View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-7 (Length: 746)
Name: NF1709-Insertion-7
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 226 - 746
Target Start/End: Original strand, 10804914 - 10805417
Alignment:
| Q |
226 |
atatttaattcaggcttgagattcagccttgtctcctataacattttggctcaggtatgctaatttctcaaatcttgttttatgctacgattatcattta |
325 |
Q |
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| T |
10804914 |
atatttaattcaggcttgagattcagccttgtctcctataacattttggctcaggtatgctaatttctcaaatcttgttttatgctacgattatcattta |
10805013 |
T |
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| Q |
326 |
ccaactaaaatactccctccggtactttttaaaagagacaaatgagtcaacaaaacttaatgtattctgtgtttattatgattca-atacatcgactttt |
424 |
Q |
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| T |
10805014 |
ccaactaaaatactccctccggtacat--------------------caacaaaacttaatgtattttgtgtttattatgattcagatatatcaactttt |
10805093 |
T |
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| Q |
425 |
gttaactcgtttgtctcttatnnnnnnn--cagtggagggagtaaagtacgaagacatatttaggaagtgagactcacatgcatgcacaccagtaatagt |
522 |
Q |
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| T |
10805094 |
gttaactcgtttgtctcttataaaaaaaaacagtggagggagtaacctacgaagacatttttaggaagtgagactcacacgcatgcacactagtaatagt |
10805193 |
T |
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| Q |
523 |
taattatatatgttagtgtcgtgttggtgtctgacattcatacaagtcaaaaacttaatacaccttcaatatgaagtgtcagtgctatattggacaaaag |
622 |
Q |
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| T |
10805194 |
taattatatatgttagtgtcgtgttggtgtctgacattgatacaagtcagaaacttaatacaccttcaatatgaagtgtcagtgctatattggacaaaag |
10805293 |
T |
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| Q |
623 |
gtttcaaatctagtatgtatataggtaccgttaccatgtatttgctataacattattttctaatactttgttatgtattgtaggtttatgtggagagctc |
722 |
Q |
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| T |
10805294 |
gtttcaaatctagtatgtatatagataccgttaccatgtatttgctataacattattttctaatactttcctatgtattgtaggtttatgtgaagagctc |
10805393 |
T |
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| Q |
723 |
ttttttcccatactcacctccttc |
746 |
Q |
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| T |
10805394 |
ttttttcccatactcacctccttc |
10805417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 10804700 - 10804896
Alignment:
| Q |
6 |
caccaacaccaatgtcatatcccaaattcatttcagttgaaggcgtcgatatacattcccggactaaacctgatggtaagtaacacattcctctcatacc |
105 |
Q |
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| T |
10804700 |
caccaacaccaatgtcatatcccaaattcatttcagttgaaggcgtcgatatacattcccgaactaaacctgatggtaagtaacacattcctctcatact |
10804799 |
T |
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| Q |
106 |
ttttgcgtgtttataatgaagcatggatacttttcgatgcgatcaagaattttctatgtcattcagatttctaagaattttatcattgccgaatttc |
202 |
Q |
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| T |
10804800 |
tttttcgtgtttataatgaagcatggatactttttgatgcgataaagaattttctatgtcattcagatttctaagaattttatcattgccgaatttc |
10804896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 391
Target Start/End: Original strand, 6282571 - 6282614
Alignment:
| Q |
348 |
tactttttaaaagagacaaatgagtcaacaaaacttaatgtatt |
391 |
Q |
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| T |
6282571 |
tactttttataagagacaaatgagtcaacaaaaattaatatatt |
6282614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 334 - 391
Target Start/End: Complemental strand, 24710801 - 24710744
Alignment:
| Q |
334 |
aatactccctccggtactttttaaaagagacaaatgagtcaacaaaacttaatgtatt |
391 |
Q |
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| T |
24710801 |
aatactccctccggtcctttttataaaagacaactgggtcaacaaaagttgatgtatt |
24710744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 30316031 - 30315982
Alignment:
| Q |
338 |
ctccctccggtactttttaaaagagacaaatgagtcaacaaaacttaatg |
387 |
Q |
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| T |
30316031 |
ctccctccggtcctttttataagaaacaaatgggtcaacaaaagttaatg |
30315982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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