View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-37 (Length: 299)
Name: NF1709-Insertion-37
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-37 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 31492017 - 31492183
Alignment:
| Q |
8 |
cttaaatatcattttcattaaaaatatttattgtgtacactttgtatgttagatcttttgtctttttgtgggtgtcaattatagataggaatcaaaacct |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
31492017 |
cttaaatatcattttcattaaaaatatttattgtgtacactttgtatgttagatcttttgtctttttgtgggtctcaattataggtaggaatcaaaacct |
31492116 |
T |
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| Q |
108 |
aattgagtagtgaagtaccacgaagatgggaagagtgg-aaaaaatctcacgtgcaattccataata |
173 |
Q |
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| T |
31492117 |
aattgagcagtgaagtaccacgaagatgggaagagtggaaaaaaatctcacgcgcaattccataata |
31492183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 31497406 - 31497572
Alignment:
| Q |
8 |
cttaaatatcattttcattaaaaatatttattgtgtacactttgtatgttagatcttttgtctttttgtgggtgtcaattatagataggaatcaaaacct |
107 |
Q |
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| T |
31497406 |
cttaaatatcattttcattaaaaatatttattgtgtacactttgtatgttagatcttttgtctttttgtgggtctcaattataggtaggaatcaaaacct |
31497505 |
T |
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| Q |
108 |
aattgagtagtgaagtaccacgaagatgggaagagtgg-aaaaaatctcacgtgcaattccataata |
173 |
Q |
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| T |
31497506 |
aattgagcagtgaagtaccacgaagatgggaagagtggaaaaaaatctcacgcgcaattccataata |
31497572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 31502792 - 31502958
Alignment:
| Q |
8 |
cttaaatatcattttcattaaaaatatttattgtgtacactttgtatgttagatcttttgtctttttgtgggtgtcaattatagataggaatcaaaacct |
107 |
Q |
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| T |
31502792 |
cttaaatatcattttcattaaaaatatttattgtgtacactttgtatgttagatcttttgtctttttgtgggtctcaattataggtaggaatcaaaacct |
31502891 |
T |
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| Q |
108 |
aattgagtagtgaagtaccacgaagatgggaagagtgg-aaaaaatctcacgtgcaattccataata |
173 |
Q |
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| T |
31502892 |
aattgagcagtgaagtaccacgaagatgggaagagtggaaaaaaatctcacgcgcaattccataata |
31502958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 31487512 - 31487652
Alignment:
| Q |
8 |
cttaaatatcattttcattaaaaatatttattgtgtacactttgtatgttagatcttttgtctttttgtgggtgtcaattatagataggaatcaaaacct |
107 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31487512 |
cttaaatatcattttcattaacaatatttattgtgtacactttgtaggttagatcttttgtctttttgtgggtgtcaattataggtaggaatcaaaacct |
31487611 |
T |
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| Q |
108 |
aattgagtagtgaagtaccacgaagatgggaagagtggaaa |
148 |
Q |
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| T |
31487612 |
aattgagtagtgaagtaccacgaagatgggaagagtggaaa |
31487652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 31492207 - 31492304
Alignment:
| Q |
198 |
caatacatataccttattacaatatcgtaaacatgcaagaattgtaagaccttattataattccataaccaagaacacaaaatctctcaaatctcttt |
295 |
Q |
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| T |
31492207 |
caatacatataccttattacaacatcgtaaacatgcaagaattgtaagaccttattataattccataaccaagaacacaaaatctctcaaatctcttt |
31492304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 31497596 - 31497693
Alignment:
| Q |
198 |
caatacatataccttattacaatatcgtaaacatgcaagaattgtaagaccttattataattccataaccaagaacacaaaatctctcaaatctcttt |
295 |
Q |
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| T |
31497596 |
caatacatataccttattacaacatcgtaaacatgcaagaattgtaagaccttattataattccataaccaagaacacaaaatctctcaaatctcttt |
31497693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 198 - 295
Target Start/End: Original strand, 31502982 - 31503079
Alignment:
| Q |
198 |
caatacatataccttattacaatatcgtaaacatgcaagaattgtaagaccttattataattccataaccaagaacacaaaatctctcaaatctcttt |
295 |
Q |
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| T |
31502982 |
caatacatataccttattacaacatcgtaaacatgcaagaattgtaagaccttattataattccataaccaagaacacaaaatctctcaaatctcttt |
31503079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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