 41647356  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 45010388 - 45010302
Alignment:
Q  190 tttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||||||||||| |||||||| | ||| ||||  |  ||  || |||||||||||||||||||||||||||||| |||||||    
T  45010388 tttctctagaaaaatagcataaagaattttt-caaaacac--atctgacaaattttaattgcatgatttatttgttcacttcttattttt 45010302  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 7167455 - 7167503
Alignment:
Q  302 attgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    |||||||||||||| |||||||||||||| |||| |||| |||||||||    
T  7167455 attgtgattgactgttctttattcttgaagaattcttgacgttattttt 7167503  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 16254932 - 16254874
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttc 351  Q
    |||||| ||||||||||||| ||| |||||||||||||| |||| || ||||||||||||    
T  16254932 caaatagtgcattgtgattggctgatctttattcttgaagaattctt-atgttatttttc 16254874  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 323
Target Start/End: Original strand, 44714929 - 44714960
Alignment:
Q  292 caaataatgcattgtgattgactgctctttat 323  Q
    ||||||||||||||||||||||||||||||||    
T  44714929 caaataatgcattgtgattgactgctctttat 44714960  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 2958753 - 2958787
Alignment:
Q  245 taattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||||||||||||||||||| |||||||||    
T  2958753 taattgcatgatttatttgttcactccctattttt 2958787  T

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Target: scaffold0002 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 180 - 353
Target Start/End: Complemental strand, 492865 - 492683
Alignment:
Q  180 gaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacg-cagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    ||||||| | |||||||| |||||||||||||| ||||| | ||||||||| ||||    ||||||||||||||| ||||||||||||| ||||||||||    
T  492865 gaaaatgttatttctctaaaaaaatagcatcaa-aattttttcaagacacgacagtc---aagttttaattgcataatttatttgttcatttcctatttt 492770  T
Q  279 taaaccacgcc------------gacaaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    | | |||| ||            |||||||  ||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  492769 tcagccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttattcttgaagaattcttgatgttatttttcta 492683  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 7646773 - 7646870
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    |||||||||| ||||||||||||||||| |||| |||||| | ||||||||  |  ||| ||||||||||||||||||||||||||||| ||||||||||    
T  7646773 ggaaaatgctatttctctagaaaaatagtatcaggaattttt-caagacac--atctggcaagttttaattgcatgatttatttgttcatttcctatttt 7646869  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 25935694 - 25935611
Alignment:
Q  193 ctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||||||||||||||||| | |||||||  ||| ||| ||||||||||| |||||||||||  ||||||| ||||||||    
T  25935694 ctctagaaaaatagcatcaagaattt-ttcaagaca--cagctggcaagttttaattacatgatttattctttcactttctattttt 25935611  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 7646895 - 7646956
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| ||||||||||||| |||||||||||| || || |||| |||||||||||||||||    
T  7646895 caaatagtgcattgtgattggctgctctttatttttaaagaattcttgatgttatttttcta 7646956  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 17367016 - 17366930
Alignment:
Q  179 ggaaaatgctctttctctagaaaaatagcatcaagaatttatgcaagacacgcagttggtaagttttaattgcatgatttatttgttcacttccta 274  Q
    |||||||||| ||||||||||||||||||||||| ||||| | ||||||||||       ||||||||||||||||  ||||||||||||||||||    
T  17367016 ggaaaatgctatttctctagaaaaatagcatcaa-aattt-ttcaagacacgc-------aagttttaattgcatgcattatttgttcacttccta 17366930  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 29487563 - 29487611
Alignment:
Q  231 cagttggtaagttttaattgcatgatttatttgttcacttcctattttt 279  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||||    
T  29487563 cagttggtaagtgttgattgcatgatttatttgttcactccctattttt 29487611  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 28898438 - 28898477
Alignment:
Q  239 aagttttaattgcatgatttatttgttcacttcctatttt 278  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  28898438 aagttttaattgcatgatttatttgttcactccctatttt 28898477  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 12607181 - 12607239
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    |||||| |||| ||||||||||||||||||||||||||| |||| ||||| || |||||    
T  12607181 caaatagtgcactgtgattgactgctctttattcttgaagaattcttgatttttttttt 12607239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 12607123 - 12607156
Alignment:
Q  246 aattgcatgatttatttgttcacttcctattttt 279  Q
    ||||||||||||||||||||||||| ||||||||    
T  12607123 aattgcatgatttatttgttcactttctattttt 12607156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 17366928 - 17366867
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttatttttcta 353  Q
    |||||| |||| |||||||  ||| ||||||||||||||||||| || ||||| ||||||||    
T  17366928 caaatagtgcagtgtgattagctgttctttattcttgaaaaattcttaatgttgtttttcta 17366867  T

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Target: scaffold0132 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 292 - 350
Target Start/End: Complemental strand, 614 - 556
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    |||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  614 caaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttattttt 556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 292 - 350
Target Start/End: Complemental strand, 8574 - 8516
Alignment:
Q  292 caaataatgcattgtgattgactgctctttattcttgaaaaattattgatgttattttt 350  Q
    |||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  8574 caaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttattttt 8516  T

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Target: scaffold0339 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 13443 - 13403
Alignment:
Q  178 aggaaaatgctctttctctagaaaaatagcatcaagaattt 218  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  13443 aggaaaatgatatttctctagaaaaatagcatcaagaattt 13403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 512 - 548
Alignment:
Q  243 tttaattgcatgatttatttgttcacttcctattttt 279  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  512 tttaactgcatgatttatttgttcacttcttattttt 548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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