View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1709-Insertion-9 (Length: 752)
Name: NF1709-Insertion-9
Description: NF1709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1709-Insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 238 - 733
Target Start/End: Original strand, 11812499 - 11812988
Alignment:
| Q |
238 |
tatatatatcaacaacttatattataacctttcaagcctttcaaaacaaccgtttatgtattaaacatgacaaatatttatatgaaaatggttttttgaa |
337 |
Q |
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| T |
11812499 |
tatatatatcaacaacttatattgtaacctttgaagcctttcaaaacaaccgtttatgtattaaacatgacaaatatttatatgaaaatggttttttgaa |
11812598 |
T |
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| Q |
338 |
ttaaaaattgactcaaacaaattttccgataccagtttccatgcaatagaacaactacacaacttttgacttcaggatcaaggtactcaccataacctta |
437 |
Q |
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| T |
11812599 |
ttaaaaattgactcaaacaaattttccgataccagtttccatgcaatagaacaactacacaacttttgacttcaggatcaaggtactcaccataacctta |
11812698 |
T |
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| Q |
438 |
ttataattttaatttatgttagttttgcttaatgatcatctatgtatgtgattctgaccttatgactgatgatgttatctgaatttaggctacaccccaa |
537 |
Q |
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| T |
11812699 |
ttataattttaatttatgttagttttgcttaatgatcatctatgcatgtgattctgaccttatgactgatgatgttatctgaatttaggctacaccccaa |
11812798 |
T |
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| Q |
538 |
tttgctatttccacctcactctaacaattatcatatgatcaagtataatttttagttttgatcaatggtttctgtccaattttgattattttttcagtct |
637 |
Q |
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| T |
11812799 |
tttgctatttccacctcactctaacaattatcatatgatcaattataatttttagttttgatcaatggtttatgtccaattttgattatttttgcagtct |
11812898 |
T |
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| Q |
638 |
tctgtagtgggcccatgagtgaaattatcattttttgtcaaaggtttaaaagaaaatcttaattttgatgtatgggtgggtgtcaaatttatttgg |
733 |
Q |
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| T |
11812899 |
tctgtagtggg-ccatgagtg-aattatca-tttttgtcaaaggttt-aaagaaaatcttaa-tttgatgtat-ggtgtgtgtcaaatttatttgg |
11812988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 11812343 - 11812440
Alignment:
| Q |
102 |
aaccaaagacaaaaatttaacaatttacannnnnnnnccgtatgataccaactctatgaattgaatcgcatgaaaaattgaaataactattatttgtc |
199 |
Q |
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| T |
11812343 |
aaccaaagacaaaaattaaacaatttacattttctttccgtatgataccaactctatgaattgaaccgcataaaaaattgaaataactattatttgtc |
11812440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 11812303 - 11812345
Alignment:
| Q |
8 |
actttaccaacatcttcactcataaacattttagagattgaac |
50 |
Q |
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| T |
11812303 |
actttaccaacatcttcactcataaacattttagagattgaac |
11812345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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