View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1709-Insertion-48 (Length: 466)
Name: NF1709-Insertion-48
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-48 |
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| [»] chr7 (4 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 466
Target Start/End: Original strand, 7323891 - 7324343
Alignment:
| Q |
17 |
tattcagaggattatggttggtcctgacgacccagttaatccaggattacaaaaggaaatgaatttggtgaaagatttattagctaacacttcctcaaca |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || |||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| |
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| T |
7323891 |
tattcagaagattatggttggtcctgacgacccgattgatccaggattacaaaaggaattaaatttggtgaaagatttattagctaacactgcctcaacg |
7323990 |
T |
|
| Q |
117 |
aaagttccattattcactccttatttcacgaaggcatagaagaaaaaagaagttaaggtggcatacctaactcgttttcagggtccactccatcacctcc |
216 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
7323991 |
gaagttccattattcactccttatttcacgaaggcacagaagaaaaaagaagttaaggtggcatacctaactcgttctcagggtccactccatcacctcc |
7324090 |
T |
|
| Q |
217 |
aaaatgatggaatattcgggtagccggcaggacatgttattgttgtttggtttgacacgattctgtcctttttgtccttaaatttctttagggatatgaa |
316 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||| ||||||||||||||||||| |
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| T |
7324091 |
caaatgatggaatattcggggagccggcaggacatgttattgttgtttggtttgacacaattccgtcctttttgtctttagatttctttagggatatgaa |
7324190 |
T |
|
| Q |
317 |
ttgctttcctaactatcgctttccctaggatttctgttgtttctttctgtttcctgcatctctttttgagggttttggcctagtcccccc---tgtatat |
413 |
Q |
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|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
7324191 |
tttctttcctaactatcgctttccctaggatttccgttgtttctttctgtttcctgcatctctttttgagggttttggcctagtcccccctcttttatat |
7324290 |
T |
|
| Q |
414 |
atattttaaccnnnnnnnaataatatatatggagtaggcggtagaggatggga |
466 |
Q |
| |
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||||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
7324291 |
atatttttccctttttataataatatatatggagtaggcggtagaggatggga |
7324343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 8613138 - 8612985
Alignment:
| Q |
36 |
ggtcctgacgacccagttaatccaggattacaaaaggaaatgaatttggtgaaagatttattagctaacacttcctcaacaaaagttccattattcactc |
135 |
Q |
| |
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|||||| |||||||| | |||| | ||||||||||||||||||||||||||||||||||||||| || | | || ||| | |||||||||| | | ||| |
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| T |
8613138 |
ggtcctaacgacccaatggatccggtattacaaaaggaaatgaatttggtgaaagatttattagcgaatagtgccacaatagaagttccatt-tactctc |
8613040 |
T |
|
| Q |
136 |
cttatttcacgaaggcatagaagaaaaaagaagttaaggtggcatacctaactcgtt |
192 |
Q |
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| |||| ||||||||| |||||||||||| |||||||| | |||||||||| |||| |
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|
| T |
8613039 |
c--atttgacgaaggcacagaagaaaaaagtagttaaggcgacatacctaacccgtt |
8612985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Original strand, 12163329 - 12163357
Alignment:
| Q |
379 |
tttttgagggttttggcctagtcccccct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
12163329 |
tttttgagggttttggcctagtcccccct |
12163357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Complemental strand, 38993244 - 38993216
Alignment:
| Q |
379 |
tttttgagggttttggcctagtcccccct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
38993244 |
tttttgagggttttggcctagtcccccct |
38993216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 260 - 455
Target Start/End: Original strand, 27095631 - 27095829
Alignment:
| Q |
260 |
tgtttggtttgacacgattctgtcctttttgtccttaaatttctttagggatatgaattgctttcctaactatcgctttccctaggatttctgttgtttc |
359 |
Q |
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|
||||||||||||||| || | ||| |||||||| ||| ||||||| ||||| |||||| |||| ||||||||||| ||||| ||| |||| ||||| ||| |
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| T |
27095631 |
tgtttggtttgacacaatgccgtcttttttgtctttagatttcttgagggacatgaatagcttgcctaactatcgttttccttagaatttatgttggttc |
27095730 |
T |
|
| Q |
360 |
tttctgtttcctgcatctctttttgagggttttggcctagtcccccc---tgtatatatattttaaccnnnnnnnaataatatatatggagtaggcggt |
455 |
Q |
| |
|
|||| |||| ||||| || ||| ||||||||||||||||| |||||| |||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
27095731 |
tttccgttttctgcacctttttctgagggttttggcctagccccccctcttgtatatatatttttccgtgtttttaataatatatatggagtaggcggt |
27095829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 27095386 - 27095578
Alignment:
| Q |
12 |
ccagctattcagaggattatggttggtcctgacgacccagttaatccaggattacaaaaggaaatgaatttggtgaaagatttattagctaacacttcct |
111 |
Q |
| |
|
|||| |||||| | ||| ||||| ||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| |||| | || |
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| T |
27095386 |
ccagatattcaaaagataatggtaggtcctgacgacccagtggatccgatattacaaaagaaaatgaatttggtgaaagatttattagcgaacagtgcca |
27095485 |
T |
|
| Q |
112 |
caacaaaagttccattattcactccttatttcacgaaggcatagaagaaaaaagaagttaaggtggcatacctaactcgttttcagggtccactcc |
207 |
Q |
| |
|
||||| ||||||| ||| ||||| ||| | ||||| ||| |||||||||||| ||||||| ||||||||||| |||| | ||||||| |||| |
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|
| T |
27095486 |
caacagaagttcc---atttactccctatctgacgaatgcacagaagaaaaaagtggttaaggcagcatacctaacccgttctaagggtccgctcc |
27095578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Original strand, 30492275 - 30492303
Alignment:
| Q |
379 |
tttttgagggttttggcctagtcccccct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30492275 |
tttttgagggttttggcctagtcccccct |
30492303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 10177769 - 10177914
Alignment:
| Q |
17 |
tattcagaggattatggttggtcctgacgacccagttaatccaggattacaaaaggaaatgaatttggtgaaagatttattagctaacacttcctcaaca |
116 |
Q |
| |
|
|||||| | |||||||| ||||| ||||||||| | ||||| |||||| | ||||||||||||||||||||||||||||||||||| | ||||| | |
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|
| T |
10177769 |
tattcaaaagattatggctggtcttgacgacccgatggatccaatattacagagggaaatgaatttggtgaaagatttattagctaacagtgcctcagta |
10177868 |
T |
|
| Q |
117 |
aaagttccattattcactccttatttcacgaaggcatagaagaaaaaag |
165 |
Q |
| |
|
| ||||| | ||||||| ||||| ||||||||| | |||||||||| |
|
|
| T |
10177869 |
gatgttcc---actcactccctatttgacgaaggcacaaaagaaaaaag |
10177914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 403
Target Start/End: Original strand, 45831010 - 45831093
Alignment:
| Q |
320 |
ctttcctaactatcgctttccctaggatttctgttgtttctttctgtttcctgcatctctttttgagggttttggcctagtccc |
403 |
Q |
| |
|
|||||||||||| | |||||||| ||||| ||||||||||||| ||| |||| | ||||||| ||||||||||| ||||||| |
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|
| T |
45831010 |
ctttcctaactaccattttccctaagatttttgttgtttctttcctttttctgcttttcttttttagggttttggcttagtccc |
45831093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Complemental strand, 38500000 - 38499972
Alignment:
| Q |
379 |
tttttgagggttttggcctagtcccccct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38500000 |
tttttgagggttttggcctagtcccccct |
38499972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 466
Target Start/End: Original strand, 10306166 - 10306200
Alignment:
| Q |
432 |
aataatatatatggagtaggcggtagaggatggga |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
10306166 |
aataatatatatggagtaggcggtagaggatggga |
10306200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Complemental strand, 10623381 - 10623353
Alignment:
| Q |
379 |
tttttgagggttttggcctagtcccccct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10623381 |
tttttgagggttttggcctagtcccccct |
10623353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Original strand, 20952319 - 20952347
Alignment:
| Q |
379 |
tttttgagggttttggcctagtcccccct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
20952319 |
tttttgagggttttggcctagtcccccct |
20952347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 466
Target Start/End: Original strand, 12011059 - 12011093
Alignment:
| Q |
432 |
aataatatatatggagtaggcggtagaggatggga |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
12011059 |
aataatatatatggagtaggcggtagaggatggga |
12011093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Complemental strand, 36776733 - 36776705
Alignment:
| Q |
379 |
tttttgagggttttggcctagtcccccct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36776733 |
tttttgagggttttggcctagtcccccct |
36776705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Complemental strand, 46391657 - 46391629
Alignment:
| Q |
379 |
tttttgagggttttggcctagtcccccct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
46391657 |
tttttgagggttttggcctagtcccccct |
46391629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Complemental strand, 3540 - 3512
Alignment:
| Q |
379 |
tttttgagggttttggcctagtcccccct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3540 |
tttttgagggttttggcctagtcccccct |
3512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 403
Target Start/End: Complemental strand, 13567056 - 13567028
Alignment:
| Q |
375 |
tctctttttgagggttttggcctagtccc |
403 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
13567056 |
tctctttttgagggttttggcctagtccc |
13567028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Complemental strand, 3914383 - 3914355
Alignment:
| Q |
379 |
tttttgagggttttggcctagtcccccct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3914383 |
tttttgagggttttggcctagtcccccct |
3914355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Complemental strand, 27206520 - 27206492
Alignment:
| Q |
379 |
tttttgagggttttggcctagtcccccct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27206520 |
tttttgagggttttggcctagtcccccct |
27206492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 407
Target Start/End: Original strand, 28698126 - 28698154
Alignment:
| Q |
379 |
tttttgagggttttggcctagtcccccct |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28698126 |
tttttgagggttttggcctagtcccccct |
28698154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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