View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-41 (Length: 268)
Name: NF1709-Insertion-41
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-41 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 37071548 - 37071808
Alignment:
| Q |
8 |
ctttgaaaatcttatccccgccaattctcttcttgtcacgacataacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattt |
107 |
Q |
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| T |
37071548 |
ctttgaaaatcttatccccgccaattctcttcttgtcacgacataacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattt |
37071647 |
T |
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| Q |
108 |
taacaagtcctccatatttgacttttcatcataatcttcttctaacaagtccttcatatttgagtcttcatcatagttttctaacaagtcctccatattt |
207 |
Q |
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| T |
37071648 |
taacaagtcctccatatttgacttttcatcataatcttcttctaacaagtccttcatatttgagtcttcatcatagttttctaacaagtcctccatattt |
37071747 |
T |
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| Q |
208 |
gactcttcatcatagtcttttgggctatccaaattgttagtgtattctaaccatgctgttc |
268 |
Q |
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| T |
37071748 |
gactcttcatcatagtcttttgggctatccaaattgttagtgtattctaaccatgctgttc |
37071808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 37081389 - 37081470
Alignment:
| Q |
8 |
ctttgaaaatcttatccccgccaattctcttcttgtcacgacataacattgcctcatgaaacatagtgtttccttcaacatt |
89 |
Q |
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| T |
37081389 |
ctttgaaaatcttatccccaccaattctcttcttgtcacgacataacattgcctcatgaaacatagtgtttccttcaacatt |
37081470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 36952556 - 36952459
Alignment:
| Q |
48 |
acataacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattttaacaagtcctccatatttgacttttcatcataatctt |
145 |
Q |
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| T |
36952556 |
acataacattgcctcatgtaacatagtgttaccttgaacgttcttcatcttcacaaattctaacaagtcctccatatttgacttttcatcatactctt |
36952459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 36952499 - 36952422
Alignment:
| Q |
186 |
ttctaacaagtcctccatatttgactcttcatcatagtcttttgggctatccaaattgttagtgtattctaaccatgc |
263 |
Q |
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| T |
36952499 |
ttctaacaagtcctccatatttgacttttcatcatactcttttgggtcatccaaattgttagtgtattctaaccatgc |
36952422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 36964018 - 36963878
Alignment:
| Q |
7 |
actttgaaaatcttatccccgccaattctcttcttgtcacgacataacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaatt |
106 |
Q |
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| T |
36964018 |
actttgaaaatcttgtccccgccaattctcttaatctcaccacaaaacattgcctcatgtaacatagtgtttccttgagcattctccttgttcacaaaac |
36963919 |
T |
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| Q |
107 |
ttaacaagtcctccatatttgacttttcatcataatcttct |
147 |
Q |
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| T |
36963918 |
ataataggtcctccatatttaacacctcatcatagtcttct |
36963878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 36946651 - 36946555
Alignment:
| Q |
51 |
taacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattttaacaagtcctccatatttgacttttcatcataatcttct |
147 |
Q |
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| T |
36946651 |
taacattgcctcatgtaacatagtgtttccttgagcattctccttgttcacaaaacataataggtcctccatatttaacacctcatcatagtcttct |
36946555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 12495479 - 12495576
Alignment:
| Q |
51 |
taacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattttaacaagtcctccatatttgacttttcatcataatcttctt |
148 |
Q |
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| T |
12495479 |
taacattgcctcatgtaacatagtgttgcctcgaacattcttctcctttacaaaatttaacaagtcctccatatttgacttttcatcatagtcttctt |
12495576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 12495536 - 12495573
Alignment:
| Q |
189 |
taacaagtcctccatatttgactcttcatcatagtctt |
226 |
Q |
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| T |
12495536 |
taacaagtcctccatatttgacttttcatcatagtctt |
12495573 |
T |
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