View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709-Insertion-50 (Length: 594)

Name: NF1709-Insertion-50
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709-Insertion-50
NF1709-Insertion-50
[»] chr2 (1 HSPs)
chr2 (8-594)||(24099435-24100021)


Alignment Details
Target: chr2 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 8 - 594
Target Start/End: Original strand, 24099435 - 24100021
Alignment:
Q  8 atgtgaatggttagcatgaaatgtagtgatctaatacacactttccttggctttgttcaatttcttttcagcttcttcggattgaagaggaactcggaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24099435 atgtgaatggttagcatgaaatgtagtgatctaatacacactttccttggctttgttcaatttcttttcagcttcttcggattgaagaggaactcggaag 24099534  T
Q  108 tgtgcgttatgcaggtgaagctttcagatctccttagaatggatagtgatcgatgtgagaaaattattccggaaatagttatgtattagaatcattgtaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24099535 tgtgcgttatgcaggtgaagctttcagatctccttagaatggatagcgatagatgtgagaaaattatttcggaaatagttatgtattagaatcattgtaa 24099634  T
Q  208 tcattggtttgtttaaaaaatcaaactggactgagaagaatcgcaagttttgatatagttgatagccgccttatggggttttcaaaagatttacttgggg 307  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24099635 tcattggtttgtttaagaaatcaaactggactgagaagaatcgcgagttttgatatagttgatagccgccttatggggttttcaaaagatttacttgggg 24099734  T
Q  308 agttggactttttaaacgtgttttggaccgaaataacggatagtgaataagtatttgatgcttgaatgaaaccactgttgtaatgcgaggaagtagttga 407  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24099735 agttggactttttaaacgtgttttgaaccgaaataacggatagtgaataagtatttgatgcttgaatgaaaccactgttgtaatgcgaggaagtagttga 24099834  T
Q  408 atgtaacaatgcagagataaagttgtgtaggtgtgattttcacttctgttaaacaaaagtatttgaaaatttagacattgtttgctggtatacactagtt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  24099835 atgtaacaatgcagagataaagttgtgtaggtgtgattttcacttctgttaaacaaaagtatttgaagatttagacattgtttgctggtatactctagtt 24099934  T
Q  508 tttcatttctagtgaacaacactatttcgtttccctatatcctctactttaaattgaaaaggtttacaagattgtagcctgcagtga 594  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  24099935 tttcatttctagtgaacaacactatttcgtttccctatatcctgtactttaaattgaaaaagtttacaagattgtagcctgcagtga 24100021  T

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