View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1709-Insertion-54 (Length: 360)

Name: NF1709-Insertion-54
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1709-Insertion-54
NF1709-Insertion-54
[»] chr4 (1 HSPs)
chr4 (11-360)||(2434091-2434440)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 360
Target Start/End: Original strand, 2434091 - 2434440
Alignment:
Q  11 tgttactacctaactaagttgaaagcattgtgtgatcgtttttcatggtaatagaaaatctaacagctcatttgacgtaactatggactcaccaaagtac 110  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2434091 tgttactacctaactaagttgaaagcattgtgtgattgtttttcatggtaatagaaaatctaacagctcatttgacgtaactatggactcaccaaagtac 2434190  T
Q  111 aaattagtattacactgccttgtggtatcgttattttagctagaggggtataaaacaacctctctaatgtaacgtgtatggttcctaaaagctaccatgc 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2434191 aaattagtattacattgccttgtggtatcgttattttagctagaggggtatagaacaacctctctaatgtaacgtgtatggttcctaaaagctaccatgc 2434290  T
Q  211 tatgtgcaatgaatttattacaggttgggttaacattacacatttgcacattttgcacatgtttgtggaggactttacttgaataaagagtatactcctt 310  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2434291 tatgtgcaacgaatttattacaggttgggttaacattacacatttgcacattttgcacatgtttgtggaggactttacttgaataaagagtatactcctt 2434390  T
Q  311 ccattttaaataaaagcaataaaaagtgtaactttagattcatgtaacaa 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2434391 ccattttaaataaaagcaataaaaagtgtaactttagattcatgtaacaa 2434440  T

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