View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1709-Insertion-44 (Length: 165)
Name: NF1709-Insertion-44
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-44 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 158; Significance: 2e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 2e-84
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 45466472 - 45466315
Alignment:
| Q |
8 |
aaaacagccttcaacctctcttcaaattctcccctatacttcgcaccagcaaccaatgctcccatatccagagcaattaacctaacatcagcaagattgc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45466472 |
aaaacagccttcaacctctcttcaaattctcccctatacttcgcaccagcaaccaatgctcccatatccagagcaattaacctaacatcagcaagattgc |
45466373 |
T |
|
| Q |
108 |
taggaacatcacctctaacaatcctctgagccaacccttcaacaacagcagttttccc |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45466372 |
taggaacatcacctctaacaatcctctgagccaacccttcaacaacagcagttttccc |
45466315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 1e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 10044360 - 10044206
Alignment:
| Q |
8 |
aaaacagccttcaacctctcttcaaattctcccctatacttcgcaccagcaaccaatgctcccatatccagagcaattaacctaacatcagcaagattgc |
107 |
Q |
| |
|
||||| ||||||||||| | |||||||| ||||||||||| | |||||| || || ||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
10044360 |
aaaactgccttcaacctttgttcaaattgtcccctatactgagtaccagcgactaacgctcccatatccaaagcaaataacctaacatcagcaagattgc |
10044261 |
T |
|
| Q |
108 |
taggaacatcacctctaacaatcctctgagccaacccttcaacaacagcagtttt |
162 |
Q |
| |
|
|||||||||| |||||||| || |||| ||||| ||||||||||||||| ||||| |
|
|
| T |
10044260 |
taggaacatctcctctaactattctcttagccagcccttcaacaacagctgtttt |
10044206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University