View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1709-Insertion-42 (Length: 227)
Name: NF1709-Insertion-42
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-42 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 372696 - 372893
Alignment:
| Q |
8 |
gtcgacgatggagattggggaataaatctataaggacaaacaacgatgttggttcataagaggaaacagaaatgaaaatgcaactaaacaccaaaaccaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
372696 |
gtcgacgatggagattggggaataaatctataaggacaaacaaagatgttggttcataagaggaaacagaaatgaaaatgcaactaaacaccaaaaccaa |
372795 |
T |
|
| Q |
108 |
caaaaaacttactcttcctcatttggtcttgcctcagaatttggaatatatctataaggacaaataacaatgtattattctattggttcataagaggaaa |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
372796 |
caaaaaacttactcttc----------------------tttggaatatatctataaggacaaataacaatgtattattctattggttcataagaggaaa |
372873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 372856 - 372945
Alignment:
| Q |
56 |
ttggttcataagaggaaacagaaatgaaaatgcaactaaacaccaaaaccaacaaaaaacttactcttcctcatttggtcttgcctcagaat |
147 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
372856 |
ttggttcataagaggaaacagaaataaaaatgtaactgaacaccaaaaccaac--aaatcttactcttcctcatttggtcttgcctcagaat |
372945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University