View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-8 (Length: 775)
Name: NF1709-Insertion-8
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-8 |
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Alignment Details
Target: chr2 (Bit Score: 580; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 5 - 673
Target Start/End: Original strand, 11097712 - 11098383
Alignment:
| Q |
5 |
acaatttcaatagcaccggaaatcctgatcaaactctaaacacaacttacttacaaacattgcgtgagatatgtccccaaaatggaacagggaacaatct |
104 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11097712 |
acaatttcaatagcactggaaatcctgatcaaactctaaacacaacttacttacaaacattgcgtgagatatgtccccaaaatggaacagggaacaatct |
11097811 |
T |
|
| Q |
105 |
caccaatttagaccttactacaccaaatcaatttgacaacaaattctactccaatcttcaaagccacaaaggcttgcctcaaagtgatcaagagttattc |
204 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11097812 |
caccaatttggaccttactacaccaaatcaatttgacaacaaattctactccaatcttcaaagccacaaaggcttgcttcaaagtgatcaagagttattc |
11097911 |
T |
|
| Q |
205 |
tcaactcctaatgcagataccattgctattgttaatagctttagtagtaaccaagctctcttctttgagaattttagggtgtccatgattaaaatggcta |
304 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11097912 |
tcaactcctaatgcagataccattgctattgttaatagctttagtagcaaccaagctctcttctttgagaattttagggtgtccatgattaaaatggcta |
11098011 |
T |
|
| Q |
305 |
atattggtgtactaactggtgatcaaggtgaaattaggttgcaatgtaattttattaatgcagactcctctggattatctggtggtgcatctaaagatga |
404 |
Q |
| |
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||||| |||| ||||| ||| || |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
11098012 |
atattagtgtgctaaccggtaatgaaggggaaattaggttgcaatgtaattttattaatgcagattcctctggattatctggtggtgcatcaaaagatga |
11098111 |
T |
|
| Q |
405 |
acttttaagctcattctaaattaggtaacgtgcttggaagggtaaac----tattgtaaactacttacttaaaataaaacaagaagagtgtgattgggaa |
500 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11098112 |
acttttaagctcattctaaattagttaacgtgcttggaagggtaaactatatattgtaaactacttacttaaaataaaacaagaagagtgtgattgggaa |
11098211 |
T |
|
| Q |
501 |
ttaggtttttccaatttacctcttgtgatcgattgtcaaagttacttttgaatttcaatgtcacatgaaataatttatttacatttatgttgaaaattat |
600 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11098212 |
ttaggtttttccaatttacctcttgtcatcggttgttaaagttac-tttgaatttcaatgtcacatgaaataatttatttacatttatgttgaaagttat |
11098310 |
T |
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| Q |
601 |
atgtaattttgcttttccttttctccattgtgctcatgctactttagagtaaatgatatcactcgtgattcga |
673 |
Q |
| |
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| T |
11098311 |
atgtaattttgcttttccttttctccattgtgctcatgctactttagagtaaatgatatcactcgtgattcga |
11098383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 5 - 425
Target Start/End: Original strand, 11104729 - 11105149
Alignment:
| Q |
5 |
acaatttcaatagcaccggaaatcctgatcaaactctaaacacaacttacttacaaacattgcgtgagatatgtccccaaaatggaacagggaacaatct |
104 |
Q |
| |
|
||||||||| | |||| ||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| || |
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| T |
11104729 |
acaatttcagtggcactggaaatcctgatccaacattaaacacaacttacttacaaacattgcgtctgatatgtccccaaaattcaacaggaaacaacct |
11104828 |
T |
|
| Q |
105 |
caccaatttagaccttactacaccaaatcaatttgacaacaaattctactccaatcttcaaagccacaaaggcttgcctcaaagtgatcaagagttattc |
204 |
Q |
| |
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||||||| |||||||| ||||| ||||| ||||| ||||||| |||||||||||||||| || ||| ||||| | ||| |||||||||| |||| |
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| T |
11104829 |
agccaatttggaccttaccacacctaatcactttgataacaaatattactccaatcttcaaaacctcaatggcttacttcatagtgatcaagttctatta |
11104928 |
T |
|
| Q |
205 |
tcaactcctaatgcagataccattgctattgttaatagctttagtagtaaccaagctctcttctttgagaattttagggtgtccatgattaaaatggcta |
304 |
Q |
| |
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|| |||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||| || |||||||||||||| | |
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| T |
11104929 |
tccactcctaatgcagacaccattgctattgttaatagctttagcaataaccaatctctcttctttctgaattttagggtttcgatgattaaaatggcga |
11105028 |
T |
|
| Q |
305 |
atattggtgtactaactggtgatcaaggtgaaattaggttgcaatgtaattttattaatgcagactcctctggattatctggtggtgcatctaaagatga |
404 |
Q |
| |
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||||||| || ||||||||||| |||| || ||||||||||||||||||||| | |||| ||||| |||||||| || |||||| ||| ||||||| |
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| T |
11105029 |
atattggagtgttaactggtgatgaaggggagattaggttgcaatgtaattttgtaaatggtaactccgctggattagctcgtggtggatcaaaagatgg |
11105128 |
T |
|
| Q |
405 |
acttttaagctcattctaaat |
425 |
Q |
| |
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| ||||||||| ||||||| |
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| T |
11105129 |
cttgttaagctcactctaaat |
11105149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 684 - 775
Target Start/End: Original strand, 11099231 - 11099323
Alignment:
| Q |
684 |
agaagtaattaatgtggctataattatattagcagtaagaaaattgatannnnnnnnnccttctagcta-gaaaaagggaggactttgtatgt |
775 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||||||||| |
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| T |
11099231 |
agaagtaattaatgtggctataattatattagcagttagaaaattgatatttttttttccttctagctaggaaaaagggaagactttgtatgt |
11099323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 341
Target Start/End: Complemental strand, 11190878 - 11190724
Alignment:
| Q |
187 |
agtgatcaagagttattctcaactcctaatgcagataccattgctattgttaatagctttagtagtaaccaagctctcttctttgagaattttagggtgt |
286 |
Q |
| |
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|||||||||||| | || || || ||| ||| ||||||||||| ||||||||||||||||| || || ||| |||| |||||||| ||||| || | |
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| T |
11190878 |
agtgatcaagagcttttttccacacctggtgctgataccattgccattgttaatagctttagcagcaatcaaactcttttctttgaagcttttaaggcct |
11190779 |
T |
|
| Q |
287 |
ccatgattaaaatggctaatattggtgtactaactggtgatcaaggtgaaattag |
341 |
Q |
| |
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|||||||||| |||| ||||||||| || ||||||| |||||||||| |||| |
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| T |
11190778 |
ccatgattaagatgggtaatattggagtgttaactggaactcaaggtgaagttag |
11190724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 220 - 341
Target Start/End: Complemental strand, 11183621 - 11183500
Alignment:
| Q |
220 |
gataccattgctattgttaatagctttagtagtaaccaagctctcttctttgagaattttagggtgtccatgattaaaatggctaatattggtgtactaa |
319 |
Q |
| |
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||||||||||| ||||||||||||||||| || || ||| |||| |||||||| ||||| || ||||||||||| |||| ||||||||| || ||| |
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| T |
11183621 |
gataccattgccattgttaatagctttagcagcaatcaaactcttttctttgaagcttttaaggcctccatgattaagatgggtaatattggagtgttaa |
11183522 |
T |
|
| Q |
320 |
ctggtgatcaaggtgaaattag |
341 |
Q |
| |
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|||| |||||||||| |||| |
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|
| T |
11183521 |
ctggaactcaaggtgaagttag |
11183500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 11191063 - 11191018
Alignment:
| Q |
5 |
acaatttcaatagcaccggaaatcctgatcaaactctaaacacaac |
50 |
Q |
| |
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|||||||||||| ||||||| |||||||| ||||||||||||||| |
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| T |
11191063 |
acaatttcaataacaccggagttcctgatccaactctaaacacaac |
11191018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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